Gvermi5427.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5427.t1
Unique NameGvermi5427.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1887451..1887846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES82183
PFAMsMutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
Max annot lvl35493|Streptophyta
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000217,GO:0000404,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032135,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
Evalue1.38e-05
EggNOG OGsCOG0249@1|root,KOG0217@2759|Eukaryota,37J1Q@33090|Viridiplantae,3GCN9@35493|Streptophyta,4JKRE@91835|fabids
DescriptionComponent of the post-replicative DNA mismatch repair system (MMR)
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5427Gvermi5427Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1887451..1887846 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5427.t1.start1Gvermi5427.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1887451..1887453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5427.t1.CDS1Gvermi5427.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1887451..1887846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5427.t1.exon1Gvermi5427.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1887451..1887846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5427.t1.stop1Gvermi5427.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1887844..1887846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5427.t1Gvermi5427.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1887451..1887846 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5427.t1 ID=Gvermi5427.t1|Name=Gvermi5427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=132bp
LADDASDASDDDATLVRSSEAPPVLIAEEKEGTFSVGGDEDLNAPPQLPP
VQQLYGQHNSTALLSPTPLPDVDPTTAPIPAAPNSCSSSTTIDVPYIGAD
IEVCWPLDDTYYPGTVSKFTSRTGMHTIRYD*
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spliced messenger RNA

>Gvermi5427.t1 ID=Gvermi5427.t1|Name=Gvermi5427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp|location=Sequence derived from alignment at ScGOVlb_24228:1887451..1887846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCCGACGATGCTAGCGATGCCTCTGATGACGATGCTACTCTTGTTCG
GTCTTCTGAGGCACCACCTGTTCTCATTGCCGAGGAAAAGGAAGGTACGT
TTTCCGTGGGTGGCGACGAAGATCTCAATGCACCGCCCCAACTACCGCCT
GTCCAGCAACTGTACGGTCAGCATAACTCTACTGCTCTCCTGTCGCCCAC
ACCGCTCCCCGATGTAGACCCTACGACTGCACCTATCCCCGCTGCACCCA
ACAGTTGCAGCAGTTCCACCACAATCGATGTGCCTTACATTGGCGCAGAC
ATCGAGGTATGCTGGCCTTTGGATGACACATACTACCCTGGCACTGTCTC
TAAGTTCACTTCCCGCACTGGAATGCACACCATTCGATACGACTAA
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protein sequence of Gvermi5427.t1

>Gvermi5427.t1 ID=Gvermi5427.t1|Name=Gvermi5427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=132bp
LADDASDASDDDATLVRSSEAPPVLIAEEKEGTFSVGGDEDLNAPPQLPP
VQQLYGQHNSTALLSPTPLPDVDPTTAPIPAAPNSCSSSTTIDVPYIGAD
IEVCWPLDDTYYPGTVSKFTSRTGMHTIRYD*
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mRNA from alignment at ScGOVlb_24228:1887451..1887846+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5427.t1 ID=Gvermi5427.t1|Name=Gvermi5427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp|location=Sequence derived from alignment at ScGOVlb_24228:1887451..1887846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCGACGATGCTAGCGATGCCTCTGATGACGATGCTACTCTTGTTCG
GTCTTCTGAGGCACCACCTGTTCTCATTGCCGAGGAAAAGGAAGGTACGT
TTTCCGTGGGTGGCGACGAAGATCTCAATGCACCGCCCCAACTACCGCCT
GTCCAGCAACTGTACGGTCAGCATAACTCTACTGCTCTCCTGTCGCCCAC
ACCGCTCCCCGATGTAGACCCTACGACTGCACCTATCCCCGCTGCACCCA
ACAGTTGCAGCAGTTCCACCACAATCGATGTGCCTTACATTGGCGCAGAC
ATCGAGGTATGCTGGCCTTTGGATGACACATACTACCCTGGCACTGTCTC
TAAGTTCACTTCCCGCACTGGAATGCACACCATTCGATACGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1887451..1887846+

>Gvermi5427.t1 ID=Gvermi5427.t1|Name=Gvermi5427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=396bp|location=Sequence derived from alignment at ScGOVlb_24228:1887451..1887846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCGACGATGCTAGCGATGCCTCTGATGACGATGCTACTCTTGTTCG
GTCTTCTGAGGCACCACCTGTTCTCATTGCCGAGGAAAAGGAAGGTACGT
TTTCCGTGGGTGGCGACGAAGATCTCAATGCACCGCCCCAACTACCGCCT
GTCCAGCAACTGTACGGTCAGCATAACTCTACTGCTCTCCTGTCGCCCAC
ACCGCTCCCCGATGTAGACCCTACGACTGCACCTATCCCCGCTGCACCCA
ACAGTTGCAGCAGTTCCACCACAATCGATGTGCCTTACATTGGCGCAGAC
ATCGAGGTATGCTGGCCTTTGGATGACACATACTACCCTGGCACTGTCTC
TAAGTTCACTTCCCGCACTGGAATGCACACCATTCGATACGACTAA
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