Gvermi5575.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5575.t1
Unique NameGvermi5575.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:619256..620485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5575Gvermi5575Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 619256..620485 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5575.t1.start1Gvermi5575.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 619256..619258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5575.t1.CDS1Gvermi5575.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 619256..620485 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5575.t1.exon1Gvermi5575.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 619256..620485 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5575.t1.stop1Gvermi5575.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 620483..620485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5575.t1Gvermi5575.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 619256..620485 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5575.t1 ID=Gvermi5575.t1|Name=Gvermi5575.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=410bp
MIRSSFILFLFLCVSPALGSPMNCGPPLSKLLKACGQHDKANPDFCCEAL
REFNGKQCWCQPSAMFAASQLSTNPYGFSARVKYCKIQKPFRPSIPSRES
PGLKSTCPKFVSEATEYHSMGSCSKPNYWRTQRKKTLNKLDALFLKNTKP
QTVSAFKKFAATLFSDNVAFGSIGLLMLHGKKKTVDYLVSRQEAAGSLVP
WSSKTPGGSRQGLVWARSNLVSYEKTYYKGDSFYARFTFVTFAPCSAKIK
ALYIAENSLFSAIGSQFYYPDSPDAYNQFNLPASKICDGISKACGTKSPY
KSKSECVDFVSKLKKNGKAMCLNYKNARLSTRAAVGNTVACRVTSSLMAV
SNPEKYCPLLGKVPGGMCTTDMCPQGDYGNLFAIKNPRYIGSGGFSCNSV
TGDCVELWP*
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spliced messenger RNA

>Gvermi5575.t1 ID=Gvermi5575.t1|Name=Gvermi5575.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at ScGOVlb_776:619256..620485+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGCTCCTCATTTATCTTGTTTCTTTTTCTCTGTGTCTCTCCAGC
CCTCGGCTCTCCCATGAACTGTGGTCCACCGCTGTCAAAGCTTCTCAAAG
CATGTGGGCAACACGACAAGGCAAACCCTGACTTCTGTTGCGAGGCTCTG
CGGGAATTCAACGGCAAACAATGCTGGTGTCAGCCATCCGCCATGTTCGC
TGCTTCACAGCTTTCGACCAATCCGTACGGCTTTTCAGCTCGTGTCAAAT
ATTGCAAGATTCAGAAGCCCTTCCGCCCGTCTATACCATCGAGAGAATCG
CCTGGACTGAAGTCGACATGTCCTAAGTTTGTCTCGGAGGCGACTGAATA
TCATTCAATGGGTTCATGTTCAAAGCCTAATTATTGGAGGACGCAGAGAA
AGAAAACACTCAACAAACTTGATGCCCTCTTTCTGAAGAACACCAAGCCA
CAGACAGTGTCTGCTTTCAAGAAGTTCGCTGCCACCCTTTTTTCGGACAA
TGTGGCTTTCGGAAGTATCGGTCTGCTCATGCTTCACGGAAAGAAAAAGA
CGGTTGATTATCTCGTGTCACGACAAGAAGCTGCTGGGTCACTTGTGCCA
TGGAGCTCAAAGACTCCTGGTGGCAGTCGTCAAGGCTTAGTTTGGGCTCG
ATCCAACTTGGTAAGCTACGAAAAGACTTATTACAAGGGAGACTCATTCT
ATGCGCGTTTCACTTTCGTAACGTTTGCCCCATGCTCAGCCAAAATTAAG
GCACTCTATATAGCCGAAAACTCTTTGTTTAGCGCCATCGGGTCACAGTT
CTATTATCCAGACTCTCCCGATGCGTACAATCAATTTAATCTTCCAGCTT
CCAAGATCTGTGATGGAATCAGTAAGGCTTGCGGAACCAAGTCACCGTAC
AAGTCAAAATCTGAATGCGTGGATTTCGTGTCGAAACTTAAGAAGAACGG
CAAGGCTATGTGTCTCAATTACAAGAATGCTCGTCTCTCTACTCGAGCCG
CTGTCGGAAACACTGTCGCATGTCGCGTTACATCCAGTTTGATGGCCGTC
AGCAATCCGGAAAAATATTGTCCATTACTTGGAAAGGTACCTGGAGGGAT
GTGTACCACGGACATGTGTCCACAGGGAGACTACGGTAATCTTTTCGCTA
TTAAGAATCCTCGATACATTGGGTCTGGCGGCTTCTCTTGCAACTCAGTC
ACTGGTGATTGTGTCGAGTTGTGGCCCTAA
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protein sequence of Gvermi5575.t1

>Gvermi5575.t1 ID=Gvermi5575.t1|Name=Gvermi5575.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=410bp
MIRSSFILFLFLCVSPALGSPMNCGPPLSKLLKACGQHDKANPDFCCEAL
REFNGKQCWCQPSAMFAASQLSTNPYGFSARVKYCKIQKPFRPSIPSRES
PGLKSTCPKFVSEATEYHSMGSCSKPNYWRTQRKKTLNKLDALFLKNTKP
QTVSAFKKFAATLFSDNVAFGSIGLLMLHGKKKTVDYLVSRQEAAGSLVP
WSSKTPGGSRQGLVWARSNLVSYEKTYYKGDSFYARFTFVTFAPCSAKIK
ALYIAENSLFSAIGSQFYYPDSPDAYNQFNLPASKICDGISKACGTKSPY
KSKSECVDFVSKLKKNGKAMCLNYKNARLSTRAAVGNTVACRVTSSLMAV
SNPEKYCPLLGKVPGGMCTTDMCPQGDYGNLFAIKNPRYIGSGGFSCNSV
TGDCVELWP*
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mRNA from alignment at ScGOVlb_776:619256..620485+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5575.t1 ID=Gvermi5575.t1|Name=Gvermi5575.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at ScGOVlb_776:619256..620485+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATACGCTCCTCATTTATCTTGTTTCTTTTTCTCTGTGTCTCTCCAGC
CCTCGGCTCTCCCATGAACTGTGGTCCACCGCTGTCAAAGCTTCTCAAAG
CATGTGGGCAACACGACAAGGCAAACCCTGACTTCTGTTGCGAGGCTCTG
CGGGAATTCAACGGCAAACAATGCTGGTGTCAGCCATCCGCCATGTTCGC
TGCTTCACAGCTTTCGACCAATCCGTACGGCTTTTCAGCTCGTGTCAAAT
ATTGCAAGATTCAGAAGCCCTTCCGCCCGTCTATACCATCGAGAGAATCG
CCTGGACTGAAGTCGACATGTCCTAAGTTTGTCTCGGAGGCGACTGAATA
TCATTCAATGGGTTCATGTTCAAAGCCTAATTATTGGAGGACGCAGAGAA
AGAAAACACTCAACAAACTTGATGCCCTCTTTCTGAAGAACACCAAGCCA
CAGACAGTGTCTGCTTTCAAGAAGTTCGCTGCCACCCTTTTTTCGGACAA
TGTGGCTTTCGGAAGTATCGGTCTGCTCATGCTTCACGGAAAGAAAAAGA
CGGTTGATTATCTCGTGTCACGACAAGAAGCTGCTGGGTCACTTGTGCCA
TGGAGCTCAAAGACTCCTGGTGGCAGTCGTCAAGGCTTAGTTTGGGCTCG
ATCCAACTTGGTAAGCTACGAAAAGACTTATTACAAGGGAGACTCATTCT
ATGCGCGTTTCACTTTCGTAACGTTTGCCCCATGCTCAGCCAAAATTAAG
GCACTCTATATAGCCGAAAACTCTTTGTTTAGCGCCATCGGGTCACAGTT
CTATTATCCAGACTCTCCCGATGCGTACAATCAATTTAATCTTCCAGCTT
CCAAGATCTGTGATGGAATCAGTAAGGCTTGCGGAACCAAGTCACCGTAC
AAGTCAAAATCTGAATGCGTGGATTTCGTGTCGAAACTTAAGAAGAACGG
CAAGGCTATGTGTCTCAATTACAAGAATGCTCGTCTCTCTACTCGAGCCG
CTGTCGGAAACACTGTCGCATGTCGCGTTACATCCAGTTTGATGGCCGTC
AGCAATCCGGAAAAATATTGTCCATTACTTGGAAAGGTACCTGGAGGGAT
GTGTACCACGGACATGTGTCCACAGGGAGACTACGGTAATCTTTTCGCTA
TTAAGAATCCTCGATACATTGGGTCTGGCGGCTTCTCTTGCAACTCAGTC
ACTGGTGATTGTGTCGAGTTGTGGCCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:619256..620485+

>Gvermi5575.t1 ID=Gvermi5575.t1|Name=Gvermi5575.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1230bp|location=Sequence derived from alignment at ScGOVlb_776:619256..620485+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATACGCTCCTCATTTATCTTGTTTCTTTTTCTCTGTGTCTCTCCAGC
CCTCGGCTCTCCCATGAACTGTGGTCCACCGCTGTCAAAGCTTCTCAAAG
CATGTGGGCAACACGACAAGGCAAACCCTGACTTCTGTTGCGAGGCTCTG
CGGGAATTCAACGGCAAACAATGCTGGTGTCAGCCATCCGCCATGTTCGC
TGCTTCACAGCTTTCGACCAATCCGTACGGCTTTTCAGCTCGTGTCAAAT
ATTGCAAGATTCAGAAGCCCTTCCGCCCGTCTATACCATCGAGAGAATCG
CCTGGACTGAAGTCGACATGTCCTAAGTTTGTCTCGGAGGCGACTGAATA
TCATTCAATGGGTTCATGTTCAAAGCCTAATTATTGGAGGACGCAGAGAA
AGAAAACACTCAACAAACTTGATGCCCTCTTTCTGAAGAACACCAAGCCA
CAGACAGTGTCTGCTTTCAAGAAGTTCGCTGCCACCCTTTTTTCGGACAA
TGTGGCTTTCGGAAGTATCGGTCTGCTCATGCTTCACGGAAAGAAAAAGA
CGGTTGATTATCTCGTGTCACGACAAGAAGCTGCTGGGTCACTTGTGCCA
TGGAGCTCAAAGACTCCTGGTGGCAGTCGTCAAGGCTTAGTTTGGGCTCG
ATCCAACTTGGTAAGCTACGAAAAGACTTATTACAAGGGAGACTCATTCT
ATGCGCGTTTCACTTTCGTAACGTTTGCCCCATGCTCAGCCAAAATTAAG
GCACTCTATATAGCCGAAAACTCTTTGTTTAGCGCCATCGGGTCACAGTT
CTATTATCCAGACTCTCCCGATGCGTACAATCAATTTAATCTTCCAGCTT
CCAAGATCTGTGATGGAATCAGTAAGGCTTGCGGAACCAAGTCACCGTAC
AAGTCAAAATCTGAATGCGTGGATTTCGTGTCGAAACTTAAGAAGAACGG
CAAGGCTATGTGTCTCAATTACAAGAATGCTCGTCTCTCTACTCGAGCCG
CTGTCGGAAACACTGTCGCATGTCGCGTTACATCCAGTTTGATGGCCGTC
AGCAATCCGGAAAAATATTGTCCATTACTTGGAAAGGTACCTGGAGGGAT
GTGTACCACGGACATGTGTCCACAGGGAGACTACGGTAATCTTTTCGCTA
TTAAGAATCCTCGATACATTGGGTCTGGCGGCTTCTCTTGCAACTCAGTC
ACTGGTGATTGTGTCGAGTTGTGGCCCTAA
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