Gvermi5472.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5472.t1
Unique NameGvermi5472.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2172109..2172666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704880.1
Preferred nameHGPRT
PFAMsPribosyltran
Max annot lvl2759|Eukaryota
KEGG rclassRC00063,RC00122
KEGG koko:K00760
KEGG ReactionR00190,R01132,R01229,R02142,R08237,R08238,R08245
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
Evalue1.15e-49
EggNOG OGsCOG0634@1|root,KOG3367@2759|Eukaryota
EC2.4.2.8
Descriptionguanine phosphoribosyltransferase activity
COG categoryF
BiGG ReactioniRC1080.CRv4_Au5_s17_g7207_t1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5472Gvermi5472Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 2172109..2172666 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5472.t1.start1Gvermi5472.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 2172109..2172111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5472.t1.CDS1Gvermi5472.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 2172109..2172666 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5472.t1.exon1Gvermi5472.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 2172109..2172666 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5472.t1.stop1Gvermi5472.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 2172664..2172666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5472.t1Gvermi5472.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 2172109..2172666 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5472.t1 ID=Gvermi5472.t1|Name=Gvermi5472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=186bp
MESGGPVPPEWVGSISEVLIGSADIAKRVSQLGKTLSSRYEGLNPLLMVV
LKGSYMFASDLSRSMSIPHELEFIRASSYSGTESSGNVCINGMKDTALKG
RHVIIIEDIVDTGLTLCRLYAHFEGAGAATIRTCSFLKKETLRRKADIPE
IDFVAFHIPDKFVIGYGLDYEQQYRHLPFVGVYKQ*
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spliced messenger RNA

>Gvermi5472.t1 ID=Gvermi5472.t1|Name=Gvermi5472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_24228:2172109..2172666+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGCGGAGGACCCGTGCCGCCGGAGTGGGTGGGTTCCATCTCGGA
GGTTTTGATCGGATCAGCAGACATTGCAAAACGAGTCTCCCAACTCGGCA
AAACACTATCCTCCAGGTATGAAGGATTGAATCCTCTCTTGATGGTGGTT
CTTAAAGGTTCTTACATGTTTGCCTCAGATTTATCTCGTTCTATGAGCAT
ACCTCATGAACTAGAATTTATTCGTGCAAGCAGCTACAGCGGTACAGAGA
GCAGCGGGAACGTTTGCATAAACGGCATGAAAGACACAGCACTCAAAGGC
AGACACGTGATTATAATTGAAGACATTGTCGACACTGGACTTACTCTATG
TCGCCTGTACGCGCACTTTGAAGGAGCAGGTGCGGCTACGATAAGGACTT
GTTCTTTCTTGAAAAAGGAGACGTTGCGACGGAAGGCAGACATTCCAGAA
ATTGATTTCGTGGCGTTCCACATCCCGGACAAGTTTGTAATTGGATATGG
CCTGGATTACGAACAGCAATATCGCCATTTACCTTTTGTGGGCGTGTATA
AACAGTAG
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protein sequence of Gvermi5472.t1

>Gvermi5472.t1 ID=Gvermi5472.t1|Name=Gvermi5472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=186bp
MESGGPVPPEWVGSISEVLIGSADIAKRVSQLGKTLSSRYEGLNPLLMVV
LKGSYMFASDLSRSMSIPHELEFIRASSYSGTESSGNVCINGMKDTALKG
RHVIIIEDIVDTGLTLCRLYAHFEGAGAATIRTCSFLKKETLRRKADIPE
IDFVAFHIPDKFVIGYGLDYEQQYRHLPFVGVYKQ*
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mRNA from alignment at ScGOVlb_24228:2172109..2172666+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5472.t1 ID=Gvermi5472.t1|Name=Gvermi5472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_24228:2172109..2172666+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGCGGAGGACCCGTGCCGCCGGAGTGGGTGGGTTCCATCTCGGA
GGTTTTGATCGGATCAGCAGACATTGCAAAACGAGTCTCCCAACTCGGCA
AAACACTATCCTCCAGGTATGAAGGATTGAATCCTCTCTTGATGGTGGTT
CTTAAAGGTTCTTACATGTTTGCCTCAGATTTATCTCGTTCTATGAGCAT
ACCTCATGAACTAGAATTTATTCGTGCAAGCAGCTACAGCGGTACAGAGA
GCAGCGGGAACGTTTGCATAAACGGCATGAAAGACACAGCACTCAAAGGC
AGACACGTGATTATAATTGAAGACATTGTCGACACTGGACTTACTCTATG
TCGCCTGTACGCGCACTTTGAAGGAGCAGGTGCGGCTACGATAAGGACTT
GTTCTTTCTTGAAAAAGGAGACGTTGCGACGGAAGGCAGACATTCCAGAA
ATTGATTTCGTGGCGTTCCACATCCCGGACAAGTTTGTAATTGGATATGG
CCTGGATTACGAACAGCAATATCGCCATTTACCTTTTGTGGGCGTGTATA
AACAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:2172109..2172666+

>Gvermi5472.t1 ID=Gvermi5472.t1|Name=Gvermi5472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=558bp|location=Sequence derived from alignment at ScGOVlb_24228:2172109..2172666+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGCGGAGGACCCGTGCCGCCGGAGTGGGTGGGTTCCATCTCGGA
GGTTTTGATCGGATCAGCAGACATTGCAAAACGAGTCTCCCAACTCGGCA
AAACACTATCCTCCAGGTATGAAGGATTGAATCCTCTCTTGATGGTGGTT
CTTAAAGGTTCTTACATGTTTGCCTCAGATTTATCTCGTTCTATGAGCAT
ACCTCATGAACTAGAATTTATTCGTGCAAGCAGCTACAGCGGTACAGAGA
GCAGCGGGAACGTTTGCATAAACGGCATGAAAGACACAGCACTCAAAGGC
AGACACGTGATTATAATTGAAGACATTGTCGACACTGGACTTACTCTATG
TCGCCTGTACGCGCACTTTGAAGGAGCAGGTGCGGCTACGATAAGGACTT
GTTCTTTCTTGAAAAAGGAGACGTTGCGACGGAAGGCAGACATTCCAGAA
ATTGATTTCGTGGCGTTCCACATCCCGGACAAGTTTGTAATTGGATATGG
CCTGGATTACGAACAGCAATATCGCCATTTACCTTTTGTGGGCGTGTATA
AACAGTAG
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