Gvermi5725.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5725.t1
Unique Name	Gvermi5725.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_776	contig	ScGOVlb_776:1274747..1276663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7070.TC003445-PA
Preferred name	RFWD3
PFAMs	zf-RING_2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15691
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020
Evalue	9.58e-24
EggNOG OGs	KOG1645@1\|root,KOG1645@2759\|Eukaryota,39MKS@33154\|Opisthokonta,3BE0K@33208\|Metazoa,3CV8T@33213\|Bilateria,41VDD@6656\|Arthropoda,3SGZQ@50557\|Insecta
EC	2.3.2.27
Description	Zinc ion binding
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5725	Gvermi5725	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_776 1274747..1276663 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5725.t1.start1	Gvermi5725.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_776 1274747..1274749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5725.t1.CDS1	Gvermi5725.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_776 1274747..1276663 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5725.t1.exon1	Gvermi5725.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_776 1274747..1276663 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5725.t1.stop1	Gvermi5725.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_776 1276661..1276663 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5725.t1	Gvermi5725.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_776 1274747..1276663 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_776:1274747..1276663+
coding sequence from alignment at ScGOVlb_776:1274747..1276663+

mRNA sequence

>Gvermi5725.t1 ID=Gvermi5725.t1|Name=Gvermi5725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=639bp
MPSPEAPQYASPPPSPDPPQASERLTPAQATTSVSIVPPAEHPLETDRIH
GGPAPSSHPDEPLSVNDHNNVQAPNGTPDVQLIPSSDESEGPSPSPVIKR
RRTTTTRPASQPNNNISTIASQEEGNCCTICLERWTSSGPHQVCCMPCGH
LFGYKCIKEWILGGNSRKRECPTCKTPARVKDLRYLFGLPSRLEVADVSE
MQRLRDELKREKVSHERTKVKYEETKKLAKVYREEMRNLQRLTKSSVQTF
GHENPPPRVEHMDSVRLVAVHRTAGASLAVAVDQDASYLFNERVPGDSLR
HRIGRVDVGRPNVPIHSPQAAEKRVNCIEICSHPHRADHRHIAVASTDNS
VNILAPNLLRATTLRLPGIPLSCSWLSNRPHLIAVGLVSGTVLMYDVRQT
STALYKSTLSRNQGSRAVHSLAEIQLVDSRTSSTVLAAASPLGVFGISFD
GYMDTPNVCAVRGGVPDDWASTSFTVSGNMIAVAAKRPSMMGYASQELGC
SLSMHSGLIREGPDLRFGPSLGEPVYTASQSVPFVYCGIVDGNENHSDTI
LAYPNKNAKDKLSVWAFKRDSYEGSPSWKQQEVVSELQTQYQSNSDVRAA
AGLRLPRTARINGVPDGSRGIFVTVGGDIIRVFAAGKY*

spliced messenger RNA

>Gvermi5725.t1 ID=Gvermi5725.t1|Name=Gvermi5725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at ScGOVlb_776:1274747..1276663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTCCGGAAGCACCTCAATACGCCTCACCGCCACCTTCACCCGA
CCCCCCACAGGCATCGGAGCGGCTTACTCCTGCACAAGCAACCACGTCAG
TTTCTATCGTCCCGCCTGCTGAACACCCGTTAGAAACGGATCGAATACAT
GGTGGTCCAGCCCCCAGCTCGCATCCGGACGAGCCGTTGTCCGTTAATGA
CCACAACAACGTGCAAGCACCAAACGGTACCCCTGATGTACAGCTCATTC
CTAGTTCAGATGAATCAGAGGGTCCTAGTCCATCCCCCGTGATCAAGCGT
CGCCGAACAACCACAACCCGTCCAGCTTCACAACCAAACAACAACATTAG
TACCATCGCATCTCAAGAAGAAGGAAACTGTTGTACAATTTGTTTGGAGC
GTTGGACAAGTTCTGGGCCACACCAAGTGTGCTGCATGCCGTGTGGCCAC
CTGTTCGGATACAAGTGCATAAAAGAATGGATTTTGGGAGGCAACTCTCG
CAAACGAGAATGTCCCACCTGCAAAACACCTGCGCGTGTGAAAGATTTGA
GATACCTTTTTGGCCTTCCGTCCCGATTGGAAGTAGCTGATGTCTCCGAA
ATGCAGCGACTGCGAGATGAGCTCAAGCGGGAAAAGGTATCCCATGAGCG
AACCAAGGTAAAGTACGAGGAAACCAAAAAACTGGCCAAGGTATACCGGG
AGGAGATGCGAAACCTCCAACGTCTTACAAAGTCTTCCGTTCAAACTTTT
GGACACGAGAATCCACCGCCACGCGTTGAGCACATGGACAGCGTCCGGCT
TGTTGCTGTGCATCGGACCGCCGGGGCTTCCCTGGCTGTGGCAGTTGACC
AGGACGCATCATACTTGTTCAATGAACGGGTTCCTGGAGACAGCTTGCGC
CATCGAATAGGCCGGGTTGACGTCGGAAGACCTAATGTACCAATTCACTC
GCCACAAGCTGCAGAGAAGCGGGTAAACTGTATAGAAATTTGTAGCCATC
CTCACAGAGCGGATCACAGACACATTGCTGTCGCAAGCACTGACAACAGC
GTCAACATATTAGCGCCAAACCTCTTGCGTGCAACTACTCTCCGTCTACC
TGGAATCCCGCTGTCATGTTCTTGGCTTTCCAACCGTCCGCACTTGATTG
CGGTTGGACTTGTGTCTGGAACAGTCTTGATGTATGATGTGAGACAAACA
TCTACAGCCCTGTACAAATCAACCCTGTCTCGGAACCAAGGATCGCGAGC
TGTTCACTCTTTGGCGGAGATTCAACTTGTTGACTCGCGCACTTCCTCCA
CTGTCTTAGCAGCTGCTTCACCGCTGGGAGTTTTTGGAATCTCGTTTGAT
GGCTACATGGACACACCCAACGTATGTGCAGTCCGCGGTGGCGTGCCAGA
TGACTGGGCTTCAACCAGTTTTACGGTCAGTGGAAATATGATTGCCGTTG
CTGCAAAGAGGCCCAGCATGATGGGTTACGCGTCTCAGGAATTGGGTTGT
TCCTTATCCATGCACAGCGGCCTAATTCGGGAGGGGCCAGACCTTAGGTT
CGGCCCTTCCCTCGGGGAGCCTGTGTATACCGCTTCGCAAAGCGTGCCGT
TTGTGTATTGTGGTATCGTCGACGGAAACGAAAATCATTCGGATACAATC
CTAGCCTATCCAAACAAGAACGCCAAGGACAAACTGAGTGTGTGGGCTTT
CAAGCGTGATTCGTACGAAGGGAGTCCGAGCTGGAAGCAGCAAGAAGTTG
TTTCAGAATTGCAAACCCAATATCAGAGCAATTCTGACGTAAGAGCAGCT
GCGGGGCTTCGACTACCGCGTACTGCAAGGATAAATGGAGTTCCTGATGG
AAGTCGAGGAATTTTCGTTACTGTAGGCGGTGATATCATCCGAGTATTTG
CGGCAGGGAAGTACTGA

protein sequence of Gvermi5725.t1

>Gvermi5725.t1 ID=Gvermi5725.t1|Name=Gvermi5725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=639bp
MPSPEAPQYASPPPSPDPPQASERLTPAQATTSVSIVPPAEHPLETDRIH
GGPAPSSHPDEPLSVNDHNNVQAPNGTPDVQLIPSSDESEGPSPSPVIKR
RRTTTTRPASQPNNNISTIASQEEGNCCTICLERWTSSGPHQVCCMPCGH
LFGYKCIKEWILGGNSRKRECPTCKTPARVKDLRYLFGLPSRLEVADVSE
MQRLRDELKREKVSHERTKVKYEETKKLAKVYREEMRNLQRLTKSSVQTF
GHENPPPRVEHMDSVRLVAVHRTAGASLAVAVDQDASYLFNERVPGDSLR
HRIGRVDVGRPNVPIHSPQAAEKRVNCIEICSHPHRADHRHIAVASTDNS
VNILAPNLLRATTLRLPGIPLSCSWLSNRPHLIAVGLVSGTVLMYDVRQT
STALYKSTLSRNQGSRAVHSLAEIQLVDSRTSSTVLAAASPLGVFGISFD
GYMDTPNVCAVRGGVPDDWASTSFTVSGNMIAVAAKRPSMMGYASQELGC
SLSMHSGLIREGPDLRFGPSLGEPVYTASQSVPFVYCGIVDGNENHSDTI
LAYPNKNAKDKLSVWAFKRDSYEGSPSWKQQEVVSELQTQYQSNSDVRAA
AGLRLPRTARINGVPDGSRGIFVTVGGDIIRVFAAGKY*

mRNA from alignment at ScGOVlb_776:1274747..1276663+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5725.t1 ID=Gvermi5725.t1|Name=Gvermi5725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at ScGOVlb_776:1274747..1276663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTCCGGAAGCACCTCAATACGCCTCACCGCCACCTTCACCCGA
CCCCCCACAGGCATCGGAGCGGCTTACTCCTGCACAAGCAACCACGTCAG
TTTCTATCGTCCCGCCTGCTGAACACCCGTTAGAAACGGATCGAATACAT
GGTGGTCCAGCCCCCAGCTCGCATCCGGACGAGCCGTTGTCCGTTAATGA
CCACAACAACGTGCAAGCACCAAACGGTACCCCTGATGTACAGCTCATTC
CTAGTTCAGATGAATCAGAGGGTCCTAGTCCATCCCCCGTGATCAAGCGT
CGCCGAACAACCACAACCCGTCCAGCTTCACAACCAAACAACAACATTAG
TACCATCGCATCTCAAGAAGAAGGAAACTGTTGTACAATTTGTTTGGAGC
GTTGGACAAGTTCTGGGCCACACCAAGTGTGCTGCATGCCGTGTGGCCAC
CTGTTCGGATACAAGTGCATAAAAGAATGGATTTTGGGAGGCAACTCTCG
CAAACGAGAATGTCCCACCTGCAAAACACCTGCGCGTGTGAAAGATTTGA
GATACCTTTTTGGCCTTCCGTCCCGATTGGAAGTAGCTGATGTCTCCGAA
ATGCAGCGACTGCGAGATGAGCTCAAGCGGGAAAAGGTATCCCATGAGCG
AACCAAGGTAAAGTACGAGGAAACCAAAAAACTGGCCAAGGTATACCGGG
AGGAGATGCGAAACCTCCAACGTCTTACAAAGTCTTCCGTTCAAACTTTT
GGACACGAGAATCCACCGCCACGCGTTGAGCACATGGACAGCGTCCGGCT
TGTTGCTGTGCATCGGACCGCCGGGGCTTCCCTGGCTGTGGCAGTTGACC
AGGACGCATCATACTTGTTCAATGAACGGGTTCCTGGAGACAGCTTGCGC
CATCGAATAGGCCGGGTTGACGTCGGAAGACCTAATGTACCAATTCACTC
GCCACAAGCTGCAGAGAAGCGGGTAAACTGTATAGAAATTTGTAGCCATC
CTCACAGAGCGGATCACAGACACATTGCTGTCGCAAGCACTGACAACAGC
GTCAACATATTAGCGCCAAACCTCTTGCGTGCAACTACTCTCCGTCTACC
TGGAATCCCGCTGTCATGTTCTTGGCTTTCCAACCGTCCGCACTTGATTG
CGGTTGGACTTGTGTCTGGAACAGTCTTGATGTATGATGTGAGACAAACA
TCTACAGCCCTGTACAAATCAACCCTGTCTCGGAACCAAGGATCGCGAGC
TGTTCACTCTTTGGCGGAGATTCAACTTGTTGACTCGCGCACTTCCTCCA
CTGTCTTAGCAGCTGCTTCACCGCTGGGAGTTTTTGGAATCTCGTTTGAT
GGCTACATGGACACACCCAACGTATGTGCAGTCCGCGGTGGCGTGCCAGA
TGACTGGGCTTCAACCAGTTTTACGGTCAGTGGAAATATGATTGCCGTTG
CTGCAAAGAGGCCCAGCATGATGGGTTACGCGTCTCAGGAATTGGGTTGT
TCCTTATCCATGCACAGCGGCCTAATTCGGGAGGGGCCAGACCTTAGGTT
CGGCCCTTCCCTCGGGGAGCCTGTGTATACCGCTTCGCAAAGCGTGCCGT
TTGTGTATTGTGGTATCGTCGACGGAAACGAAAATCATTCGGATACAATC
CTAGCCTATCCAAACAAGAACGCCAAGGACAAACTGAGTGTGTGGGCTTT
CAAGCGTGATTCGTACGAAGGGAGTCCGAGCTGGAAGCAGCAAGAAGTTG
TTTCAGAATTGCAAACCCAATATCAGAGCAATTCTGACGTAAGAGCAGCT
GCGGGGCTTCGACTACCGCGTACTGCAAGGATAAATGGAGTTCCTGATGG
AAGTCGAGGAATTTTCGTTACTGTAGGCGGTGATATCATCCGAGTATTTG
CGGCAGGGAAGTACTGA

Coding sequence (CDS) from alignment at ScGOVlb_776:1274747..1276663+

>Gvermi5725.t1 ID=Gvermi5725.t1|Name=Gvermi5725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1917bp|location=Sequence derived from alignment at ScGOVlb_776:1274747..1276663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTCCGGAAGCACCTCAATACGCCTCACCGCCACCTTCACCCGA
CCCCCCACAGGCATCGGAGCGGCTTACTCCTGCACAAGCAACCACGTCAG
TTTCTATCGTCCCGCCTGCTGAACACCCGTTAGAAACGGATCGAATACAT
GGTGGTCCAGCCCCCAGCTCGCATCCGGACGAGCCGTTGTCCGTTAATGA
CCACAACAACGTGCAAGCACCAAACGGTACCCCTGATGTACAGCTCATTC
CTAGTTCAGATGAATCAGAGGGTCCTAGTCCATCCCCCGTGATCAAGCGT
CGCCGAACAACCACAACCCGTCCAGCTTCACAACCAAACAACAACATTAG
TACCATCGCATCTCAAGAAGAAGGAAACTGTTGTACAATTTGTTTGGAGC
GTTGGACAAGTTCTGGGCCACACCAAGTGTGCTGCATGCCGTGTGGCCAC
CTGTTCGGATACAAGTGCATAAAAGAATGGATTTTGGGAGGCAACTCTCG
CAAACGAGAATGTCCCACCTGCAAAACACCTGCGCGTGTGAAAGATTTGA
GATACCTTTTTGGCCTTCCGTCCCGATTGGAAGTAGCTGATGTCTCCGAA
ATGCAGCGACTGCGAGATGAGCTCAAGCGGGAAAAGGTATCCCATGAGCG
AACCAAGGTAAAGTACGAGGAAACCAAAAAACTGGCCAAGGTATACCGGG
AGGAGATGCGAAACCTCCAACGTCTTACAAAGTCTTCCGTTCAAACTTTT
GGACACGAGAATCCACCGCCACGCGTTGAGCACATGGACAGCGTCCGGCT
TGTTGCTGTGCATCGGACCGCCGGGGCTTCCCTGGCTGTGGCAGTTGACC
AGGACGCATCATACTTGTTCAATGAACGGGTTCCTGGAGACAGCTTGCGC
CATCGAATAGGCCGGGTTGACGTCGGAAGACCTAATGTACCAATTCACTC
GCCACAAGCTGCAGAGAAGCGGGTAAACTGTATAGAAATTTGTAGCCATC
CTCACAGAGCGGATCACAGACACATTGCTGTCGCAAGCACTGACAACAGC
GTCAACATATTAGCGCCAAACCTCTTGCGTGCAACTACTCTCCGTCTACC
TGGAATCCCGCTGTCATGTTCTTGGCTTTCCAACCGTCCGCACTTGATTG
CGGTTGGACTTGTGTCTGGAACAGTCTTGATGTATGATGTGAGACAAACA
TCTACAGCCCTGTACAAATCAACCCTGTCTCGGAACCAAGGATCGCGAGC
TGTTCACTCTTTGGCGGAGATTCAACTTGTTGACTCGCGCACTTCCTCCA
CTGTCTTAGCAGCTGCTTCACCGCTGGGAGTTTTTGGAATCTCGTTTGAT
GGCTACATGGACACACCCAACGTATGTGCAGTCCGCGGTGGCGTGCCAGA
TGACTGGGCTTCAACCAGTTTTACGGTCAGTGGAAATATGATTGCCGTTG
CTGCAAAGAGGCCCAGCATGATGGGTTACGCGTCTCAGGAATTGGGTTGT
TCCTTATCCATGCACAGCGGCCTAATTCGGGAGGGGCCAGACCTTAGGTT
CGGCCCTTCCCTCGGGGAGCCTGTGTATACCGCTTCGCAAAGCGTGCCGT
TTGTGTATTGTGGTATCGTCGACGGAAACGAAAATCATTCGGATACAATC
CTAGCCTATCCAAACAAGAACGCCAAGGACAAACTGAGTGTGTGGGCTTT
CAAGCGTGATTCGTACGAAGGGAGTCCGAGCTGGAAGCAGCAAGAAGTTG
TTTCAGAATTGCAAACCCAATATCAGAGCAATTCTGACGTAAGAGCAGCT
GCGGGGCTTCGACTACCGCGTACTGCAAGGATAAATGGAGTTCCTGATGG
AAGTCGAGGAATTTTCGTTACTGTAGGCGGTGATATCATCCGAGTATTTG
CGGCAGGGAAGTACTGA