Gvermi5763.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5763.t1
Unique NameGvermi5763.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1527267..1527709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5763Gvermi5763Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 1527267..1527709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1Gvermi5763.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 1527267..1527709 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1.stop1Gvermi5763.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 1527267..1527269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1.CDS1Gvermi5763.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1527267..1527403 -
Gvermi5763.t1.CDS2Gvermi5763.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1527478..1527494 -
Gvermi5763.t1.CDS3Gvermi5763.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1527573..1527709 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1.exon1Gvermi5763.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1527267..1527403 -
Gvermi5763.t1.exon2Gvermi5763.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1527478..1527494 -
Gvermi5763.t1.exon3Gvermi5763.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1527573..1527709 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1.intron1Gvermi5763.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 1527404..1527477 -
Gvermi5763.t1.intron2Gvermi5763.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 1527495..1527572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5763.t1.start1Gvermi5763.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 1527707..1527709 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5763.t1 ID=Gvermi5763.t1|Name=Gvermi5763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=97bp
MSPRALRRDDHIRISANTKSMSAQGSGSQNRNTDEQIVCPVSGCAKSFKS
NQSYSRHRNAIHRGGSGTEKGNISCPHCVNTFDTPSGLSNHVKKNH*
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spliced messenger RNA

>Gvermi5763.t1 ID=Gvermi5763.t1|Name=Gvermi5763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp|location=Sequence derived from alignment at ScGOVlb_776:1527267..1527709- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCCGCGCATTACGCAGGGACGATCATATTCGAATTTCGGCAAA
CACAAAAAGCATGTCCGCACAGGGCTCAGGGTCTCAGAATCGAAACACCG
ATGAGCAAATAGTTTGCCCGGTTTCAGGATGTGCAAAATCATTCAAATCC
AACCAATCGTACAGTCGTCATCGTAATGCCATTCATCGTGGTGGATCGGG
AACGGAAAAGGGAAATATCTCTTGCCCGCACTGCGTAAATACGTTTGACA
CGCCATCGGGCTTGTCAAATCACGTGAAGAAAAACCATTGA
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protein sequence of Gvermi5763.t1

>Gvermi5763.t1 ID=Gvermi5763.t1|Name=Gvermi5763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=97bp
MSPRALRRDDHIRISANTKSMSAQGSGSQNRNTDEQIVCPVSGCAKSFKS
NQSYSRHRNAIHRGGSGTEKGNISCPHCVNTFDTPSGLSNHVKKNH*
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mRNA from alignment at ScGOVlb_776:1527267..1527709-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5763.t1 ID=Gvermi5763.t1|Name=Gvermi5763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=443bp|location=Sequence derived from alignment at ScGOVlb_776:1527267..1527709- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCCCGCGCATTACGCAGGGACGATCATATTCGAATTTCGGCAAA
CACAAAAAGCATGTCCGCACAGGGCTCAGGGTCTCAGAATCGAAACACCG
ATGAGCAAATAGTTTGCCCGGTTTCAGGATGTGCAAAGTAGGTTATGTGT
CAAACTAACTGTTCTTCATCGCCGGATGCACTGACATTTATTGGGTCCAA
CGCGAATACCCGAAGATCATTCAAATCCAACCGTATGTAGGAAGTTTCTA
AGCACTTGATTTCGCTGTACCTATTGACTAACAACTCTTGATTCCCTTCC
CGCCAGAATCGTACAGTCGTCATCGTAATGCCATTCATCGTGGTGGATCG
GGAACGGAAAAGGGAAATATCTCTTGCCCGCACTGCGTAAATACGTTTGA
CACGCCATCGGGCTTGTCAAATCACGTGAAGAAAAACCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:1527267..1527709-

>Gvermi5763.t1 ID=Gvermi5763.t1|Name=Gvermi5763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=291bp|location=Sequence derived from alignment at ScGOVlb_776:1527267..1527709- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCCCGCGCATTACGCAGGGACGATCATATTCGAATTTCGGCAAA
CACAAAAAGCATGTCCGCACAGGGCTCAGGGTCTCAGAATCGAAACACCG
ATGAGCAAATAGTTTGCCCGGTTTCAGGATGTGCAAAATCATTCAAATCC
AACCAATCGTACAGTCGTCATCGTAATGCCATTCATCGTGGTGGATCGGG
AACGGAAAAGGGAAATATCTCTTGCCCGCACTGCGTAAATACGTTTGACA
CGCCATCGGGCTTGTCAAATCACGTGAAGAAAAACCATTGA
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