Gvermi5649.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5649.t1
Unique NameGvermi5649.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:856278..856854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4924.XP_001386954.2
Preferred namePCM1
PFAMsPGM_PMM_I,PGM_PMM_IV
Max annot lvl4751|Fungi
KEGG rclassRC00408
KEGG koko:K01836
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004610,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009225,GO:0009226,GO:0009272,GO:0009987,GO:0010383,GO:0016051,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019438,GO:0033692,GO:0034221,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0051278,GO:0055086,GO:0070589,GO:0070592,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue2.23e-27
EggNOG OGsCOG1109@1|root,KOG2537@2759|Eukaryota,38CHB@33154|Opisthokonta,3NV1D@4751|Fungi,3QM28@4890|Ascomycota,3RSJW@4891|Saccharomycetes,47B05@766764|Debaryomycetaceae
EC5.4.2.3
DescriptionCatalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5649Gvermi5649Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 855220..856854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1Gvermi5649.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 856278..856854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1.stop1Gvermi5649.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 856278..856280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1.CDS1Gvermi5649.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 856278..856334 -
Gvermi5649.t1.CDS2Gvermi5649.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 856393..856854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1.exon1Gvermi5649.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 856278..856334 -
Gvermi5649.t1.exon2Gvermi5649.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 856393..856854 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1.intron1Gvermi5649.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 856335..856392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5649.t1.start1Gvermi5649.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 856852..856854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5649.t1 ID=Gvermi5649.t1|Name=Gvermi5649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=173bp
MKSPNPNLELTVLSDLDSLLGHRHHPSYLSYGTAGFRGPATNLYEAVLRC
GVLAACRSHVVGGKAVGVMVTASHNPPADNGLKLVEPDGSMLHAEWEQLA
TEFVNASHHPSRTLQKLVSVGDVAIARKATVVVGRDSRDSSPTLVDLVVQ
GVEACALATAVIHVILFTTTIT*
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spliced messenger RNA

>Gvermi5649.t1 ID=Gvermi5649.t1|Name=Gvermi5649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_776:856278..856854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCCCCGAATCCGAACCTCGAGCTCACGGTTTTGTCTGACCTTGA
CAGCCTCCTTGGCCACCGTCATCATCCATCATACCTCAGTTATGGCACTG
CTGGCTTTCGTGGTCCAGCCACCAATCTGTATGAAGCTGTGCTGCGATGT
GGTGTTCTGGCAGCATGTAGATCGCACGTTGTTGGAGGAAAGGCTGTGGG
GGTGATGGTGACAGCCTCACACAATCCACCCGCTGACAACGGGCTGAAGC
TCGTTGAGCCCGACGGCTCAATGCTACATGCCGAATGGGAGCAATTAGCT
ACCGAATTCGTCAATGCATCTCATCACCCATCGCGCACGTTGCAGAAGCT
GGTTTCAGTCGGAGATGTTGCCATTGCTAGAAAGGCAACCGTCGTCGTGG
GTCGCGATTCTCGCGATAGCTCTCCCACACTTGTCGACCTCGTCGTGCAA
GGGGTCGAGGCCTGCGCGCTCGCCACCGCGGTGATCCATGTAATATTATT
CACTACTACGATAACATGA
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protein sequence of Gvermi5649.t1

>Gvermi5649.t1 ID=Gvermi5649.t1|Name=Gvermi5649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MKSPNPNLELTVLSDLDSLLGHRHHPSYLSYGTAGFRGPATNLYEAVLRC
GVLAACRSHVVGGKAVGVMVTASHNPPADNGLKLVEPDGSMLHAEWEQLA
TEFVNASHHPSRTLQKLVSVGDVAIARKATVVVGRDSRDSSPTLVDLVVQ
GVEACALATAVIHVILFTTTIT*
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mRNA from alignment at ScGOVlb_776:856278..856854-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5649.t1 ID=Gvermi5649.t1|Name=Gvermi5649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=577bp|location=Sequence derived from alignment at ScGOVlb_776:856278..856854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCCCCGAATCCGAACCTCGAGCTCACGGTTTTGTCTGACCTTGA
CAGCCTCCTTGGCCACCGTCATCATCCATCATACCTCAGTTATGGCACTG
CTGGCTTTCGTGGTCCAGCCACCAATCTGTATGAAGCTGTGCTGCGATGT
GGTGTTCTGGCAGCATGTAGATCGCACGTTGTTGGAGGAAAGGCTGTGGG
GGTGATGGTGACAGCCTCACACAATCCACCCGCTGACAACGGGCTGAAGC
TCGTTGAGCCCGACGGCTCAATGCTACATGCCGAATGGGAGCAATTAGCT
ACCGAATTCGTCAATGCATCTCATCACCCATCGCGCACGTTGCAGAAGCT
GGTTTCAGTCGGAGATGTTGCCATTGCTAGAAAGGCAACCGTCGTCGTGG
GTCGCGATTCTCGCGATAGCTCTCCCACACTTGTCGACCTCGTCGTGCAA
GGGGTCGAGGCCGTTGGTGGTAGAGTAGTGCGCGTAGGTCTTGTGACAAC
TCCTCAACTACACTTTTCAGTGCGCGCTCGCCACCGCGGTGATCCATGTA
ATATTATTCACTACTACGATAACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:856278..856854-

>Gvermi5649.t1 ID=Gvermi5649.t1|Name=Gvermi5649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=519bp|location=Sequence derived from alignment at ScGOVlb_776:856278..856854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCCCCGAATCCGAACCTCGAGCTCACGGTTTTGTCTGACCTTGA
CAGCCTCCTTGGCCACCGTCATCATCCATCATACCTCAGTTATGGCACTG
CTGGCTTTCGTGGTCCAGCCACCAATCTGTATGAAGCTGTGCTGCGATGT
GGTGTTCTGGCAGCATGTAGATCGCACGTTGTTGGAGGAAAGGCTGTGGG
GGTGATGGTGACAGCCTCACACAATCCACCCGCTGACAACGGGCTGAAGC
TCGTTGAGCCCGACGGCTCAATGCTACATGCCGAATGGGAGCAATTAGCT
ACCGAATTCGTCAATGCATCTCATCACCCATCGCGCACGTTGCAGAAGCT
GGTTTCAGTCGGAGATGTTGCCATTGCTAGAAAGGCAACCGTCGTCGTGG
GTCGCGATTCTCGCGATAGCTCTCCCACACTTGTCGACCTCGTCGTGCAA
GGGGTCGAGGCCTGCGCGCTCGCCACCGCGGTGATCCATGTAATATTATT
CACTACTACGATAACATGA
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