Gvermi5292.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5292.t1
Unique NameGvermi5292.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:984957..986690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog414684.RC1_1401
Preferred nameder
PFAMsKH_dom-like,MMR_HSR1
Max annot lvl204441|Rhodospirillales
KEGG koko:K03977
Evalue1.22e-78
EggNOG OGsCOG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2TT38@28211|Alphaproteobacteria,2JQT7@204441|Rhodospirillales
DescriptionGTPase that plays an essential role in the late steps of ribosome biogenesis
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5292Gvermi5292Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 984957..986690 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5292.t1.stop1Gvermi5292.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 984957..984959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5292.t1.CDS1Gvermi5292.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 984957..986690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5292.t1.exon1Gvermi5292.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 984957..986690 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5292.t1.start1Gvermi5292.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 986688..986690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5292.t1Gvermi5292.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 984957..986690 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5292.t1 ID=Gvermi5292.t1|Name=Gvermi5292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=578bp
MRLRALSALRALHSGARVPLPGAGSRSAPAPVVYAHTHLTAALVGRPNVG
KSTLFNRLAAALRGRQTDAQGTPPLSFVRSVVHPLPGVTRDARRAAGAVS
DLLLNIVDTPGLECAVSEREHVDADETAPFADGTSLVDAVAHCEHAAYRR
VYAHMKNATIDAVKQANLILFIIDASVGLTSLDHAHAKWLHSCLTPQKSI
ILLANKCDVAHSDTHALEAYELGFGHPVLISAEQALGLADLYERIRHISP
PPHTEQKQQLMHSPASHVSDPEAEMRQSFDEDLVITTSARLQEQPLQQVI
VSIIGRPNVGKSTLVNRLVGQQRSIVGAAAGVTRDAVLCPWKPQYERHDY
PPVWLVDTPGVRAQPKVSADDLERLMVRASLQALRSSHVVVVVIDAVESL
TRQDVKLMDVVITEGRAVVLVVNKIDNLDPDGILDWRARLRYDVDSKLEQ
LKGVPVVEMSALNWNDDPSQGKRLYEAIQRARERWEKRVPTSALNRFVKA
FNERMSIGGGTRGERRNRVGVTKFITQKKIRPPVFRLDGSSAVSMNYLRA
LGNALRHEFGFEGVPIRVKRPSRRRRR*
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spliced messenger RNA

>Gvermi5292.t1 ID=Gvermi5292.t1|Name=Gvermi5292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_24228:984957..986690- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTGCGCGCGCTGTCTGCGCTGCGCGCGCTGCACTCCGGCGCGCG
CGTCCCGCTGCCCGGTGCGGGCTCGCGGTCCGCGCCCGCGCCCGTCGTCT
ATGCGCACACACACCTTACCGCCGCACTGGTAGGCCGTCCCAATGTCGGC
AAGTCCACGCTGTTCAACCGCCTCGCCGCCGCCCTTCGCGGCCGCCAGAC
AGACGCCCAAGGCACCCCACCGCTGTCCTTCGTGCGCTCCGTCGTGCATC
CGCTGCCGGGCGTCACCCGCGACGCCCGGCGCGCCGCCGGCGCCGTCTCC
GACCTCTTGCTCAACATTGTCGACACCCCCGGCCTGGAGTGCGCTGTCTC
TGAGCGCGAACATGTCGACGCCGACGAGACCGCCCCCTTTGCTGACGGCA
CATCGCTGGTCGACGCCGTCGCCCACTGCGAGCACGCCGCCTACCGTCGC
GTCTACGCCCACATGAAGAACGCCACCATCGATGCTGTCAAACAAGCCAA
TCTTATTCTCTTCATTATTGACGCCTCGGTCGGCCTCACCTCCCTAGATC
ATGCGCACGCAAAGTGGCTGCACTCTTGTCTAACTCCGCAAAAGTCTATC
ATCCTGCTCGCAAACAAATGCGATGTAGCGCACTCAGACACCCACGCGCT
TGAGGCATACGAGCTCGGTTTCGGCCATCCTGTCCTCATTTCGGCCGAAC
AAGCTCTAGGTCTTGCTGATTTATACGAGCGCATCCGTCACATCTCCCCC
CCACCGCACACCGAGCAGAAACAGCAACTCATGCATTCCCCAGCGTCGCA
TGTAAGCGACCCAGAGGCTGAGATGCGTCAGTCCTTCGATGAAGATCTCG
TCATCACCACTTCTGCCCGCCTCCAAGAGCAGCCATTGCAGCAAGTAATC
GTGTCCATCATTGGTCGCCCAAACGTCGGCAAATCCACTCTGGTCAACAG
ACTTGTCGGTCAACAGCGTTCTATCGTCGGCGCCGCGGCTGGCGTCACCC
GTGACGCCGTGTTATGCCCGTGGAAACCGCAGTATGAGCGGCATGACTAC
CCACCCGTATGGTTAGTCGACACTCCTGGCGTCCGAGCGCAGCCCAAGGT
TAGTGCCGATGACCTCGAGAGGCTCATGGTCAGAGCTTCACTACAAGCCT
TAAGATCCAGTCATGTCGTAGTCGTTGTCATTGACGCAGTTGAATCGCTC
ACCCGCCAGGACGTCAAGTTGATGGACGTTGTCATTACTGAGGGGCGCGC
TGTCGTGCTTGTTGTCAACAAGATTGACAACCTGGACCCTGATGGCATTC
TTGATTGGAGAGCTCGTCTGCGCTATGACGTCGATAGCAAATTGGAGCAA
TTGAAAGGTGTTCCAGTCGTAGAGATGTCAGCGTTGAATTGGAATGACGA
TCCCAGTCAAGGAAAACGTCTATACGAAGCTATTCAGCGTGCTCGAGAAA
GATGGGAGAAGCGAGTGCCGACTTCAGCCTTGAATCGTTTTGTGAAAGCC
TTTAATGAGCGTATGTCAATCGGTGGTGGAACAAGGGGAGAGCGACGAAA
TCGCGTTGGAGTTACCAAGTTCATAACACAGAAAAAGATTCGTCCTCCAG
TGTTTCGGTTGGATGGGTCTTCTGCTGTGTCGATGAACTATCTTCGAGCT
TTAGGAAATGCCCTGCGACATGAGTTTGGGTTTGAAGGCGTGCCTATTCG
CGTGAAGAGACCATCTAGACGAAGGAGGCGTTAA
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protein sequence of Gvermi5292.t1

>Gvermi5292.t1 ID=Gvermi5292.t1|Name=Gvermi5292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=578bp
MRLRALSALRALHSGARVPLPGAGSRSAPAPVVYAHTHLTAALVGRPNVG
KSTLFNRLAAALRGRQTDAQGTPPLSFVRSVVHPLPGVTRDARRAAGAVS
DLLLNIVDTPGLECAVSEREHVDADETAPFADGTSLVDAVAHCEHAAYRR
VYAHMKNATIDAVKQANLILFIIDASVGLTSLDHAHAKWLHSCLTPQKSI
ILLANKCDVAHSDTHALEAYELGFGHPVLISAEQALGLADLYERIRHISP
PPHTEQKQQLMHSPASHVSDPEAEMRQSFDEDLVITTSARLQEQPLQQVI
VSIIGRPNVGKSTLVNRLVGQQRSIVGAAAGVTRDAVLCPWKPQYERHDY
PPVWLVDTPGVRAQPKVSADDLERLMVRASLQALRSSHVVVVVIDAVESL
TRQDVKLMDVVITEGRAVVLVVNKIDNLDPDGILDWRARLRYDVDSKLEQ
LKGVPVVEMSALNWNDDPSQGKRLYEAIQRARERWEKRVPTSALNRFVKA
FNERMSIGGGTRGERRNRVGVTKFITQKKIRPPVFRLDGSSAVSMNYLRA
LGNALRHEFGFEGVPIRVKRPSRRRRR*
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mRNA from alignment at ScGOVlb_24228:984957..986690-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5292.t1 ID=Gvermi5292.t1|Name=Gvermi5292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_24228:984957..986690- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTGCGCGCGCTGTCTGCGCTGCGCGCGCTGCACTCCGGCGCGCG
CGTCCCGCTGCCCGGTGCGGGCTCGCGGTCCGCGCCCGCGCCCGTCGTCT
ATGCGCACACACACCTTACCGCCGCACTGGTAGGCCGTCCCAATGTCGGC
AAGTCCACGCTGTTCAACCGCCTCGCCGCCGCCCTTCGCGGCCGCCAGAC
AGACGCCCAAGGCACCCCACCGCTGTCCTTCGTGCGCTCCGTCGTGCATC
CGCTGCCGGGCGTCACCCGCGACGCCCGGCGCGCCGCCGGCGCCGTCTCC
GACCTCTTGCTCAACATTGTCGACACCCCCGGCCTGGAGTGCGCTGTCTC
TGAGCGCGAACATGTCGACGCCGACGAGACCGCCCCCTTTGCTGACGGCA
CATCGCTGGTCGACGCCGTCGCCCACTGCGAGCACGCCGCCTACCGTCGC
GTCTACGCCCACATGAAGAACGCCACCATCGATGCTGTCAAACAAGCCAA
TCTTATTCTCTTCATTATTGACGCCTCGGTCGGCCTCACCTCCCTAGATC
ATGCGCACGCAAAGTGGCTGCACTCTTGTCTAACTCCGCAAAAGTCTATC
ATCCTGCTCGCAAACAAATGCGATGTAGCGCACTCAGACACCCACGCGCT
TGAGGCATACGAGCTCGGTTTCGGCCATCCTGTCCTCATTTCGGCCGAAC
AAGCTCTAGGTCTTGCTGATTTATACGAGCGCATCCGTCACATCTCCCCC
CCACCGCACACCGAGCAGAAACAGCAACTCATGCATTCCCCAGCGTCGCA
TGTAAGCGACCCAGAGGCTGAGATGCGTCAGTCCTTCGATGAAGATCTCG
TCATCACCACTTCTGCCCGCCTCCAAGAGCAGCCATTGCAGCAAGTAATC
GTGTCCATCATTGGTCGCCCAAACGTCGGCAAATCCACTCTGGTCAACAG
ACTTGTCGGTCAACAGCGTTCTATCGTCGGCGCCGCGGCTGGCGTCACCC
GTGACGCCGTGTTATGCCCGTGGAAACCGCAGTATGAGCGGCATGACTAC
CCACCCGTATGGTTAGTCGACACTCCTGGCGTCCGAGCGCAGCCCAAGGT
TAGTGCCGATGACCTCGAGAGGCTCATGGTCAGAGCTTCACTACAAGCCT
TAAGATCCAGTCATGTCGTAGTCGTTGTCATTGACGCAGTTGAATCGCTC
ACCCGCCAGGACGTCAAGTTGATGGACGTTGTCATTACTGAGGGGCGCGC
TGTCGTGCTTGTTGTCAACAAGATTGACAACCTGGACCCTGATGGCATTC
TTGATTGGAGAGCTCGTCTGCGCTATGACGTCGATAGCAAATTGGAGCAA
TTGAAAGGTGTTCCAGTCGTAGAGATGTCAGCGTTGAATTGGAATGACGA
TCCCAGTCAAGGAAAACGTCTATACGAAGCTATTCAGCGTGCTCGAGAAA
GATGGGAGAAGCGAGTGCCGACTTCAGCCTTGAATCGTTTTGTGAAAGCC
TTTAATGAGCGTATGTCAATCGGTGGTGGAACAAGGGGAGAGCGACGAAA
TCGCGTTGGAGTTACCAAGTTCATAACACAGAAAAAGATTCGTCCTCCAG
TGTTTCGGTTGGATGGGTCTTCTGCTGTGTCGATGAACTATCTTCGAGCT
TTAGGAAATGCCCTGCGACATGAGTTTGGGTTTGAAGGCGTGCCTATTCG
CGTGAAGAGACCATCTAGACGAAGGAGGCGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:984957..986690-

>Gvermi5292.t1 ID=Gvermi5292.t1|Name=Gvermi5292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1734bp|location=Sequence derived from alignment at ScGOVlb_24228:984957..986690- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTGCGCGCGCTGTCTGCGCTGCGCGCGCTGCACTCCGGCGCGCG
CGTCCCGCTGCCCGGTGCGGGCTCGCGGTCCGCGCCCGCGCCCGTCGTCT
ATGCGCACACACACCTTACCGCCGCACTGGTAGGCCGTCCCAATGTCGGC
AAGTCCACGCTGTTCAACCGCCTCGCCGCCGCCCTTCGCGGCCGCCAGAC
AGACGCCCAAGGCACCCCACCGCTGTCCTTCGTGCGCTCCGTCGTGCATC
CGCTGCCGGGCGTCACCCGCGACGCCCGGCGCGCCGCCGGCGCCGTCTCC
GACCTCTTGCTCAACATTGTCGACACCCCCGGCCTGGAGTGCGCTGTCTC
TGAGCGCGAACATGTCGACGCCGACGAGACCGCCCCCTTTGCTGACGGCA
CATCGCTGGTCGACGCCGTCGCCCACTGCGAGCACGCCGCCTACCGTCGC
GTCTACGCCCACATGAAGAACGCCACCATCGATGCTGTCAAACAAGCCAA
TCTTATTCTCTTCATTATTGACGCCTCGGTCGGCCTCACCTCCCTAGATC
ATGCGCACGCAAAGTGGCTGCACTCTTGTCTAACTCCGCAAAAGTCTATC
ATCCTGCTCGCAAACAAATGCGATGTAGCGCACTCAGACACCCACGCGCT
TGAGGCATACGAGCTCGGTTTCGGCCATCCTGTCCTCATTTCGGCCGAAC
AAGCTCTAGGTCTTGCTGATTTATACGAGCGCATCCGTCACATCTCCCCC
CCACCGCACACCGAGCAGAAACAGCAACTCATGCATTCCCCAGCGTCGCA
TGTAAGCGACCCAGAGGCTGAGATGCGTCAGTCCTTCGATGAAGATCTCG
TCATCACCACTTCTGCCCGCCTCCAAGAGCAGCCATTGCAGCAAGTAATC
GTGTCCATCATTGGTCGCCCAAACGTCGGCAAATCCACTCTGGTCAACAG
ACTTGTCGGTCAACAGCGTTCTATCGTCGGCGCCGCGGCTGGCGTCACCC
GTGACGCCGTGTTATGCCCGTGGAAACCGCAGTATGAGCGGCATGACTAC
CCACCCGTATGGTTAGTCGACACTCCTGGCGTCCGAGCGCAGCCCAAGGT
TAGTGCCGATGACCTCGAGAGGCTCATGGTCAGAGCTTCACTACAAGCCT
TAAGATCCAGTCATGTCGTAGTCGTTGTCATTGACGCAGTTGAATCGCTC
ACCCGCCAGGACGTCAAGTTGATGGACGTTGTCATTACTGAGGGGCGCGC
TGTCGTGCTTGTTGTCAACAAGATTGACAACCTGGACCCTGATGGCATTC
TTGATTGGAGAGCTCGTCTGCGCTATGACGTCGATAGCAAATTGGAGCAA
TTGAAAGGTGTTCCAGTCGTAGAGATGTCAGCGTTGAATTGGAATGACGA
TCCCAGTCAAGGAAAACGTCTATACGAAGCTATTCAGCGTGCTCGAGAAA
GATGGGAGAAGCGAGTGCCGACTTCAGCCTTGAATCGTTTTGTGAAAGCC
TTTAATGAGCGTATGTCAATCGGTGGTGGAACAAGGGGAGAGCGACGAAA
TCGCGTTGGAGTTACCAAGTTCATAACACAGAAAAAGATTCGTCCTCCAG
TGTTTCGGTTGGATGGGTCTTCTGCTGTGTCGATGAACTATCTTCGAGCT
TTAGGAAATGCCCTGCGACATGAGTTTGGGTTTGAAGGCGTGCCTATTCG
CGTGAAGAGACCATCTAGACGAAGGAGGCGTTAA
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