Gvermi5847.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5847.t1
Unique Name	Gvermi5847.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:354797..356140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	504472.Slin_1553
PFAMs	AMP-binding,AMP-binding_C,PP-binding
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00004,RC00014,RC00137
KEGG ko	ko:K01897,ko:K18660
KEGG TC	4.C.1.1
KEGG Reaction	R01280,R03383
KEGG Pathway	ko00061,ko00071,ko00280,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map00280,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
Evalue	1.34e-100
EggNOG OGs	COG0318@1\|root,COG0318@2\|Bacteria,4NFPF@976\|Bacteroidetes,47NTH@768503\|Cytophagia
EC	6.2.1.3
Description	AMP-binding enzyme C-terminal domain
COG category	IQ
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5847	Gvermi5847	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 354797..356140 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5847.t1.start1	Gvermi5847.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 354797..354799 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5847.t1.CDS1	Gvermi5847.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 354797..356140 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5847.t1.exon1	Gvermi5847.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 354797..356140 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5847.t1.stop1	Gvermi5847.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 356138..356140 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5847.t1	Gvermi5847.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 354797..356140 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:354797..356140+
coding sequence from alignment at ScGOVlb_1708:354797..356140+

mRNA sequence

>Gvermi5847.t1 ID=Gvermi5847.t1|Name=Gvermi5847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=448bp
LPPTPAFVPALLAVWARGATAVPLSPLFPAAALAPLLAAADPDVVLTSQR
LRHALPPVACPVRLVDDVAAAAAPPPPSDAAFDRLCHRVHRALPHHALTF
FTSGTTGAPKGVVWTADMLHYQLRTLSDAWRWSPDDRALNVLPLHHIHGL
VNVVLSALYNAAPLEMHSAFDAHSVWRSILRESPHLPPTVFMAVPAVYKK
LILYYHAASPRDQHAMRRAAADLRLYVCGSASLSKPDFDAWHAISGHRIL
ERYGMTETGMTLSNPYDARRQGLLGLPLPGVRAAIEDDHHTGQLLIKGPG
VFTHYFRMPDKTRQAFTPDGWFKTGDVVTTDPDSGYYKLLGRENADIIKT
GGYKVSALEIEDVIRECDGVVDCCVIGVPDDVLGQRIAAALIIDHTDDVL
SRVQSRAAQFLPKYKIPRQYHVMDDFPRNVMGKVQKQVLQIRLRAPA*

spliced messenger RNA

>Gvermi5847.t1 ID=Gvermi5847.t1|Name=Gvermi5847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1708:354797..356140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGCCCACGCCCGCCTTCGTGCCCGCGCTGCTCGCCGTGTGGGCGCG
CGGCGCCACCGCCGTCCCGCTGTCGCCGCTCTTCCCCGCCGCCGCGCTCG
CCCCCCTGCTTGCCGCCGCCGACCCCGACGTCGTCCTCACCTCGCAGCGC
CTCCGCCACGCGCTGCCGCCCGTCGCCTGCCCCGTGCGCCTCGTCGACGA
CGTCGCCGCCGCCGCCGCCCCCCCGCCCCCCTCCGACGCCGCCTTCGACC
GCCTCTGTCACCGCGTCCACCGCGCCCTCCCCCACCACGCCCTCACCTTC
TTCACCTCCGGCACCACCGGCGCCCCCAAGGGCGTCGTCTGGACCGCCGA
CATGCTGCACTACCAGCTGCGCACGCTGTCCGACGCCTGGCGCTGGTCCC
CCGACGATCGCGCCCTCAACGTCCTCCCGCTGCACCACATCCACGGCCTC
GTCAACGTCGTGCTAAGCGCCCTGTACAACGCCGCCCCCCTGGAAATGCA
CTCCGCCTTCGACGCCCACTCCGTGTGGCGCTCCATCCTGCGCGAGTCGC
CGCACCTCCCGCCCACCGTCTTCATGGCCGTCCCGGCCGTCTACAAGAAG
CTCATCCTCTACTACCACGCCGCTTCGCCCCGCGACCAGCACGCCATGCG
CCGCGCCGCCGCCGACCTTCGCCTCTACGTCTGCGGCAGCGCCTCGCTGT
CCAAGCCCGACTTTGACGCCTGGCACGCCATCTCCGGCCACCGCATTCTC
GAGCGCTACGGCATGACCGAGACCGGCATGACGCTCAGCAACCCGTACGA
CGCCCGCCGCCAGGGCCTGCTGGGCCTCCCGCTCCCGGGCGTGCGCGCCG
CCATCGAGGACGACCACCACACGGGCCAGCTCCTCATCAAGGGGCCGGGC
GTCTTCACGCACTACTTCCGCATGCCGGACAAGACGCGCCAAGCCTTCAC
TCCGGACGGCTGGTTCAAGACTGGCGACGTCGTCACCACCGACCCCGACT
CCGGCTACTACAAGCTGCTGGGCAGGGAAAACGCCGACATCATCAAGACG
GGCGGCTACAAGGTGTCCGCCCTGGAGATCGAGGACGTCATCCGCGAGTG
CGATGGCGTCGTCGACTGCTGCGTCATTGGCGTCCCGGATGACGTTCTGG
GGCAGCGAATCGCCGCCGCCCTCATCATCGATCACACCGATGACGTCCTC
AGCCGCGTCCAAAGTCGCGCTGCGCAGTTCTTGCCCAAGTACAAAATCCC
CAGACAGTACCATGTAATGGACGACTTTCCCAGAAACGTCATGGGCAAGG
TTCAGAAGCAGGTGCTACAGATCAGACTACGTGCGCCCGCGTAG

protein sequence of Gvermi5847.t1

>Gvermi5847.t1 ID=Gvermi5847.t1|Name=Gvermi5847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=448bp
LPPTPAFVPALLAVWARGATAVPLSPLFPAAALAPLLAAADPDVVLTSQR
LRHALPPVACPVRLVDDVAAAAAPPPPSDAAFDRLCHRVHRALPHHALTF
FTSGTTGAPKGVVWTADMLHYQLRTLSDAWRWSPDDRALNVLPLHHIHGL
VNVVLSALYNAAPLEMHSAFDAHSVWRSILRESPHLPPTVFMAVPAVYKK
LILYYHAASPRDQHAMRRAAADLRLYVCGSASLSKPDFDAWHAISGHRIL
ERYGMTETGMTLSNPYDARRQGLLGLPLPGVRAAIEDDHHTGQLLIKGPG
VFTHYFRMPDKTRQAFTPDGWFKTGDVVTTDPDSGYYKLLGRENADIIKT
GGYKVSALEIEDVIRECDGVVDCCVIGVPDDVLGQRIAAALIIDHTDDVL
SRVQSRAAQFLPKYKIPRQYHVMDDFPRNVMGKVQKQVLQIRLRAPA*

mRNA from alignment at ScGOVlb_1708:354797..356140+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5847.t1 ID=Gvermi5847.t1|Name=Gvermi5847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1708:354797..356140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCCCACGCCCGCCTTCGTGCCCGCGCTGCTCGCCGTGTGGGCGCG
CGGCGCCACCGCCGTCCCGCTGTCGCCGCTCTTCCCCGCCGCCGCGCTCG
CCCCCCTGCTTGCCGCCGCCGACCCCGACGTCGTCCTCACCTCGCAGCGC
CTCCGCCACGCGCTGCCGCCCGTCGCCTGCCCCGTGCGCCTCGTCGACGA
CGTCGCCGCCGCCGCCGCCCCCCCGCCCCCCTCCGACGCCGCCTTCGACC
GCCTCTGTCACCGCGTCCACCGCGCCCTCCCCCACCACGCCCTCACCTTC
TTCACCTCCGGCACCACCGGCGCCCCCAAGGGCGTCGTCTGGACCGCCGA
CATGCTGCACTACCAGCTGCGCACGCTGTCCGACGCCTGGCGCTGGTCCC
CCGACGATCGCGCCCTCAACGTCCTCCCGCTGCACCACATCCACGGCCTC
GTCAACGTCGTGCTAAGCGCCCTGTACAACGCCGCCCCCCTGGAAATGCA
CTCCGCCTTCGACGCCCACTCCGTGTGGCGCTCCATCCTGCGCGAGTCGC
CGCACCTCCCGCCCACCGTCTTCATGGCCGTCCCGGCCGTCTACAAGAAG
CTCATCCTCTACTACCACGCCGCTTCGCCCCGCGACCAGCACGCCATGCG
CCGCGCCGCCGCCGACCTTCGCCTCTACGTCTGCGGCAGCGCCTCGCTGT
CCAAGCCCGACTTTGACGCCTGGCACGCCATCTCCGGCCACCGCATTCTC
GAGCGCTACGGCATGACCGAGACCGGCATGACGCTCAGCAACCCGTACGA
CGCCCGCCGCCAGGGCCTGCTGGGCCTCCCGCTCCCGGGCGTGCGCGCCG
CCATCGAGGACGACCACCACACGGGCCAGCTCCTCATCAAGGGGCCGGGC
GTCTTCACGCACTACTTCCGCATGCCGGACAAGACGCGCCAAGCCTTCAC
TCCGGACGGCTGGTTCAAGACTGGCGACGTCGTCACCACCGACCCCGACT
CCGGCTACTACAAGCTGCTGGGCAGGGAAAACGCCGACATCATCAAGACG
GGCGGCTACAAGGTGTCCGCCCTGGAGATCGAGGACGTCATCCGCGAGTG
CGATGGCGTCGTCGACTGCTGCGTCATTGGCGTCCCGGATGACGTTCTGG
GGCAGCGAATCGCCGCCGCCCTCATCATCGATCACACCGATGACGTCCTC
AGCCGCGTCCAAAGTCGCGCTGCGCAGTTCTTGCCCAAGTACAAAATCCC
CAGACAGTACCATGTAATGGACGACTTTCCCAGAAACGTCATGGGCAAGG
TTCAGAAGCAGGTGCTACAGATCAGACTACGTGCGCCCGCGTAG

Coding sequence (CDS) from alignment at ScGOVlb_1708:354797..356140+

>Gvermi5847.t1 ID=Gvermi5847.t1|Name=Gvermi5847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1708:354797..356140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCCCACGCCCGCCTTCGTGCCCGCGCTGCTCGCCGTGTGGGCGCG
CGGCGCCACCGCCGTCCCGCTGTCGCCGCTCTTCCCCGCCGCCGCGCTCG
CCCCCCTGCTTGCCGCCGCCGACCCCGACGTCGTCCTCACCTCGCAGCGC
CTCCGCCACGCGCTGCCGCCCGTCGCCTGCCCCGTGCGCCTCGTCGACGA
CGTCGCCGCCGCCGCCGCCCCCCCGCCCCCCTCCGACGCCGCCTTCGACC
GCCTCTGTCACCGCGTCCACCGCGCCCTCCCCCACCACGCCCTCACCTTC
TTCACCTCCGGCACCACCGGCGCCCCCAAGGGCGTCGTCTGGACCGCCGA
CATGCTGCACTACCAGCTGCGCACGCTGTCCGACGCCTGGCGCTGGTCCC
CCGACGATCGCGCCCTCAACGTCCTCCCGCTGCACCACATCCACGGCCTC
GTCAACGTCGTGCTAAGCGCCCTGTACAACGCCGCCCCCCTGGAAATGCA
CTCCGCCTTCGACGCCCACTCCGTGTGGCGCTCCATCCTGCGCGAGTCGC
CGCACCTCCCGCCCACCGTCTTCATGGCCGTCCCGGCCGTCTACAAGAAG
CTCATCCTCTACTACCACGCCGCTTCGCCCCGCGACCAGCACGCCATGCG
CCGCGCCGCCGCCGACCTTCGCCTCTACGTCTGCGGCAGCGCCTCGCTGT
CCAAGCCCGACTTTGACGCCTGGCACGCCATCTCCGGCCACCGCATTCTC
GAGCGCTACGGCATGACCGAGACCGGCATGACGCTCAGCAACCCGTACGA
CGCCCGCCGCCAGGGCCTGCTGGGCCTCCCGCTCCCGGGCGTGCGCGCCG
CCATCGAGGACGACCACCACACGGGCCAGCTCCTCATCAAGGGGCCGGGC
GTCTTCACGCACTACTTCCGCATGCCGGACAAGACGCGCCAAGCCTTCAC
TCCGGACGGCTGGTTCAAGACTGGCGACGTCGTCACCACCGACCCCGACT
CCGGCTACTACAAGCTGCTGGGCAGGGAAAACGCCGACATCATCAAGACG
GGCGGCTACAAGGTGTCCGCCCTGGAGATCGAGGACGTCATCCGCGAGTG
CGATGGCGTCGTCGACTGCTGCGTCATTGGCGTCCCGGATGACGTTCTGG
GGCAGCGAATCGCCGCCGCCCTCATCATCGATCACACCGATGACGTCCTC
AGCCGCGTCCAAAGTCGCGCTGCGCAGTTCTTGCCCAAGTACAAAATCCC
CAGACAGTACCATGTAATGGACGACTTTCCCAGAAACGTCATGGGCAAGG
TTCAGAAGCAGGTGCTACAGATCAGACTACGTGCGCCCGCGTAG