Gvermi5337.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5337.t1
Unique NameGvermi5337.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1295179..1296468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERM95242
PFAMsNop,Prp31_C
Max annot lvl35493|Streptophyta
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Evalue4.68e-79
EggNOG OGsCOG1498@1|root,KOG2574@2759|Eukaryota,37I4D@33090|Viridiplantae,3G7PQ@35493|Streptophyta
DescriptionU4 U6 small nuclear ribonucleoprotein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5337Gvermi5337Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1295179..1296468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5337.t1.stop1Gvermi5337.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1295179..1295181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5337.t1.CDS1Gvermi5337.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1295179..1296468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5337.t1.exon1Gvermi5337.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1295179..1296468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5337.t1.start1Gvermi5337.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1296466..1296468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5337.t1Gvermi5337.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1295179..1296468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5337.t1 ID=Gvermi5337.t1|Name=Gvermi5337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MERATEYQIRSLLAEIDRQSESEEALVGSLIRCAPAIAVIDDNIKKSHQS
LKKAFAPRFPELETFVFDPIEYAQVSKLAAKEQDLSKIDLRSILPSGTAI
TVQLTASSTTGRILGAEELQVVYGLCDDIIRLDTWKTRLLHHVERNAVLI
APNLVAITDGAVAAKLIGHAGGLKQLAQMPASNVKLLGKKKKALQGTSTA
TTRIHEGVIHSCPLVMSLPKQYRSKAGDVTAGKAVLAARVDLGRQSGDGS
VGQSYRKALEAKFEQWMEPPPARTLKPLPIPGDEAKRKHRGGKRARKEKE
RLGLTEMRRLANRVSFGVREQEGELEGEGLGMLGAEGSKKLRVKPKKSSS
VSMAAKRALDKQKKKDVRSDAELFGTSGSGDVSTGTEIQLPAPTSFPTVK
AAESQSYFAASTPFYGVKRRRINNSDADK*
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spliced messenger RNA

>Gvermi5337.t1 ID=Gvermi5337.t1|Name=Gvermi5337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_24228:1295179..1296468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGTGCGACGGAGTATCAGATACGGTCACTTCTGGCCGAAATTGA
TCGTCAGTCGGAATCTGAGGAGGCGCTTGTCGGTTCATTAATTCGCTGCG
CTCCGGCGATTGCAGTCATCGACGATAATATCAAGAAATCCCATCAATCC
CTCAAGAAAGCCTTCGCCCCTCGTTTCCCAGAGCTAGAAACATTCGTTTT
CGACCCCATCGAGTATGCGCAAGTATCAAAACTGGCAGCAAAAGAACAGG
ATCTTTCCAAGATAGATCTGCGAAGCATCTTGCCCTCCGGAACCGCAATA
ACTGTTCAGTTGACTGCATCGTCAACCACAGGGCGAATATTGGGAGCAGA
AGAGCTTCAAGTCGTCTACGGACTTTGCGACGATATAATCAGGTTAGATA
CATGGAAAACGCGCCTGCTCCACCACGTTGAACGAAATGCGGTTCTTATT
GCCCCAAATCTTGTCGCTATTACAGATGGTGCTGTTGCTGCTAAGCTTAT
CGGACACGCTGGGGGTCTCAAACAGCTTGCGCAGATGCCAGCCTCGAATG
TCAAGCTTCTCGGAAAGAAAAAGAAGGCGCTCCAAGGAACATCGACAGCC
ACAACACGAATTCACGAGGGAGTAATTCACTCGTGCCCCCTTGTGATGAG
TCTACCGAAGCAATATCGTTCCAAGGCTGGGGACGTCACCGCCGGCAAGG
CAGTATTGGCGGCCCGTGTTGACCTTGGTCGGCAGAGCGGGGACGGGTCT
GTCGGACAAAGCTACCGGAAGGCTCTCGAAGCCAAATTTGAGCAGTGGAT
GGAGCCTCCACCGGCGCGGACTCTGAAGCCGTTGCCGATACCCGGCGATG
AGGCTAAGCGCAAGCACCGCGGAGGAAAACGTGCGCGAAAGGAAAAGGAA
CGTCTGGGTCTCACTGAAATGCGCCGTTTAGCGAATCGGGTGTCGTTCGG
CGTTAGAGAGCAGGAAGGAGAACTAGAAGGTGAGGGCTTGGGAATGCTAG
GCGCCGAAGGGTCTAAGAAACTGCGAGTGAAGCCGAAAAAGTCATCCTCA
GTTAGCATGGCCGCCAAGCGAGCGTTGGATAAACAGAAGAAGAAAGATGT
ACGGAGCGACGCAGAATTATTCGGCACATCGGGATCAGGGGATGTTAGCA
CTGGTACAGAGATTCAGCTACCGGCTCCGACCTCATTCCCGACGGTGAAA
GCCGCAGAATCACAAAGCTACTTTGCCGCTTCGACGCCATTTTATGGCGT
AAAGAGACGGCGAATAAATAACTCTGATGCGGATAAATAG
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protein sequence of Gvermi5337.t1

>Gvermi5337.t1 ID=Gvermi5337.t1|Name=Gvermi5337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MERATEYQIRSLLAEIDRQSESEEALVGSLIRCAPAIAVIDDNIKKSHQS
LKKAFAPRFPELETFVFDPIEYAQVSKLAAKEQDLSKIDLRSILPSGTAI
TVQLTASSTTGRILGAEELQVVYGLCDDIIRLDTWKTRLLHHVERNAVLI
APNLVAITDGAVAAKLIGHAGGLKQLAQMPASNVKLLGKKKKALQGTSTA
TTRIHEGVIHSCPLVMSLPKQYRSKAGDVTAGKAVLAARVDLGRQSGDGS
VGQSYRKALEAKFEQWMEPPPARTLKPLPIPGDEAKRKHRGGKRARKEKE
RLGLTEMRRLANRVSFGVREQEGELEGEGLGMLGAEGSKKLRVKPKKSSS
VSMAAKRALDKQKKKDVRSDAELFGTSGSGDVSTGTEIQLPAPTSFPTVK
AAESQSYFAASTPFYGVKRRRINNSDADK*
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mRNA from alignment at ScGOVlb_24228:1295179..1296468-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5337.t1 ID=Gvermi5337.t1|Name=Gvermi5337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_24228:1295179..1296468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGTGCGACGGAGTATCAGATACGGTCACTTCTGGCCGAAATTGA
TCGTCAGTCGGAATCTGAGGAGGCGCTTGTCGGTTCATTAATTCGCTGCG
CTCCGGCGATTGCAGTCATCGACGATAATATCAAGAAATCCCATCAATCC
CTCAAGAAAGCCTTCGCCCCTCGTTTCCCAGAGCTAGAAACATTCGTTTT
CGACCCCATCGAGTATGCGCAAGTATCAAAACTGGCAGCAAAAGAACAGG
ATCTTTCCAAGATAGATCTGCGAAGCATCTTGCCCTCCGGAACCGCAATA
ACTGTTCAGTTGACTGCATCGTCAACCACAGGGCGAATATTGGGAGCAGA
AGAGCTTCAAGTCGTCTACGGACTTTGCGACGATATAATCAGGTTAGATA
CATGGAAAACGCGCCTGCTCCACCACGTTGAACGAAATGCGGTTCTTATT
GCCCCAAATCTTGTCGCTATTACAGATGGTGCTGTTGCTGCTAAGCTTAT
CGGACACGCTGGGGGTCTCAAACAGCTTGCGCAGATGCCAGCCTCGAATG
TCAAGCTTCTCGGAAAGAAAAAGAAGGCGCTCCAAGGAACATCGACAGCC
ACAACACGAATTCACGAGGGAGTAATTCACTCGTGCCCCCTTGTGATGAG
TCTACCGAAGCAATATCGTTCCAAGGCTGGGGACGTCACCGCCGGCAAGG
CAGTATTGGCGGCCCGTGTTGACCTTGGTCGGCAGAGCGGGGACGGGTCT
GTCGGACAAAGCTACCGGAAGGCTCTCGAAGCCAAATTTGAGCAGTGGAT
GGAGCCTCCACCGGCGCGGACTCTGAAGCCGTTGCCGATACCCGGCGATG
AGGCTAAGCGCAAGCACCGCGGAGGAAAACGTGCGCGAAAGGAAAAGGAA
CGTCTGGGTCTCACTGAAATGCGCCGTTTAGCGAATCGGGTGTCGTTCGG
CGTTAGAGAGCAGGAAGGAGAACTAGAAGGTGAGGGCTTGGGAATGCTAG
GCGCCGAAGGGTCTAAGAAACTGCGAGTGAAGCCGAAAAAGTCATCCTCA
GTTAGCATGGCCGCCAAGCGAGCGTTGGATAAACAGAAGAAGAAAGATGT
ACGGAGCGACGCAGAATTATTCGGCACATCGGGATCAGGGGATGTTAGCA
CTGGTACAGAGATTCAGCTACCGGCTCCGACCTCATTCCCGACGGTGAAA
GCCGCAGAATCACAAAGCTACTTTGCCGCTTCGACGCCATTTTATGGCGT
AAAGAGACGGCGAATAAATAACTCTGATGCGGATAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1295179..1296468-

>Gvermi5337.t1 ID=Gvermi5337.t1|Name=Gvermi5337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_24228:1295179..1296468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGTGCGACGGAGTATCAGATACGGTCACTTCTGGCCGAAATTGA
TCGTCAGTCGGAATCTGAGGAGGCGCTTGTCGGTTCATTAATTCGCTGCG
CTCCGGCGATTGCAGTCATCGACGATAATATCAAGAAATCCCATCAATCC
CTCAAGAAAGCCTTCGCCCCTCGTTTCCCAGAGCTAGAAACATTCGTTTT
CGACCCCATCGAGTATGCGCAAGTATCAAAACTGGCAGCAAAAGAACAGG
ATCTTTCCAAGATAGATCTGCGAAGCATCTTGCCCTCCGGAACCGCAATA
ACTGTTCAGTTGACTGCATCGTCAACCACAGGGCGAATATTGGGAGCAGA
AGAGCTTCAAGTCGTCTACGGACTTTGCGACGATATAATCAGGTTAGATA
CATGGAAAACGCGCCTGCTCCACCACGTTGAACGAAATGCGGTTCTTATT
GCCCCAAATCTTGTCGCTATTACAGATGGTGCTGTTGCTGCTAAGCTTAT
CGGACACGCTGGGGGTCTCAAACAGCTTGCGCAGATGCCAGCCTCGAATG
TCAAGCTTCTCGGAAAGAAAAAGAAGGCGCTCCAAGGAACATCGACAGCC
ACAACACGAATTCACGAGGGAGTAATTCACTCGTGCCCCCTTGTGATGAG
TCTACCGAAGCAATATCGTTCCAAGGCTGGGGACGTCACCGCCGGCAAGG
CAGTATTGGCGGCCCGTGTTGACCTTGGTCGGCAGAGCGGGGACGGGTCT
GTCGGACAAAGCTACCGGAAGGCTCTCGAAGCCAAATTTGAGCAGTGGAT
GGAGCCTCCACCGGCGCGGACTCTGAAGCCGTTGCCGATACCCGGCGATG
AGGCTAAGCGCAAGCACCGCGGAGGAAAACGTGCGCGAAAGGAAAAGGAA
CGTCTGGGTCTCACTGAAATGCGCCGTTTAGCGAATCGGGTGTCGTTCGG
CGTTAGAGAGCAGGAAGGAGAACTAGAAGGTGAGGGCTTGGGAATGCTAG
GCGCCGAAGGGTCTAAGAAACTGCGAGTGAAGCCGAAAAAGTCATCCTCA
GTTAGCATGGCCGCCAAGCGAGCGTTGGATAAACAGAAGAAGAAAGATGT
ACGGAGCGACGCAGAATTATTCGGCACATCGGGATCAGGGGATGTTAGCA
CTGGTACAGAGATTCAGCTACCGGCTCCGACCTCATTCCCGACGGTGAAA
GCCGCAGAATCACAAAGCTACTTTGCCGCTTCGACGCCATTTTATGGCGT
AAAGAGACGGCGAATAAATAACTCTGATGCGGATAAATAG
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