Gvermi5810.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5810.t1
Unique NameGvermi5810.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:149981..151132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog243090.RB11150
PFAMsOxidored_FMN
Max annot lvl203682|Planctomycetes
KEGG rclassRC00250
KEGG koko:K10680
KEGG ReactionR08014,R08017,R08042
KEGG Pathwayko00633,ko01120,map00633,map01120
Evalue1.25e-137
EggNOG OGsCOG1902@1|root,COG1902@2|Bacteria,2IYAT@203682|Planctomycetes
DescriptionCOG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5810Gvermi5810Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 149981..151132 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5810.t1.stop1Gvermi5810.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 149981..149983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5810.t1.CDS1Gvermi5810.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 149981..151132 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5810.t1.exon1Gvermi5810.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 149981..151132 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5810.t1.start1Gvermi5810.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 151130..151132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5810.t1Gvermi5810.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 149981..151132 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5810.t1 ID=Gvermi5810.t1|Name=Gvermi5810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp
MASYPNLLSPIHLGGSLNLKNRIAMAPMTRGRAGEKLMANELMAEYYAQR
ASAGLVITEGTHTSVVARGWFQAPDIFEPEHAEAWKIVTDRVHERDGKIF
CQLWHTGRASHSSFREGVSGYEGDMKLAVAPSAIKRASRSGKQACTNLPG
EVDIETPRALTLEEVQALPEEYRNAAQCAKDAGFDGVELHCANGYLLDEF
LESVSNHRDDKYGGSMENRFRIVDEILRKVLTVFEPHQVGLRLSPNGVFN
GMGSDDYRESFLYYAERLAGYKLGYLHIMIGLGFGFHEKGEPMTMADFRK
VYPGVLMANVGYDAKSAEEEIAAGHADMVSFGRPFISNPDFVERISTGAE
LAEPAPQSVYYSSVENVLTSEGYTDYPTAKAES*
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spliced messenger RNA

>Gvermi5810.t1 ID=Gvermi5810.t1|Name=Gvermi5810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at ScGOVlb_1708:149981..151132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAGCTACCCAAATCTTCTTTCCCCCATTCACCTTGGTGGCTCGCT
CAATCTGAAGAACCGCATCGCCATGGCACCAATGACACGCGGCCGCGCCG
GTGAAAAACTTATGGCCAACGAGCTGATGGCCGAATATTACGCCCAGCGC
GCCTCCGCTGGTCTCGTGATCACCGAGGGCACCCACACATCTGTCGTCGC
TCGCGGCTGGTTTCAGGCGCCGGACATCTTCGAACCCGAGCACGCAGAGG
CCTGGAAGATTGTCACGGACCGTGTTCACGAGCGAGACGGCAAGATCTTT
TGTCAGCTGTGGCACACGGGCCGCGCCAGTCACTCCTCCTTTCGCGAGGG
GGTGAGTGGCTACGAGGGAGACATGAAACTGGCAGTGGCGCCGTCTGCAA
TCAAGCGCGCCAGTCGCTCTGGAAAGCAAGCCTGCACCAACTTACCCGGT
GAGGTCGACATCGAAACGCCGCGTGCATTGACGCTGGAGGAGGTCCAGGC
GCTCCCCGAGGAGTATCGTAATGCTGCGCAGTGCGCAAAGGATGCCGGCT
TCGATGGTGTCGAACTCCACTGCGCAAACGGATACCTTTTGGATGAGTTC
TTGGAGAGTGTTTCGAACCATCGCGACGACAAGTATGGCGGCAGTATGGA
AAATCGGTTCCGCATTGTCGATGAAATTTTGCGCAAGGTGCTGACGGTGT
TCGAGCCGCATCAGGTTGGACTGCGTCTCTCGCCCAACGGCGTGTTCAAC
GGGATGGGGTCTGATGACTACCGCGAGTCGTTTTTGTACTACGCCGAACG
GCTAGCTGGATACAAGCTGGGATACCTTCACATAATGATCGGTTTGGGCT
TCGGTTTTCACGAGAAGGGAGAACCAATGACCATGGCAGATTTCCGCAAA
GTGTACCCTGGTGTGCTCATGGCGAACGTTGGTTATGATGCAAAGTCCGC
TGAGGAGGAAATCGCCGCGGGACACGCGGACATGGTTTCGTTTGGAAGAC
CGTTCATCAGCAACCCGGATTTTGTGGAACGCATTTCGACTGGGGCGGAA
CTTGCTGAACCGGCGCCGCAGTCGGTGTACTACTCCTCCGTGGAAAATGT
GTTGACCAGCGAAGGCTACACTGATTATCCTACGGCGAAGGCAGAGTCGT
GA
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protein sequence of Gvermi5810.t1

>Gvermi5810.t1 ID=Gvermi5810.t1|Name=Gvermi5810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=384bp
MASYPNLLSPIHLGGSLNLKNRIAMAPMTRGRAGEKLMANELMAEYYAQR
ASAGLVITEGTHTSVVARGWFQAPDIFEPEHAEAWKIVTDRVHERDGKIF
CQLWHTGRASHSSFREGVSGYEGDMKLAVAPSAIKRASRSGKQACTNLPG
EVDIETPRALTLEEVQALPEEYRNAAQCAKDAGFDGVELHCANGYLLDEF
LESVSNHRDDKYGGSMENRFRIVDEILRKVLTVFEPHQVGLRLSPNGVFN
GMGSDDYRESFLYYAERLAGYKLGYLHIMIGLGFGFHEKGEPMTMADFRK
VYPGVLMANVGYDAKSAEEEIAAGHADMVSFGRPFISNPDFVERISTGAE
LAEPAPQSVYYSSVENVLTSEGYTDYPTAKAES*
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mRNA from alignment at ScGOVlb_1708:149981..151132-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5810.t1 ID=Gvermi5810.t1|Name=Gvermi5810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at ScGOVlb_1708:149981..151132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAGCTACCCAAATCTTCTTTCCCCCATTCACCTTGGTGGCTCGCT
CAATCTGAAGAACCGCATCGCCATGGCACCAATGACACGCGGCCGCGCCG
GTGAAAAACTTATGGCCAACGAGCTGATGGCCGAATATTACGCCCAGCGC
GCCTCCGCTGGTCTCGTGATCACCGAGGGCACCCACACATCTGTCGTCGC
TCGCGGCTGGTTTCAGGCGCCGGACATCTTCGAACCCGAGCACGCAGAGG
CCTGGAAGATTGTCACGGACCGTGTTCACGAGCGAGACGGCAAGATCTTT
TGTCAGCTGTGGCACACGGGCCGCGCCAGTCACTCCTCCTTTCGCGAGGG
GGTGAGTGGCTACGAGGGAGACATGAAACTGGCAGTGGCGCCGTCTGCAA
TCAAGCGCGCCAGTCGCTCTGGAAAGCAAGCCTGCACCAACTTACCCGGT
GAGGTCGACATCGAAACGCCGCGTGCATTGACGCTGGAGGAGGTCCAGGC
GCTCCCCGAGGAGTATCGTAATGCTGCGCAGTGCGCAAAGGATGCCGGCT
TCGATGGTGTCGAACTCCACTGCGCAAACGGATACCTTTTGGATGAGTTC
TTGGAGAGTGTTTCGAACCATCGCGACGACAAGTATGGCGGCAGTATGGA
AAATCGGTTCCGCATTGTCGATGAAATTTTGCGCAAGGTGCTGACGGTGT
TCGAGCCGCATCAGGTTGGACTGCGTCTCTCGCCCAACGGCGTGTTCAAC
GGGATGGGGTCTGATGACTACCGCGAGTCGTTTTTGTACTACGCCGAACG
GCTAGCTGGATACAAGCTGGGATACCTTCACATAATGATCGGTTTGGGCT
TCGGTTTTCACGAGAAGGGAGAACCAATGACCATGGCAGATTTCCGCAAA
GTGTACCCTGGTGTGCTCATGGCGAACGTTGGTTATGATGCAAAGTCCGC
TGAGGAGGAAATCGCCGCGGGACACGCGGACATGGTTTCGTTTGGAAGAC
CGTTCATCAGCAACCCGGATTTTGTGGAACGCATTTCGACTGGGGCGGAA
CTTGCTGAACCGGCGCCGCAGTCGGTGTACTACTCCTCCGTGGAAAATGT
GTTGACCAGCGAAGGCTACACTGATTATCCTACGGCGAAGGCAGAGTCGT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:149981..151132-

>Gvermi5810.t1 ID=Gvermi5810.t1|Name=Gvermi5810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1152bp|location=Sequence derived from alignment at ScGOVlb_1708:149981..151132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAGCTACCCAAATCTTCTTTCCCCCATTCACCTTGGTGGCTCGCT
CAATCTGAAGAACCGCATCGCCATGGCACCAATGACACGCGGCCGCGCCG
GTGAAAAACTTATGGCCAACGAGCTGATGGCCGAATATTACGCCCAGCGC
GCCTCCGCTGGTCTCGTGATCACCGAGGGCACCCACACATCTGTCGTCGC
TCGCGGCTGGTTTCAGGCGCCGGACATCTTCGAACCCGAGCACGCAGAGG
CCTGGAAGATTGTCACGGACCGTGTTCACGAGCGAGACGGCAAGATCTTT
TGTCAGCTGTGGCACACGGGCCGCGCCAGTCACTCCTCCTTTCGCGAGGG
GGTGAGTGGCTACGAGGGAGACATGAAACTGGCAGTGGCGCCGTCTGCAA
TCAAGCGCGCCAGTCGCTCTGGAAAGCAAGCCTGCACCAACTTACCCGGT
GAGGTCGACATCGAAACGCCGCGTGCATTGACGCTGGAGGAGGTCCAGGC
GCTCCCCGAGGAGTATCGTAATGCTGCGCAGTGCGCAAAGGATGCCGGCT
TCGATGGTGTCGAACTCCACTGCGCAAACGGATACCTTTTGGATGAGTTC
TTGGAGAGTGTTTCGAACCATCGCGACGACAAGTATGGCGGCAGTATGGA
AAATCGGTTCCGCATTGTCGATGAAATTTTGCGCAAGGTGCTGACGGTGT
TCGAGCCGCATCAGGTTGGACTGCGTCTCTCGCCCAACGGCGTGTTCAAC
GGGATGGGGTCTGATGACTACCGCGAGTCGTTTTTGTACTACGCCGAACG
GCTAGCTGGATACAAGCTGGGATACCTTCACATAATGATCGGTTTGGGCT
TCGGTTTTCACGAGAAGGGAGAACCAATGACCATGGCAGATTTCCGCAAA
GTGTACCCTGGTGTGCTCATGGCGAACGTTGGTTATGATGCAAAGTCCGC
TGAGGAGGAAATCGCCGCGGGACACGCGGACATGGTTTCGTTTGGAAGAC
CGTTCATCAGCAACCCGGATTTTGTGGAACGCATTTCGACTGGGGCGGAA
CTTGCTGAACCGGCGCCGCAGTCGGTGTACTACTCCTCCGTGGAAAATGT
GTTGACCAGCGAAGGCTACACTGATTATCCTACGGCGAAGGCAGAGTCGT
GA
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