Gvermi5685.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5685.t1
Unique NameGvermi5685.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:996000..996620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog489825.LYNGBM3L_56070
Preferred namecpeZ
PFAMsHEAT_2
Max annot lvl1117|Cyanobacteria
KEGG koko:K05386
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue1.23e-19
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G510@1117|Cyanobacteria,1HAP7@1150|Oscillatoriales
DescriptionPBS lyase HEAT-like repeat
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5685Gvermi5685Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 996000..996620 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5685.t1.start1Gvermi5685.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 996000..996002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5685.t1.CDS1Gvermi5685.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 996000..996620 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5685.t1.exon1Gvermi5685.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 996000..996620 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5685.t1.stop1Gvermi5685.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 996618..996620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5685.t1Gvermi5685.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 996000..996620 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5685.t1 ID=Gvermi5685.t1|Name=Gvermi5685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=207bp
LAQLATQPIIARLLSLLGDADVAYRRTAVQALAMSGEPALPPIVAELNST
QNATVRASCAKALAGLALYFPELRERFPAPALDALHAALRSADAVTKLAT
VGCLATLGSDHKLKHGVARGNERALDILLSLCNAQADMAVAATAVGALAQ
IAQNGGAEQRRTIEAHLHTLTASAAADEASGFNYIQEMASSHLEQLQSAS
AGTNAQ*
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spliced messenger RNA

>Gvermi5685.t1 ID=Gvermi5685.t1|Name=Gvermi5685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_776:996000..996620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGCAGCTCGCCACGCAGCCCATCATCGCGCGCCTGCTGTCGCTGCT
GGGCGACGCCGACGTGGCGTACCGCCGCACCGCCGTGCAGGCGCTGGCCA
TGAGCGGCGAGCCCGCGCTGCCGCCCATCGTGGCCGAGCTCAACTCGACG
CAGAACGCCACGGTGCGCGCGTCGTGCGCAAAGGCGCTCGCCGGCCTAGC
GCTGTACTTTCCCGAGCTgcgcgagcgcttccccgcgcccgcgctcgatg
cgctgcacgcggcgctgcgcagcgccgacgcgGTCACCAAGCTGGCCACG
GTCGGCTGCTTGGCCACGCTCGGCAGCGACCACAAGCTCAAGCACGGCGT
GGCGCGCGGAAACGAGCGCGCGCTTGACATTTTGCTGTCGCTGTGCAACG
CGCAGGCGGACATGGCCGTGGCGGCCACGGCGGTGGGCGCGCTCGCGCAA
ATCGCGCAGAACGGCGGCGCCGAGCAGAGGCGCACCATCGAGGCGCACCT
GCACACGCTCACCGCCAGCGCCGCCGCCGACGAGGCGTCCGGCTTCAACT
ACATCCAAGAAATGGCGAGCTCGCACCTGGAGCAGCTGCAGAGCGCGTCG
GCCGGCACCAACGCACAGTAA
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protein sequence of Gvermi5685.t1

>Gvermi5685.t1 ID=Gvermi5685.t1|Name=Gvermi5685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
LAQLATQPIIARLLSLLGDADVAYRRTAVQALAMSGEPALPPIVAELNST
QNATVRASCAKALAGLALYFPELRERFPAPALDALHAALRSADAVTKLAT
VGCLATLGSDHKLKHGVARGNERALDILLSLCNAQADMAVAATAVGALAQ
IAQNGGAEQRRTIEAHLHTLTASAAADEASGFNYIQEMASSHLEQLQSAS
AGTNAQ*
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mRNA from alignment at ScGOVlb_776:996000..996620+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5685.t1 ID=Gvermi5685.t1|Name=Gvermi5685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_776:996000..996620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCGCAGCTCGCCACGCAGCCCATCATCGCGCGCCTGCTGTCGCTGCT
GGGCGACGCCGACGTGGCGTACCGCCGCACCGCCGTGCAGGCGCTGGCCA
TGAGCGGCGAGCCCGCGCTGCCGCCCATCGTGGCCGAGCTCAACTCGACG
CAGAACGCCACGGTGCGCGCGTCGTGCGCAAAGGCGCTCGCCGGCCTAGC
GCTGTACTTTCCCGAGCTgcgcgagcgcttccccgcgcccgcgctcgatg
cgctgcacgcggcgctgcgcagcgccgacgcgGTCACCAAGCTGGCCACG
GTCGGCTGCTTGGCCACGCTCGGCAGCGACCACAAGCTCAAGCACGGCGT
GGCGCGCGGAAACGAGCGCGCGCTTGACATTTTGCTGTCGCTGTGCAACG
CGCAGGCGGACATGGCCGTGGCGGCCACGGCGGTGGGCGCGCTCGCGCAA
ATCGCGCAGAACGGCGGCGCCGAGCAGAGGCGCACCATCGAGGCGCACCT
GCACACGCTCACCGCCAGCGCCGCCGCCGACGAGGCGTCCGGCTTCAACT
ACATCCAAGAAATGGCGAGCTCGCACCTGGAGCAGCTGCAGAGCGCGTCG
GCCGGCACCAACGCACAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:996000..996620+

>Gvermi5685.t1 ID=Gvermi5685.t1|Name=Gvermi5685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=621bp|location=Sequence derived from alignment at ScGOVlb_776:996000..996620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCGCAGCTCGCCACGCAGCCCATCATCGCGCGCCTGCTGTCGCTGCT
GGGCGACGCCGACGTGGCGTACCGCCGCACCGCCGTGCAGGCGCTGGCCA
TGAGCGGCGAGCCCGCGCTGCCGCCCATCGTGGCCGAGCTCAACTCGACG
CAGAACGCCACGGTGCGCGCGTCGTGCGCAAAGGCGCTCGCCGGCCTAGC
GCTGTACTTTCCCGAGCTgcgcgagcgcttccccgcgcccgcgctcgatg
cgctgcacgcggcgctgcgcagcgccgacgcgGTCACCAAGCTGGCCACG
GTCGGCTGCTTGGCCACGCTCGGCAGCGACCACAAGCTCAAGCACGGCGT
GGCGCGCGGAAACGAGCGCGCGCTTGACATTTTGCTGTCGCTGTGCAACG
CGCAGGCGGACATGGCCGTGGCGGCCACGGCGGTGGGCGCGCTCGCGCAA
ATCGCGCAGAACGGCGGCGCCGAGCAGAGGCGCACCATCGAGGCGCACCT
GCACACGCTCACCGCCAGCGCCGCCGCCGACGAGGCGTCCGGCTTCAACT
ACATCCAAGAAATGGCGAGCTCGCACCTGGAGCAGCTGCAGAGCGCGTCG
GCCGGCACCAACGCACAGTAA
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