Gvermi5311.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5311.t1
Unique NameGvermi5311.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1182805..1184169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT024CT
Preferred nameAS3MT
PFAMsMethyltransf_31
Max annot lvl2759|Eukaryota
KEGG koko:K07755
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009404,GO:0009410,GO:0009987,GO:0016740,GO:0016741,GO:0018872,GO:0019538,GO:0019748,GO:0019752,GO:0030791,GO:0030792,GO:0032259,GO:0032787,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046685,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0140096,GO:1901564
Evalue5.07e-118
EggNOG OGs2CMHQ@1|root,2QQD6@2759|Eukaryota
EC2.1.1.137
Descriptionarsonoacetate metabolic process
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5311Gvermi5311Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1182805..1184169 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5311.t1.stop1Gvermi5311.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1182805..1182807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5311.t1.CDS1Gvermi5311.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1182805..1184169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5311.t1.exon1Gvermi5311.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1182805..1184169 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5311.t1.start1Gvermi5311.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1184167..1184169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5311.t1Gvermi5311.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1182805..1184169 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5311.t1 ID=Gvermi5311.t1|Name=Gvermi5311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=455bp
MEPEKQRQSVTKYYSSTLSSTADLKTSACCPIDAVPESHRPILAKLHPEV
TSRFYGCGSPIPSHLKGCTLLDLGCGTGRDAYLSSALVGQTGSVIGIDMT
PEQLEIANRHRQYHATQFFGPQAESNVQFRKGFIEDLRSADIHDASVDVV
ISNCVCNLSPDKKAVFSEVSRVLKQGGEFYFSDVYADRRLTKEAACHEVL
VGECLGGALYVQDFCTIMNQVGFPDVRIVSAAPIDLHDTELRKLVPDVTF
YSLTIRAFKITSLEHTREDYGQTATYKSCGNGLQFDIDYSFKRGVPAAVD
SNTAAILQQSRYSRLFTVAERGDHRGSFKRAPESSSDILDISCFRAMPLP
AVAAKPVKGGCCPPTSLISGAESAKVSPIAKTSSCCAVVSDCSSGANKHD
SQKKTSCTPSQAEDSKPGKTEEAHEKETVSCCQPQTEGNQTKSSTCRPAR
KGCC*
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spliced messenger RNA

>Gvermi5311.t1 ID=Gvermi5311.t1|Name=Gvermi5311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_24228:1182805..1184169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGAAAAGCAACGTCAATCGGTCACTAAATACTACTCGTCTAC
TCTATCTTCAACGGCTGATCTGAAGACCTCGGCCTGCTGCCCAATCGATG
CCGTGCCAGAGTCGCACCGCCCCATTCTTGCCAAGCTCCATCCAGAGGTA
ACCTCCCGTTTCTACGGTTGCGGCTCGCCCATTCCGTCCCATCTGAAAGG
CTGCACTTTACTCGACCTCGGCTGTGGAACTGGACGCGATGCGTACCTCT
CTTCGGCGCTTGTTGGTCAGACTGGCTCTGTAATTGGCATTGATATGACC
CCTGAGCAACTTGAAATTGCAAACCGCCATCGCCAATATCATGCTACCCA
GTTCTTTGGACCGCAAGCCGAGTCGAACGTCCAGTTCCGCAAGGGTTTCA
TTGAAGACTTACGCTCAGCCGACATCCACGATGCATCTGTCGACGTCGTT
ATTTCGAACTGCGTTTGTAACCTAAGCCCTGACAAGAAGGCTGTGTTCTC
TGAGGTTTCTCGCGTACTCAAACAAGGTGGAGAGTTTTACTTCTCAGACG
TGTACGCCGACCGCCGCTTGACCAAGGAAGCCGCTTGTCATGAAGTTCTA
GTCGGCGAATGTCTGGGCGGTGCTCTGTACGTACAAGATTTTTGTACCAT
AATGAATCAAGTTGGGTTTCCGGATGTTCGCATTGTCTCGGCTGCTCCGA
TTGACTTGCATGATACGGAGCTTCGCAAGCTCGTGCCGGATGTTACCTTT
TATTCACTGACAATACGTGCCTTTAAAATCACTTCCTTGGAACACACAAG
GGAAGACTACGGCCAAACTGCAACGTATAAATCTTGCGGTAATGGCCTTC
AATTCGATATTGACTACAGCTTCAAAAGAGGAGTACCCGCCGCGGTTGAT
TCAAACACGGCTGCCATACTGCAGCAGTCGAGATACAGCCGGTTATTCAC
TGTAGCTGAGCGCGGTGATCATCGCGGCTCATTCAAGCGAGCCCCTGAGA
GCTCTTCTGACATATTGGATATCAGCTGTTTCCGTGCAATGCCACTTCCA
GCAGTCGCGGCAAAGCCGGTGAAAGGTGGTTGTTGCCCTCCGACGTCGCT
GATTTCCGGTGCGGAATCGGCAAAAGTCTCTCCGATAGCAAAGACATCTT
CGTGCTGTGCAGTTGTCTCGGACTGTAGTTCTGGAGCCAATAAGCATGAC
TCCCAGAAAAAGACTTCTTGTACACCGTCTCAAGCTGAGGACTCTAAGCC
AGGTAAAACCGAGGAAGCGCATGAGAAAGAAACTGTTTCGTGTTGTCAAC
CCCAAACGGAGGGCAACCAGACGAAGTCATCTACTTGTCGCCCAGCCCGA
AAGGGTTGCTGTTAG
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protein sequence of Gvermi5311.t1

>Gvermi5311.t1 ID=Gvermi5311.t1|Name=Gvermi5311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=455bp
MEPEKQRQSVTKYYSSTLSSTADLKTSACCPIDAVPESHRPILAKLHPEV
TSRFYGCGSPIPSHLKGCTLLDLGCGTGRDAYLSSALVGQTGSVIGIDMT
PEQLEIANRHRQYHATQFFGPQAESNVQFRKGFIEDLRSADIHDASVDVV
ISNCVCNLSPDKKAVFSEVSRVLKQGGEFYFSDVYADRRLTKEAACHEVL
VGECLGGALYVQDFCTIMNQVGFPDVRIVSAAPIDLHDTELRKLVPDVTF
YSLTIRAFKITSLEHTREDYGQTATYKSCGNGLQFDIDYSFKRGVPAAVD
SNTAAILQQSRYSRLFTVAERGDHRGSFKRAPESSSDILDISCFRAMPLP
AVAAKPVKGGCCPPTSLISGAESAKVSPIAKTSSCCAVVSDCSSGANKHD
SQKKTSCTPSQAEDSKPGKTEEAHEKETVSCCQPQTEGNQTKSSTCRPAR
KGCC*
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mRNA from alignment at ScGOVlb_24228:1182805..1184169-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5311.t1 ID=Gvermi5311.t1|Name=Gvermi5311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_24228:1182805..1184169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCCCGAAAAGCAACGTCAATCGGTCACTAAATACTACTCGTCTAC
TCTATCTTCAACGGCTGATCTGAAGACCTCGGCCTGCTGCCCAATCGATG
CCGTGCCAGAGTCGCACCGCCCCATTCTTGCCAAGCTCCATCCAGAGGTA
ACCTCCCGTTTCTACGGTTGCGGCTCGCCCATTCCGTCCCATCTGAAAGG
CTGCACTTTACTCGACCTCGGCTGTGGAACTGGACGCGATGCGTACCTCT
CTTCGGCGCTTGTTGGTCAGACTGGCTCTGTAATTGGCATTGATATGACC
CCTGAGCAACTTGAAATTGCAAACCGCCATCGCCAATATCATGCTACCCA
GTTCTTTGGACCGCAAGCCGAGTCGAACGTCCAGTTCCGCAAGGGTTTCA
TTGAAGACTTACGCTCAGCCGACATCCACGATGCATCTGTCGACGTCGTT
ATTTCGAACTGCGTTTGTAACCTAAGCCCTGACAAGAAGGCTGTGTTCTC
TGAGGTTTCTCGCGTACTCAAACAAGGTGGAGAGTTTTACTTCTCAGACG
TGTACGCCGACCGCCGCTTGACCAAGGAAGCCGCTTGTCATGAAGTTCTA
GTCGGCGAATGTCTGGGCGGTGCTCTGTACGTACAAGATTTTTGTACCAT
AATGAATCAAGTTGGGTTTCCGGATGTTCGCATTGTCTCGGCTGCTCCGA
TTGACTTGCATGATACGGAGCTTCGCAAGCTCGTGCCGGATGTTACCTTT
TATTCACTGACAATACGTGCCTTTAAAATCACTTCCTTGGAACACACAAG
GGAAGACTACGGCCAAACTGCAACGTATAAATCTTGCGGTAATGGCCTTC
AATTCGATATTGACTACAGCTTCAAAAGAGGAGTACCCGCCGCGGTTGAT
TCAAACACGGCTGCCATACTGCAGCAGTCGAGATACAGCCGGTTATTCAC
TGTAGCTGAGCGCGGTGATCATCGCGGCTCATTCAAGCGAGCCCCTGAGA
GCTCTTCTGACATATTGGATATCAGCTGTTTCCGTGCAATGCCACTTCCA
GCAGTCGCGGCAAAGCCGGTGAAAGGTGGTTGTTGCCCTCCGACGTCGCT
GATTTCCGGTGCGGAATCGGCAAAAGTCTCTCCGATAGCAAAGACATCTT
CGTGCTGTGCAGTTGTCTCGGACTGTAGTTCTGGAGCCAATAAGCATGAC
TCCCAGAAAAAGACTTCTTGTACACCGTCTCAAGCTGAGGACTCTAAGCC
AGGTAAAACCGAGGAAGCGCATGAGAAAGAAACTGTTTCGTGTTGTCAAC
CCCAAACGGAGGGCAACCAGACGAAGTCATCTACTTGTCGCCCAGCCCGA
AAGGGTTGCTGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1182805..1184169-

>Gvermi5311.t1 ID=Gvermi5311.t1|Name=Gvermi5311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1365bp|location=Sequence derived from alignment at ScGOVlb_24228:1182805..1184169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCCCGAAAAGCAACGTCAATCGGTCACTAAATACTACTCGTCTAC
TCTATCTTCAACGGCTGATCTGAAGACCTCGGCCTGCTGCCCAATCGATG
CCGTGCCAGAGTCGCACCGCCCCATTCTTGCCAAGCTCCATCCAGAGGTA
ACCTCCCGTTTCTACGGTTGCGGCTCGCCCATTCCGTCCCATCTGAAAGG
CTGCACTTTACTCGACCTCGGCTGTGGAACTGGACGCGATGCGTACCTCT
CTTCGGCGCTTGTTGGTCAGACTGGCTCTGTAATTGGCATTGATATGACC
CCTGAGCAACTTGAAATTGCAAACCGCCATCGCCAATATCATGCTACCCA
GTTCTTTGGACCGCAAGCCGAGTCGAACGTCCAGTTCCGCAAGGGTTTCA
TTGAAGACTTACGCTCAGCCGACATCCACGATGCATCTGTCGACGTCGTT
ATTTCGAACTGCGTTTGTAACCTAAGCCCTGACAAGAAGGCTGTGTTCTC
TGAGGTTTCTCGCGTACTCAAACAAGGTGGAGAGTTTTACTTCTCAGACG
TGTACGCCGACCGCCGCTTGACCAAGGAAGCCGCTTGTCATGAAGTTCTA
GTCGGCGAATGTCTGGGCGGTGCTCTGTACGTACAAGATTTTTGTACCAT
AATGAATCAAGTTGGGTTTCCGGATGTTCGCATTGTCTCGGCTGCTCCGA
TTGACTTGCATGATACGGAGCTTCGCAAGCTCGTGCCGGATGTTACCTTT
TATTCACTGACAATACGTGCCTTTAAAATCACTTCCTTGGAACACACAAG
GGAAGACTACGGCCAAACTGCAACGTATAAATCTTGCGGTAATGGCCTTC
AATTCGATATTGACTACAGCTTCAAAAGAGGAGTACCCGCCGCGGTTGAT
TCAAACACGGCTGCCATACTGCAGCAGTCGAGATACAGCCGGTTATTCAC
TGTAGCTGAGCGCGGTGATCATCGCGGCTCATTCAAGCGAGCCCCTGAGA
GCTCTTCTGACATATTGGATATCAGCTGTTTCCGTGCAATGCCACTTCCA
GCAGTCGCGGCAAAGCCGGTGAAAGGTGGTTGTTGCCCTCCGACGTCGCT
GATTTCCGGTGCGGAATCGGCAAAAGTCTCTCCGATAGCAAAGACATCTT
CGTGCTGTGCAGTTGTCTCGGACTGTAGTTCTGGAGCCAATAAGCATGAC
TCCCAGAAAAAGACTTCTTGTACACCGTCTCAAGCTGAGGACTCTAAGCC
AGGTAAAACCGAGGAAGCGCATGAGAAAGAAACTGTTTCGTGTTGTCAAC
CCCAAACGGAGGGCAACCAGACGAAGTCATCTACTTGTCGCCCAGCCCGA
AAGGGTTGCTGTTAG
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