Gvermi5828.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5828.t1
Unique NameGvermi5828.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:257009..258247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0201635
PFAMsPkinase
Max annot lvl554915|Amoebozoa
KEGG koko:K04371
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
GOsGO:0000003,GO:0000165,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007186,GO:0007267,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010646,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0019954,GO:0023014,GO:0023052,GO:0030587,GO:0031152,GO:0031153,GO:0031156,GO:0031157,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032104,GO:0032107,GO:0032502,GO:0033554,GO:0035556,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043327,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0048583,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0060176,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071496,GO:0071704,GO:0080134,GO:0080135,GO:0090702,GO:0098542,GO:0098630,GO:0098743,GO:0099120,GO:0110094,GO:0140096,GO:1901564
Evalue1.13e-106
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,3XDW6@554915|Amoebozoa
EC2.7.11.24
DescriptionExtracellular signal-regulated kinase 1
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5828Gvermi5828Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 257009..258247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5828.t1.stop1Gvermi5828.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 257009..257011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5828.t1.CDS1Gvermi5828.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 257009..258247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5828.t1.exon1Gvermi5828.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 257009..258247 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5828.t1.start1Gvermi5828.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 258245..258247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5828.t1Gvermi5828.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 257009..258247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5828.t1 ID=Gvermi5828.t1|Name=Gvermi5828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=413bp
MQVDTDVETAEHHHAQPQHQPHQPPLNESVIQQVPLHPAVPGMPAPLRLY
YIAGFEFECPQRYTVDRVIGRGAYGMVCAAIDHVRKEMVAIKRINGVTQD
LIDCKRTLREMLLLRHFSHEHIVTLKDVYLPTRDLQNFQEVYFVTDLMEF
DLHQLITSNQPISADHTQYLTYQLLNGLKYIHSAGVLHRDLKPSNILLTQ
QCQLKICDFGLARDAPRDEAMQERMTAYVATRWYRAPEILLGGRYSEAVD
VWSVGCILAEIVLRRPLFPGNACHQQMITVAQTIGPPPQSMVRDLCTPPA
QLFVEKHLKHFPERNVRDLFPHAPEALRDILALMLEYDPRKRITVIQAFQ
HPYLFALHDVADEPTCERKFNGNLDGYTLPILAQMIWRESELYRARREAE
DQEAQFDPMAIR*
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spliced messenger RNA

>Gvermi5828.t1 ID=Gvermi5828.t1|Name=Gvermi5828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_1708:257009..258247- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGGACACGGACGTAGAAACCGCCGAACACCACCACGCGCAGCC
GCAGCACCAACCTCACCAGCCACCGCTCAATGAAAGTGTCATACAGCAAG
TCCCCCTACACCCTGCCGTCCCCGGCATGCCTGCTCCTCTCAGGCTGTAC
TACATCGCCGGCTTTGAGTTTGAATGCCCCCAACGTTACACCGTCGATCG
CGTGATCGGCCGCGGCGCGTACGGAATGGTATGCGCCGCCATCGATCACG
TCCGCAAGGAGATGGTCGCCATCAAGAGAATCAACGGCGTCACGCAAGAC
CTCATCGATTGCAAACGCACGCTGCGCGAAATGCTGCTGCTCCGCCACTT
CAGCCATGAGCATATTGTTACTCTCAAGGATGTGTACCTTCCCACGAGAG
ATTTGCAAAACTTTCAAGAAGTGTACTTTGTCACAGATCTCATGGAATTC
GATCTGCACCAACTCATAACCAGCAACCAGCCGATCAGCGCCGATCACAC
CCAGTATCTCACATACCAATTGCTCAACGGGCTGAAGTACATCCACTCCG
CTGGCGTGCTGCACCGTGACCTTAAGCCGTCTAACATACTTCTTACTCAG
CAATGTCAGCTAAAAATATGTGACTTCGGATTGGCGCGCGATGCTCCGCG
GGACGAGGCCATGCAAGAGCGAATGACCGCTTACGTTGCCACGCGTTGGT
ACAGGGCGCCGGAAATCCTGCTCGGCGGTCGTTACTCGGAGGCGGTGGAC
GTGTGGAGCGTTGGCTGCATCCTTGCCGAAATCGTTCTGCGGCGGCCGCT
TTTCCCAGGAAACGCCTGTCACCAGCAGATGATCACCGTGGCGCAGACCA
TCGGCCCGCCGCCGCAGAGCATGGTGCGCGATCTGTGCACGCCGCCCGCG
CAGTTGTTCGTGGAGAAACACCTCAAGCACTTCCCCGAGCGCAACGTGAG
GGATCTGTTTCCACATGCACCCGAGGCGCTGCGTGACATCTTGGCGCTAA
TGTTGGAGTATGATCCCCGCAAACGGATCACGGTGATACAGGCGTTTCAG
CACCCGTACCTTTTTGCGCTGCACGATGTGGCTGACGAGCCTACCTGTGA
GCGAAAGTTCAACGGCAATCTGGACGGTTATACACTGCCCATTTTGGCGC
AGATGATATGGCGCGAGTCGGAACTGTATAGGGCGCGGAGAGAGGCTGAA
GACCAGGAGGCGCAGTTCGATCCAATGGCGATCAGGTGA
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protein sequence of Gvermi5828.t1

>Gvermi5828.t1 ID=Gvermi5828.t1|Name=Gvermi5828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=413bp
MQVDTDVETAEHHHAQPQHQPHQPPLNESVIQQVPLHPAVPGMPAPLRLY
YIAGFEFECPQRYTVDRVIGRGAYGMVCAAIDHVRKEMVAIKRINGVTQD
LIDCKRTLREMLLLRHFSHEHIVTLKDVYLPTRDLQNFQEVYFVTDLMEF
DLHQLITSNQPISADHTQYLTYQLLNGLKYIHSAGVLHRDLKPSNILLTQ
QCQLKICDFGLARDAPRDEAMQERMTAYVATRWYRAPEILLGGRYSEAVD
VWSVGCILAEIVLRRPLFPGNACHQQMITVAQTIGPPPQSMVRDLCTPPA
QLFVEKHLKHFPERNVRDLFPHAPEALRDILALMLEYDPRKRITVIQAFQ
HPYLFALHDVADEPTCERKFNGNLDGYTLPILAQMIWRESELYRARREAE
DQEAQFDPMAIR*
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mRNA from alignment at ScGOVlb_1708:257009..258247-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5828.t1 ID=Gvermi5828.t1|Name=Gvermi5828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_1708:257009..258247- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTGGACACGGACGTAGAAACCGCCGAACACCACCACGCGCAGCC
GCAGCACCAACCTCACCAGCCACCGCTCAATGAAAGTGTCATACAGCAAG
TCCCCCTACACCCTGCCGTCCCCGGCATGCCTGCTCCTCTCAGGCTGTAC
TACATCGCCGGCTTTGAGTTTGAATGCCCCCAACGTTACACCGTCGATCG
CGTGATCGGCCGCGGCGCGTACGGAATGGTATGCGCCGCCATCGATCACG
TCCGCAAGGAGATGGTCGCCATCAAGAGAATCAACGGCGTCACGCAAGAC
CTCATCGATTGCAAACGCACGCTGCGCGAAATGCTGCTGCTCCGCCACTT
CAGCCATGAGCATATTGTTACTCTCAAGGATGTGTACCTTCCCACGAGAG
ATTTGCAAAACTTTCAAGAAGTGTACTTTGTCACAGATCTCATGGAATTC
GATCTGCACCAACTCATAACCAGCAACCAGCCGATCAGCGCCGATCACAC
CCAGTATCTCACATACCAATTGCTCAACGGGCTGAAGTACATCCACTCCG
CTGGCGTGCTGCACCGTGACCTTAAGCCGTCTAACATACTTCTTACTCAG
CAATGTCAGCTAAAAATATGTGACTTCGGATTGGCGCGCGATGCTCCGCG
GGACGAGGCCATGCAAGAGCGAATGACCGCTTACGTTGCCACGCGTTGGT
ACAGGGCGCCGGAAATCCTGCTCGGCGGTCGTTACTCGGAGGCGGTGGAC
GTGTGGAGCGTTGGCTGCATCCTTGCCGAAATCGTTCTGCGGCGGCCGCT
TTTCCCAGGAAACGCCTGTCACCAGCAGATGATCACCGTGGCGCAGACCA
TCGGCCCGCCGCCGCAGAGCATGGTGCGCGATCTGTGCACGCCGCCCGCG
CAGTTGTTCGTGGAGAAACACCTCAAGCACTTCCCCGAGCGCAACGTGAG
GGATCTGTTTCCACATGCACCCGAGGCGCTGCGTGACATCTTGGCGCTAA
TGTTGGAGTATGATCCCCGCAAACGGATCACGGTGATACAGGCGTTTCAG
CACCCGTACCTTTTTGCGCTGCACGATGTGGCTGACGAGCCTACCTGTGA
GCGAAAGTTCAACGGCAATCTGGACGGTTATACACTGCCCATTTTGGCGC
AGATGATATGGCGCGAGTCGGAACTGTATAGGGCGCGGAGAGAGGCTGAA
GACCAGGAGGCGCAGTTCGATCCAATGGCGATCAGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:257009..258247-

>Gvermi5828.t1 ID=Gvermi5828.t1|Name=Gvermi5828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1239bp|location=Sequence derived from alignment at ScGOVlb_1708:257009..258247- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTGGACACGGACGTAGAAACCGCCGAACACCACCACGCGCAGCC
GCAGCACCAACCTCACCAGCCACCGCTCAATGAAAGTGTCATACAGCAAG
TCCCCCTACACCCTGCCGTCCCCGGCATGCCTGCTCCTCTCAGGCTGTAC
TACATCGCCGGCTTTGAGTTTGAATGCCCCCAACGTTACACCGTCGATCG
CGTGATCGGCCGCGGCGCGTACGGAATGGTATGCGCCGCCATCGATCACG
TCCGCAAGGAGATGGTCGCCATCAAGAGAATCAACGGCGTCACGCAAGAC
CTCATCGATTGCAAACGCACGCTGCGCGAAATGCTGCTGCTCCGCCACTT
CAGCCATGAGCATATTGTTACTCTCAAGGATGTGTACCTTCCCACGAGAG
ATTTGCAAAACTTTCAAGAAGTGTACTTTGTCACAGATCTCATGGAATTC
GATCTGCACCAACTCATAACCAGCAACCAGCCGATCAGCGCCGATCACAC
CCAGTATCTCACATACCAATTGCTCAACGGGCTGAAGTACATCCACTCCG
CTGGCGTGCTGCACCGTGACCTTAAGCCGTCTAACATACTTCTTACTCAG
CAATGTCAGCTAAAAATATGTGACTTCGGATTGGCGCGCGATGCTCCGCG
GGACGAGGCCATGCAAGAGCGAATGACCGCTTACGTTGCCACGCGTTGGT
ACAGGGCGCCGGAAATCCTGCTCGGCGGTCGTTACTCGGAGGCGGTGGAC
GTGTGGAGCGTTGGCTGCATCCTTGCCGAAATCGTTCTGCGGCGGCCGCT
TTTCCCAGGAAACGCCTGTCACCAGCAGATGATCACCGTGGCGCAGACCA
TCGGCCCGCCGCCGCAGAGCATGGTGCGCGATCTGTGCACGCCGCCCGCG
CAGTTGTTCGTGGAGAAACACCTCAAGCACTTCCCCGAGCGCAACGTGAG
GGATCTGTTTCCACATGCACCCGAGGCGCTGCGTGACATCTTGGCGCTAA
TGTTGGAGTATGATCCCCGCAAACGGATCACGGTGATACAGGCGTTTCAG
CACCCGTACCTTTTTGCGCTGCACGATGTGGCTGACGAGCCTACCTGTGA
GCGAAAGTTCAACGGCAATCTGGACGGTTATACACTGCCCATTTTGGCGC
AGATGATATGGCGCGAGTCGGAACTGTATAGGGCGCGGAGAGAGGCTGAA
GACCAGGAGGCGCAGTTCGATCCAATGGCGATCAGGTGA
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