Gvermi5505.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5505.t1
Unique Name	Gvermi5505.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_37	contig	ScGOVlb_37:9723..10631 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	697282.Mettu_1301
PFAMs	GDP_Man_Dehyd
Max annot lvl	135618\|Methylococcales
KEGG rclass	RC00508
KEGG ko	ko:K08678
KEGG Reaction	R01384
KEGG Pathway	ko00520,ko01100,map00520,map01100
KEGG Module	M00361
Evalue	4.52e-74
EggNOG OGs	COG0451@1\|root,COG0451@2\|Bacteria,1PEPS@1224\|Proteobacteria,1RXAV@1236\|Gammaproteobacteria,1XGH8@135618\|Methylococcales
EC	4.1.1.35
Description	Male sterility protein
COG category	M
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5505	Gvermi5505	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_37 9723..10631 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5505.t1.start1	Gvermi5505.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_37 9723..9725 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5505.t1.CDS1	Gvermi5505.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_37 9723..10631 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5505.t1.exon1	Gvermi5505.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_37 9723..10631 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5505.t1.stop1	Gvermi5505.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_37 10629..10631 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5505.t1	Gvermi5505.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_37 9723..10631 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_37:9723..10631+
coding sequence from alignment at ScGOVlb_37:9723..10631+

mRNA sequence

>Gvermi5505.t1 ID=Gvermi5505.t1|Name=Gvermi5505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=303bp
MKIVITGGAGFIGSNLCEYVLGNQAGAEVVVVDDLSAGRRELLPAGVAFH
ELDIRDTASLTKVCAGADVIVHLAAQPRVQYSIEDPVSTHDVNVNGTLSV
LEAARAAGVGRVVFAASSAAYGDQETMPLSLDATSEPKSPYALHKLMGEQ
LLALWHELYGLQTVSLRFFNVYGPHLDPEGPYALVIGRFLKLAQAGAPLT
ITGDGEQTRDFVHVHDVAAAILAAATNPNVGHGEVLNIGAGEQTSVNDLA
AMIGGDVEYIEPRIEPRYAQADISKTTELLDWQPAVALGDGITELKKEFG
LK*

spliced messenger RNA

>Gvermi5505.t1 ID=Gvermi5505.t1|Name=Gvermi5505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=909bp|location=Sequence derived from alignment at ScGOVlb_37:9723..10631+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATTGTAATCACTGGTGGAGCTGGATTTATTGGGAGTAATTTGTG
TGAGTATGTGCTGGGGAATCAGGCCGGCGCTGAGGTCGTCGTCGTAGACG
ACCTCAGCGCCGGCCGCCGCGAACTGCTCCCAGCTGGCGTGGCATTTCAC
GAACTAGATATTCGAGATACCGCATCACTCACCAAAGTCTGCGCTGGCGC
TGATGTAATCGTTCATCTTGCAGCACAACCGCGCGTACAATACTCCATTG
AAGATCCTGTATCGACTCATGACGTAAACGTGAATGGGACGTTGAGTGTG
CTTGAAGCCGCGCGAGCCGCCGGTGTGGGTAGGGTGGTGTTTGCTGCTTC
AAGTGCAGCGTATGGTGATCAAGAAACTATGCCACTCTCGCTTGATGCAA
CGTCTGAACCCAAAAGCCCATATGCATTACATAAACTGATGGGGGAGCAG
CTGCTGGCACTTTGGCATGAGTTGTACGGTCTCCAAACTGTGTCGCTGCG
ATTCTTTAATGTGTATGGTCCACACCTCGATCCGGAAGGGCCGTATGCGT
TGGTAATCGGACGGTTCCTAAAATTAGCTCAAGCAGGTGCACCGCTTACT
ATCACGGGTGATGGTGAGCAGACACGCGACTTTGTCCATGTGCATGATGT
GGCTGCAGCCATTCTGGCTGCAGCCACCAACCCCAACGTCGGTCACGGTG
AAGTGCTCAATATTGGTGCTGGAGAGCAAACAAGCGTTAACGATCTTGCG
GCCATGATTGGTGGGGATGTTGAGTATATTGAACCACGCATAGAACCTAG
ATATGCACAAGCAGACATCTCAAAAACTACCGAACTGCTTGACTGGCAGC
CAGCAGTTGCTTTGGGGGACGGAATAACTGAACTGAAAAAAGAGTTTGGG
TTGAAGTAA

protein sequence of Gvermi5505.t1

>Gvermi5505.t1 ID=Gvermi5505.t1|Name=Gvermi5505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=303bp
MKIVITGGAGFIGSNLCEYVLGNQAGAEVVVVDDLSAGRRELLPAGVAFH
ELDIRDTASLTKVCAGADVIVHLAAQPRVQYSIEDPVSTHDVNVNGTLSV
LEAARAAGVGRVVFAASSAAYGDQETMPLSLDATSEPKSPYALHKLMGEQ
LLALWHELYGLQTVSLRFFNVYGPHLDPEGPYALVIGRFLKLAQAGAPLT
ITGDGEQTRDFVHVHDVAAAILAAATNPNVGHGEVLNIGAGEQTSVNDLA
AMIGGDVEYIEPRIEPRYAQADISKTTELLDWQPAVALGDGITELKKEFG
LK*

mRNA from alignment at ScGOVlb_37:9723..10631+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5505.t1 ID=Gvermi5505.t1|Name=Gvermi5505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=909bp|location=Sequence derived from alignment at ScGOVlb_37:9723..10631+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAATTGTAATCACTGGTGGAGCTGGATTTATTGGGAGTAATTTGTG
TGAGTATGTGCTGGGGAATCAGGCCGGCGCTGAGGTCGTCGTCGTAGACG
ACCTCAGCGCCGGCCGCCGCGAACTGCTCCCAGCTGGCGTGGCATTTCAC
GAACTAGATATTCGAGATACCGCATCACTCACCAAAGTCTGCGCTGGCGC
TGATGTAATCGTTCATCTTGCAGCACAACCGCGCGTACAATACTCCATTG
AAGATCCTGTATCGACTCATGACGTAAACGTGAATGGGACGTTGAGTGTG
CTTGAAGCCGCGCGAGCCGCCGGTGTGGGTAGGGTGGTGTTTGCTGCTTC
AAGTGCAGCGTATGGTGATCAAGAAACTATGCCACTCTCGCTTGATGCAA
CGTCTGAACCCAAAAGCCCATATGCATTACATAAACTGATGGGGGAGCAG
CTGCTGGCACTTTGGCATGAGTTGTACGGTCTCCAAACTGTGTCGCTGCG
ATTCTTTAATGTGTATGGTCCACACCTCGATCCGGAAGGGCCGTATGCGT
TGGTAATCGGACGGTTCCTAAAATTAGCTCAAGCAGGTGCACCGCTTACT
ATCACGGGTGATGGTGAGCAGACACGCGACTTTGTCCATGTGCATGATGT
GGCTGCAGCCATTCTGGCTGCAGCCACCAACCCCAACGTCGGTCACGGTG
AAGTGCTCAATATTGGTGCTGGAGAGCAAACAAGCGTTAACGATCTTGCG
GCCATGATTGGTGGGGATGTTGAGTATATTGAACCACGCATAGAACCTAG
ATATGCACAAGCAGACATCTCAAAAACTACCGAACTGCTTGACTGGCAGC
CAGCAGTTGCTTTGGGGGACGGAATAACTGAACTGAAAAAAGAGTTTGGG
TTGAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_37:9723..10631+

>Gvermi5505.t1 ID=Gvermi5505.t1|Name=Gvermi5505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=909bp|location=Sequence derived from alignment at ScGOVlb_37:9723..10631+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAATTGTAATCACTGGTGGAGCTGGATTTATTGGGAGTAATTTGTG
TGAGTATGTGCTGGGGAATCAGGCCGGCGCTGAGGTCGTCGTCGTAGACG
ACCTCAGCGCCGGCCGCCGCGAACTGCTCCCAGCTGGCGTGGCATTTCAC
GAACTAGATATTCGAGATACCGCATCACTCACCAAAGTCTGCGCTGGCGC
TGATGTAATCGTTCATCTTGCAGCACAACCGCGCGTACAATACTCCATTG
AAGATCCTGTATCGACTCATGACGTAAACGTGAATGGGACGTTGAGTGTG
CTTGAAGCCGCGCGAGCCGCCGGTGTGGGTAGGGTGGTGTTTGCTGCTTC
AAGTGCAGCGTATGGTGATCAAGAAACTATGCCACTCTCGCTTGATGCAA
CGTCTGAACCCAAAAGCCCATATGCATTACATAAACTGATGGGGGAGCAG
CTGCTGGCACTTTGGCATGAGTTGTACGGTCTCCAAACTGTGTCGCTGCG
ATTCTTTAATGTGTATGGTCCACACCTCGATCCGGAAGGGCCGTATGCGT
TGGTAATCGGACGGTTCCTAAAATTAGCTCAAGCAGGTGCACCGCTTACT
ATCACGGGTGATGGTGAGCAGACACGCGACTTTGTCCATGTGCATGATGT
GGCTGCAGCCATTCTGGCTGCAGCCACCAACCCCAACGTCGGTCACGGTG
AAGTGCTCAATATTGGTGCTGGAGAGCAAACAAGCGTTAACGATCTTGCG
GCCATGATTGGTGGGGATGTTGAGTATATTGAACCACGCATAGAACCTAG
ATATGCACAAGCAGACATCTCAAAAACTACCGAACTGCTTGACTGGCAGC
CAGCAGTTGCTTTGGGGGACGGAATAACTGAACTGAAAAAAGAGTTTGGG
TTGAAGTAA