Gvermi5373.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5373.t1
Unique NameGvermi5373.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1472230..1473270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_02460T0
Preferred nameRPF2
PFAMsBrix
Max annot lvl4751|Fungi
KEGG koko:K14847
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0008312,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902626,GO:1990904
Evalue1.02e-67
EggNOG OGsCOG5106@1|root,KOG3031@2759|Eukaryota,39R5N@33154|Opisthokonta,3NV15@4751|Fungi
DescriptionRibosome biogenesis protein
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5373Gvermi5373Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1472230..1473270 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5373.t1.stop1Gvermi5373.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1472230..1472232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5373.t1.CDS1Gvermi5373.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1472230..1473270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5373.t1.exon1Gvermi5373.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1472230..1473270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5373.t1.start1Gvermi5373.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1473268..1473270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5373.t1Gvermi5373.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1472230..1473270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5373.t1 ID=Gvermi5373.t1|Name=Gvermi5373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=347bp
MGIKYNHSHVVSRAKSGSGRRALESRMPKVIETPKTLLALKGHATSVVGI
NLLNDLYLLKKPLCKKLQRKNDLLPFEAGGEAHLENLARLNNCSLFAVVN
HNKKRPHNIIFGRTFGFRILDMLEFGISNYTPLARFRSLKSFPGSKPMLL
FNGDDYGVTETTMTIRSILLDVFRGGDDVRGLNLAGVDRVIVFTLQGERK
VLFRQYAVELKKQKDSRLPRVVLKEAGPRFDLEVRRSRIASEALMKSALK
RPRDPAYVRKVKNVSRDEMGDKKGRIHLGRQDLSKLALARMKGLDSRRQV
DDADAREAKEIDTKNGEENMQEEETGIGTIENVEPVSKRLKVETLS*
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spliced messenger RNA

>Gvermi5373.t1 ID=Gvermi5373.t1|Name=Gvermi5373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24228:1472230..1473270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATAAAGTATAACCATAGCCATGTGGTATCGCGAGCCAAAAGTGG
ATCTGGGCGGCGCGCACTCGAATCTCGAATGCCCAAGGTTATTGAAACGC
CGAAGACCTTGTTGGCGCTGAAAGGTCATGCAACATCTGTTGTTGGTATT
AATCTGCTGAATGATCTGTATCTTTTGAAGAAACCGCTCTGCAAGAAACT
TCAACGAAAGAACGACTTGCTTCCTTTTGAGGCTGGTGGAGAAGCACATT
TAGAGAATCTCGCACGGCTCAACAACTGCTCTCTTTTTGCAGTCGTCAAT
CACAATAAGAAACGTCCTCACAACATTATTTTTGGCCGCACTTTTGGGTT
TCGCATATTGGATATGCTCGAGTTCGGTATATCCAATTATACCCCTCTTG
CACGATTCCGATCCCTGAAGAGCTTCCCAGGGTCAAAGCCAATGCTTCTC
TTTAATGGAGACGATTACGGCGTGACTGAAACTACAATGACAATTCGCTC
AATTCTTTTGGATGTATTCCGTGGCGGTGATGATGTTCGTGGATTGAATC
TGGCTGGTGTGGATCGAGTTATCGTGTTCACCTTGCAAGGAGAAAGAAAA
GTGTTGTTTCGACAGTACGCTGTGGAACTAAAAAAACAAAAGGACTCGAG
ACTCCCTAGGGTTGTTCTGAAAGAAGCAGGACCGCGTTTTGACTTGGAGG
TCAGACGTTCAAGAATCGCTTCAGAGGCATTGATGAAGAGCGCCTTGAAG
AGGCCCCGAGACCCAGCCTATGTCCGTAAAGTGAAGAATGTTTCCCGCGA
TGAGATGGGGGATAAGAAGGGCCGCATTCATCTTGGTAGGCAAGACCTGA
GCAAGCTCGCCCTCGCTCGTATGAAAGGCTTAGACAGTCGGCGACAAGTA
GATGACGCTGATGCTCGCGAGGCAAAGGAAATCGACACTAAAAACGGTGA
AGAGAATATGCAGGAAGAAGAAACTGGAATTGGTACCATTGAAAATGTTG
AGCCAGTCAGCAAGCGCTTGAAGGTCGAAACGTTATCGTAG
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protein sequence of Gvermi5373.t1

>Gvermi5373.t1 ID=Gvermi5373.t1|Name=Gvermi5373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=347bp
MGIKYNHSHVVSRAKSGSGRRALESRMPKVIETPKTLLALKGHATSVVGI
NLLNDLYLLKKPLCKKLQRKNDLLPFEAGGEAHLENLARLNNCSLFAVVN
HNKKRPHNIIFGRTFGFRILDMLEFGISNYTPLARFRSLKSFPGSKPMLL
FNGDDYGVTETTMTIRSILLDVFRGGDDVRGLNLAGVDRVIVFTLQGERK
VLFRQYAVELKKQKDSRLPRVVLKEAGPRFDLEVRRSRIASEALMKSALK
RPRDPAYVRKVKNVSRDEMGDKKGRIHLGRQDLSKLALARMKGLDSRRQV
DDADAREAKEIDTKNGEENMQEEETGIGTIENVEPVSKRLKVETLS*
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mRNA from alignment at ScGOVlb_24228:1472230..1473270-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5373.t1 ID=Gvermi5373.t1|Name=Gvermi5373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24228:1472230..1473270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTATAAAGTATAACCATAGCCATGTGGTATCGCGAGCCAAAAGTGG
ATCTGGGCGGCGCGCACTCGAATCTCGAATGCCCAAGGTTATTGAAACGC
CGAAGACCTTGTTGGCGCTGAAAGGTCATGCAACATCTGTTGTTGGTATT
AATCTGCTGAATGATCTGTATCTTTTGAAGAAACCGCTCTGCAAGAAACT
TCAACGAAAGAACGACTTGCTTCCTTTTGAGGCTGGTGGAGAAGCACATT
TAGAGAATCTCGCACGGCTCAACAACTGCTCTCTTTTTGCAGTCGTCAAT
CACAATAAGAAACGTCCTCACAACATTATTTTTGGCCGCACTTTTGGGTT
TCGCATATTGGATATGCTCGAGTTCGGTATATCCAATTATACCCCTCTTG
CACGATTCCGATCCCTGAAGAGCTTCCCAGGGTCAAAGCCAATGCTTCTC
TTTAATGGAGACGATTACGGCGTGACTGAAACTACAATGACAATTCGCTC
AATTCTTTTGGATGTATTCCGTGGCGGTGATGATGTTCGTGGATTGAATC
TGGCTGGTGTGGATCGAGTTATCGTGTTCACCTTGCAAGGAGAAAGAAAA
GTGTTGTTTCGACAGTACGCTGTGGAACTAAAAAAACAAAAGGACTCGAG
ACTCCCTAGGGTTGTTCTGAAAGAAGCAGGACCGCGTTTTGACTTGGAGG
TCAGACGTTCAAGAATCGCTTCAGAGGCATTGATGAAGAGCGCCTTGAAG
AGGCCCCGAGACCCAGCCTATGTCCGTAAAGTGAAGAATGTTTCCCGCGA
TGAGATGGGGGATAAGAAGGGCCGCATTCATCTTGGTAGGCAAGACCTGA
GCAAGCTCGCCCTCGCTCGTATGAAAGGCTTAGACAGTCGGCGACAAGTA
GATGACGCTGATGCTCGCGAGGCAAAGGAAATCGACACTAAAAACGGTGA
AGAGAATATGCAGGAAGAAGAAACTGGAATTGGTACCATTGAAAATGTTG
AGCCAGTCAGCAAGCGCTTGAAGGTCGAAACGTTATCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1472230..1473270-

>Gvermi5373.t1 ID=Gvermi5373.t1|Name=Gvermi5373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24228:1472230..1473270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTATAAAGTATAACCATAGCCATGTGGTATCGCGAGCCAAAAGTGG
ATCTGGGCGGCGCGCACTCGAATCTCGAATGCCCAAGGTTATTGAAACGC
CGAAGACCTTGTTGGCGCTGAAAGGTCATGCAACATCTGTTGTTGGTATT
AATCTGCTGAATGATCTGTATCTTTTGAAGAAACCGCTCTGCAAGAAACT
TCAACGAAAGAACGACTTGCTTCCTTTTGAGGCTGGTGGAGAAGCACATT
TAGAGAATCTCGCACGGCTCAACAACTGCTCTCTTTTTGCAGTCGTCAAT
CACAATAAGAAACGTCCTCACAACATTATTTTTGGCCGCACTTTTGGGTT
TCGCATATTGGATATGCTCGAGTTCGGTATATCCAATTATACCCCTCTTG
CACGATTCCGATCCCTGAAGAGCTTCCCAGGGTCAAAGCCAATGCTTCTC
TTTAATGGAGACGATTACGGCGTGACTGAAACTACAATGACAATTCGCTC
AATTCTTTTGGATGTATTCCGTGGCGGTGATGATGTTCGTGGATTGAATC
TGGCTGGTGTGGATCGAGTTATCGTGTTCACCTTGCAAGGAGAAAGAAAA
GTGTTGTTTCGACAGTACGCTGTGGAACTAAAAAAACAAAAGGACTCGAG
ACTCCCTAGGGTTGTTCTGAAAGAAGCAGGACCGCGTTTTGACTTGGAGG
TCAGACGTTCAAGAATCGCTTCAGAGGCATTGATGAAGAGCGCCTTGAAG
AGGCCCCGAGACCCAGCCTATGTCCGTAAAGTGAAGAATGTTTCCCGCGA
TGAGATGGGGGATAAGAAGGGCCGCATTCATCTTGGTAGGCAAGACCTGA
GCAAGCTCGCCCTCGCTCGTATGAAAGGCTTAGACAGTCGGCGACAAGTA
GATGACGCTGATGCTCGCGAGGCAAAGGAAATCGACACTAAAAACGGTGA
AGAGAATATGCAGGAAGAAGAAACTGGAATTGGTACCATTGAAAATGTTG
AGCCAGTCAGCAAGCGCTTGAAGGTCGAAACGTTATCGTAG
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