Gvermi5843.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5843.t1
Unique NameGvermi5843.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:319712..321502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5843Gvermi5843Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 319712..321502 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5843.t1.stop1Gvermi5843.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 319712..319714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5843.t1.CDS1Gvermi5843.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 319712..321502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5843.t1.exon1Gvermi5843.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 319712..321502 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5843.t1.start1Gvermi5843.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 321500..321502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5843.t1Gvermi5843.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 319712..321502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5843.t1 ID=Gvermi5843.t1|Name=Gvermi5843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MDQESQVRGLSFRPEKVPNFEEWAADVKLEIRGDPTENAFEVDWIGQTRQ
VSSAKEFVENILKILAVTQSPSYRNRLCWGAKFSVDSDVLDEQLTPEKVD
QAFTCYGEQLVIGVVKSKKTDPDWLVDGTISITSYMFRMTKNVDCFLDES
GAKWGGDTVGISCTAIVDGSECIPNVLLSTPGATLLSKFIRAMVVTNLGV
ESSEVLWFKVLVQMSEQTEMLSKTLSAFAQVWDIDYEQLLGDADRVWEWV
ESSFTGEQLELSRNIANALFALPFHDRDGPKSLCAKQRPLPVTLDGFHHL
SDTEGWKYVARHFWLSFRTISLDIEQSAKIYYYDILYRYLIEEEIALKGA
DEHDVAVLKEYLSDLDAEGHLDPCPKPFVEHLAGETLAQDALQKDCRVAQ
IRLEARASSTIELTTATTFPVRVNGRRARLVITEGSELLIRGKDVVRIAQ
NIGSALQGVSFMGFGANWVSRSNELKNLKGSMVANLVMQGEFGPEAGLWL
LSHILYGDLKVSSESENGLIQSLATDSEGLKISVAIDAGIVASIHAATDG
GTVFLCLSRTKVFTLKRAGGVLKASPCNVDVQDMKGCSLSPRRAVS*
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spliced messenger RNA

>Gvermi5843.t1 ID=Gvermi5843.t1|Name=Gvermi5843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_1708:319712..321502- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGGAATCCCAGGTGAGGGGGCTGTCGTTTCGTCCAGAAAAAGT
TCCTAATTTTGAAGAGTGGGCTGCAGATGTAAAACTCGAAATAAGAGGTG
ATCCCACAGAAAATGCTTTTGAAGTGGACTGGATTGGGCAAACGAGACAA
GTTTCAAGTGCTAAGGAGTTTGTTGAAAACATATTGAAGATCCTCGCAGT
GACACAAAGTCCATCGTACCGAAACCGACTGTGTTGGGGTGCGAAATTCT
CCGTGGACAGTGATGTGTTAGACGAGCAGCTGACACCAGAAAAAGTGGAC
CAAGCTTTCACTTGCTATGGTGAACAATTGGTGATCGGTGTCGTGAAGTC
TAAAAAGACTGATCCCGACTGGCTGGTTGACGGCACAATCTCTATCACGT
CGTATATGTTTCGCATGACCAAGAACGTGGATTGTTTCCTAGACGAAAGT
GGCGCAAAGTGGGGTGGTGACACAGTGGGAATCAGCTGCACAGCAATTGT
TGACGGTTCAGAATGTATTCCTAATGTGTTGTTGTCAACGCCCGGTGCTA
CGTTACTCTCAAAATTCATTCGCGCGATGGTTGTTACCAACCTCGGGGTC
GAATCATCAGAGGTTTTGTGGTTTAAAGTGCTTGTTCAGATGAGTGAACA
AACGGAAATGTTGTCGAAAACATTGTCTGCCTTTGCGCAGGTGTGGGATA
TTGATTATGAGCAGCTTCTTGGTGATGCTGATCGGGTGTGGGAATGGGTT
GAAAGCTCTTTCACAGGAGAGCAATTGGAGCTGTCGCGAAACATTGCAAA
TGCGCTGTTTGCGTTACCGTTCCATGACCGTGACGGTCCCAAGTCACTTT
GCGCAAAGCAGCGCCCGCTGCCAGTTACACTTGACGGCTTCCATCATCTA
AGCGACACTGAAGGGTGGAAGTACGTCGCGCGGCATTTTTGGCTCTCGTT
TCGAACGATTTCGCTGGACATTGAACAAAGTGCCAAGATTTACTACTATG
ATATTCTTTATCGCTACTTGATTGAAGAAGAGATCGCTCTGAAAGGCGCC
GATGAGCACGATGTTGCCGTGCTGAAGGAGTACTTGTCCGATCTCGACGC
AGAGGGCCATTTAGACCCTTGCCCAAAACCGTTTGTAGAACACTTGGCCG
GAGAAACATTGGCTCAGGATGCTCTGCAGAAGGACTGCAGAGTAGCTCAG
ATCCGGCTTGAAGCACGCGCGTCTTCAACCATCGAGCTCACAACTGCGAC
CACTTTCCCAGTTCGGGTGAATGGGCGTAGGGCGAGGTTGGTCATAACAG
AGGGGTCTGAACTACTTATTCGAGGAAAAGACGTAGTACGCATTGCTCAG
AACATCGGTAGCGCACTGCAGGGAGTGTCGTTTATGGGGTTCGGAGCGAA
TTGGGTCTCGCGATCGAACGAGCTGAAAAACTTGAAAGGCTCCATGGTGG
CTAACCTCGTAATGCAGGGTGAGTTTGGGCCGGAGGCGGGGCTGTGGCTA
TTGTCACATATTCTATACGGCGATTTGAAGGTGTCCAGCGAGAGTGAAAA
TGGGTTGATACAAAGTCTGGCTACTGACTCGGAGGGGTTGAAAATCAGCG
TCGCCATTGATGCGGGAATCGTGGCATCAATCCACGCTGCGACTGATGGG
GGGACAGTGTTCCTTTGCCTCAGCAGAACCAAAGTGTTTACACTGAAACG
AGCGGGAGGAGTGCTCAAGGCGAGTCCATGCAACGTTGACGTGCAGGATA
TGAAGGGCTGTTCTCTGTCGCCGCGCCGAGCCGTGAGCTGA
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protein sequence of Gvermi5843.t1

>Gvermi5843.t1 ID=Gvermi5843.t1|Name=Gvermi5843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MDQESQVRGLSFRPEKVPNFEEWAADVKLEIRGDPTENAFEVDWIGQTRQ
VSSAKEFVENILKILAVTQSPSYRNRLCWGAKFSVDSDVLDEQLTPEKVD
QAFTCYGEQLVIGVVKSKKTDPDWLVDGTISITSYMFRMTKNVDCFLDES
GAKWGGDTVGISCTAIVDGSECIPNVLLSTPGATLLSKFIRAMVVTNLGV
ESSEVLWFKVLVQMSEQTEMLSKTLSAFAQVWDIDYEQLLGDADRVWEWV
ESSFTGEQLELSRNIANALFALPFHDRDGPKSLCAKQRPLPVTLDGFHHL
SDTEGWKYVARHFWLSFRTISLDIEQSAKIYYYDILYRYLIEEEIALKGA
DEHDVAVLKEYLSDLDAEGHLDPCPKPFVEHLAGETLAQDALQKDCRVAQ
IRLEARASSTIELTTATTFPVRVNGRRARLVITEGSELLIRGKDVVRIAQ
NIGSALQGVSFMGFGANWVSRSNELKNLKGSMVANLVMQGEFGPEAGLWL
LSHILYGDLKVSSESENGLIQSLATDSEGLKISVAIDAGIVASIHAATDG
GTVFLCLSRTKVFTLKRAGGVLKASPCNVDVQDMKGCSLSPRRAVS*
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mRNA from alignment at ScGOVlb_1708:319712..321502-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5843.t1 ID=Gvermi5843.t1|Name=Gvermi5843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_1708:319712..321502- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCAGGAATCCCAGGTGAGGGGGCTGTCGTTTCGTCCAGAAAAAGT
TCCTAATTTTGAAGAGTGGGCTGCAGATGTAAAACTCGAAATAAGAGGTG
ATCCCACAGAAAATGCTTTTGAAGTGGACTGGATTGGGCAAACGAGACAA
GTTTCAAGTGCTAAGGAGTTTGTTGAAAACATATTGAAGATCCTCGCAGT
GACACAAAGTCCATCGTACCGAAACCGACTGTGTTGGGGTGCGAAATTCT
CCGTGGACAGTGATGTGTTAGACGAGCAGCTGACACCAGAAAAAGTGGAC
CAAGCTTTCACTTGCTATGGTGAACAATTGGTGATCGGTGTCGTGAAGTC
TAAAAAGACTGATCCCGACTGGCTGGTTGACGGCACAATCTCTATCACGT
CGTATATGTTTCGCATGACCAAGAACGTGGATTGTTTCCTAGACGAAAGT
GGCGCAAAGTGGGGTGGTGACACAGTGGGAATCAGCTGCACAGCAATTGT
TGACGGTTCAGAATGTATTCCTAATGTGTTGTTGTCAACGCCCGGTGCTA
CGTTACTCTCAAAATTCATTCGCGCGATGGTTGTTACCAACCTCGGGGTC
GAATCATCAGAGGTTTTGTGGTTTAAAGTGCTTGTTCAGATGAGTGAACA
AACGGAAATGTTGTCGAAAACATTGTCTGCCTTTGCGCAGGTGTGGGATA
TTGATTATGAGCAGCTTCTTGGTGATGCTGATCGGGTGTGGGAATGGGTT
GAAAGCTCTTTCACAGGAGAGCAATTGGAGCTGTCGCGAAACATTGCAAA
TGCGCTGTTTGCGTTACCGTTCCATGACCGTGACGGTCCCAAGTCACTTT
GCGCAAAGCAGCGCCCGCTGCCAGTTACACTTGACGGCTTCCATCATCTA
AGCGACACTGAAGGGTGGAAGTACGTCGCGCGGCATTTTTGGCTCTCGTT
TCGAACGATTTCGCTGGACATTGAACAAAGTGCCAAGATTTACTACTATG
ATATTCTTTATCGCTACTTGATTGAAGAAGAGATCGCTCTGAAAGGCGCC
GATGAGCACGATGTTGCCGTGCTGAAGGAGTACTTGTCCGATCTCGACGC
AGAGGGCCATTTAGACCCTTGCCCAAAACCGTTTGTAGAACACTTGGCCG
GAGAAACATTGGCTCAGGATGCTCTGCAGAAGGACTGCAGAGTAGCTCAG
ATCCGGCTTGAAGCACGCGCGTCTTCAACCATCGAGCTCACAACTGCGAC
CACTTTCCCAGTTCGGGTGAATGGGCGTAGGGCGAGGTTGGTCATAACAG
AGGGGTCTGAACTACTTATTCGAGGAAAAGACGTAGTACGCATTGCTCAG
AACATCGGTAGCGCACTGCAGGGAGTGTCGTTTATGGGGTTCGGAGCGAA
TTGGGTCTCGCGATCGAACGAGCTGAAAAACTTGAAAGGCTCCATGGTGG
CTAACCTCGTAATGCAGGGTGAGTTTGGGCCGGAGGCGGGGCTGTGGCTA
TTGTCACATATTCTATACGGCGATTTGAAGGTGTCCAGCGAGAGTGAAAA
TGGGTTGATACAAAGTCTGGCTACTGACTCGGAGGGGTTGAAAATCAGCG
TCGCCATTGATGCGGGAATCGTGGCATCAATCCACGCTGCGACTGATGGG
GGGACAGTGTTCCTTTGCCTCAGCAGAACCAAAGTGTTTACACTGAAACG
AGCGGGAGGAGTGCTCAAGGCGAGTCCATGCAACGTTGACGTGCAGGATA
TGAAGGGCTGTTCTCTGTCGCCGCGCCGAGCCGTGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:319712..321502-

>Gvermi5843.t1 ID=Gvermi5843.t1|Name=Gvermi5843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_1708:319712..321502- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCAGGAATCCCAGGTGAGGGGGCTGTCGTTTCGTCCAGAAAAAGT
TCCTAATTTTGAAGAGTGGGCTGCAGATGTAAAACTCGAAATAAGAGGTG
ATCCCACAGAAAATGCTTTTGAAGTGGACTGGATTGGGCAAACGAGACAA
GTTTCAAGTGCTAAGGAGTTTGTTGAAAACATATTGAAGATCCTCGCAGT
GACACAAAGTCCATCGTACCGAAACCGACTGTGTTGGGGTGCGAAATTCT
CCGTGGACAGTGATGTGTTAGACGAGCAGCTGACACCAGAAAAAGTGGAC
CAAGCTTTCACTTGCTATGGTGAACAATTGGTGATCGGTGTCGTGAAGTC
TAAAAAGACTGATCCCGACTGGCTGGTTGACGGCACAATCTCTATCACGT
CGTATATGTTTCGCATGACCAAGAACGTGGATTGTTTCCTAGACGAAAGT
GGCGCAAAGTGGGGTGGTGACACAGTGGGAATCAGCTGCACAGCAATTGT
TGACGGTTCAGAATGTATTCCTAATGTGTTGTTGTCAACGCCCGGTGCTA
CGTTACTCTCAAAATTCATTCGCGCGATGGTTGTTACCAACCTCGGGGTC
GAATCATCAGAGGTTTTGTGGTTTAAAGTGCTTGTTCAGATGAGTGAACA
AACGGAAATGTTGTCGAAAACATTGTCTGCCTTTGCGCAGGTGTGGGATA
TTGATTATGAGCAGCTTCTTGGTGATGCTGATCGGGTGTGGGAATGGGTT
GAAAGCTCTTTCACAGGAGAGCAATTGGAGCTGTCGCGAAACATTGCAAA
TGCGCTGTTTGCGTTACCGTTCCATGACCGTGACGGTCCCAAGTCACTTT
GCGCAAAGCAGCGCCCGCTGCCAGTTACACTTGACGGCTTCCATCATCTA
AGCGACACTGAAGGGTGGAAGTACGTCGCGCGGCATTTTTGGCTCTCGTT
TCGAACGATTTCGCTGGACATTGAACAAAGTGCCAAGATTTACTACTATG
ATATTCTTTATCGCTACTTGATTGAAGAAGAGATCGCTCTGAAAGGCGCC
GATGAGCACGATGTTGCCGTGCTGAAGGAGTACTTGTCCGATCTCGACGC
AGAGGGCCATTTAGACCCTTGCCCAAAACCGTTTGTAGAACACTTGGCCG
GAGAAACATTGGCTCAGGATGCTCTGCAGAAGGACTGCAGAGTAGCTCAG
ATCCGGCTTGAAGCACGCGCGTCTTCAACCATCGAGCTCACAACTGCGAC
CACTTTCCCAGTTCGGGTGAATGGGCGTAGGGCGAGGTTGGTCATAACAG
AGGGGTCTGAACTACTTATTCGAGGAAAAGACGTAGTACGCATTGCTCAG
AACATCGGTAGCGCACTGCAGGGAGTGTCGTTTATGGGGTTCGGAGCGAA
TTGGGTCTCGCGATCGAACGAGCTGAAAAACTTGAAAGGCTCCATGGTGG
CTAACCTCGTAATGCAGGGTGAGTTTGGGCCGGAGGCGGGGCTGTGGCTA
TTGTCACATATTCTATACGGCGATTTGAAGGTGTCCAGCGAGAGTGAAAA
TGGGTTGATACAAAGTCTGGCTACTGACTCGGAGGGGTTGAAAATCAGCG
TCGCCATTGATGCGGGAATCGTGGCATCAATCCACGCTGCGACTGATGGG
GGGACAGTGTTCCTTTGCCTCAGCAGAACCAAAGTGTTTACACTGAAACG
AGCGGGAGGAGTGCTCAAGGCGAGTCCATGCAACGTTGACGTGCAGGATA
TGAAGGGCTGTTCTCTGTCGCCGCGCCGAGCCGTGAGCTGA
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