Gvermi5224.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5224.t1
Unique NameGvermi5224.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:707553..708980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3659.XP_004136541.1
PFAMsFAD-oxidase_C,FAD_binding_4
Max annot lvl35493|Streptophyta
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006081,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575
Evalue1.92e-159
EggNOG OGsCOG0277@1|root,KOG1231@2759|Eukaryota,37P3I@33090|Viridiplantae,3G9BY@35493|Streptophyta,4JE9S@91835|fabids
EC1.1.2.4
DescriptionD-lactate dehydrogenase cytochrome
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5224Gvermi5224Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 707553..708980 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5224.t1.start1Gvermi5224.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 707553..707555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5224.t1.CDS1Gvermi5224.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 707553..708980 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5224.t1.exon1Gvermi5224.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 707553..708980 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5224.t1.stop1Gvermi5224.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 708978..708980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5224.t1Gvermi5224.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 707553..708980 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5224.t1 ID=Gvermi5224.t1|Name=Gvermi5224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=476bp
MEHRDERAAFKPHLDVQYPGVYHELVRVLDEERVSLDEDELEGRGKEASG
YATPSNPQVVVYPESTEDVSAIMKIANKYKIPVVPYAAGTSLEGHTVAVR
GGICIDFQKMNKVLKVNVEDMDCVVQPGVQWMELNDYCRPYNMFLGVDPA
PGACIGGMCGTCCSGTNAVRYGTMKDQVLNLTVVLADGRVIKTGQRARKS
SAGYDLARIFVGSEGTLGIVTEATLRLRNVPEHMCMARVTFPSVHAACSS
VIEILQRGIQMGAIEIMDEEMVKAVNKYSGLELPLKPTILFKFTGTASHV
KEDIRVVKEITSKHTKEGYRFCQTKEESDELWGARKHSFWAAQTYVDNKE
IMATDVAVPISKLADCIMATKKELDESFLFAPIVGHVGDGNFHTVIVFDP
NDKKENDEAHRLNNLMVQRAIRMDGTCTGEHGVGIGKKEYLVPELGEGSV
KLMQTVKKALDPDNLLNPGKIVDIE*
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spliced messenger RNA

>Gvermi5224.t1 ID=Gvermi5224.t1|Name=Gvermi5224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_24228:707553..708980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACCGCGACGAGCGCGCCGCCTTCAAGCCGCACCTCGACGTGCA
GTACCCCGGCGTGTACCACGAGCTGGTGCGCGTGCTGGACGAGGAGCGCG
TCTCGCTGGACGAGGACGAGCTGGAGGGCCGCGGCAAGGAGGCGTCCGGC
TACGCCACGCCGTCCAACCCGCAGGTCGTCGTGTACCCCGAGTCCACCGA
GGACGTGTCCGCCATCATGAAGATTGCCAACAAGTACAAAATCCCCGTCG
TGCCGTACGCCGCCGGCACCAGCCTGGAGGGCCACACCGTCGCCGTGCGC
GGCGGCATCTGCATCGACTTCCAGAAGATGAACAAGGTGCTCAAGGTCAA
CGTGGAGGACATGGACTGCGTTGTGCAGCCCGGGGTGCAGTGGATGGAGC
TCAACGACTACTGCCGCCCGTACAACATGTTCCTCGGCGTGGACCCGGCG
CCGGGCGCGTGCATTGGCGGCATGTGCGGCACGTGTTGCTCGGGCACAAA
CGCCGTGCGGTACGGGACGATGAAGGACCAGGTGCTCAACCTGACGGTGG
TGCTGGCCGACGGGCGCGTGATCAAGACCGGGCAGCGCGCCAGGAAGTCG
TCGGCGGGCTACGACCTGGCGCGCATCTTCGTGGGCTCGGAGGGCACGCT
GGGCATTGTGACGGAGGCGACGCTGCGGCTGCGAAACGTGCCGGAGCACA
TGTGCATGGCGCGCGTGACGTTCCCGTCTGTGCATGCGGCGTGCTCGTCG
GTGATTGAGATCCTGCAGCGCGGCATCCAGATGGGCGCCATCGAGATCAT
GGACGAGGAGATGGTGAAGGCGGTGAACAAGTACTCGGGGCTGGAGCTGC
CGCTCAAGCCGACGATTTTGTTCAAATTCACGGGGACGGCGAGCCACGTG
AAGGAGGACATTCGGGTGGTGAAGGAGATCACGAGTAAGCACACCAAGGA
GGGGTACCGGTTCTGCCAGACAAAGGAGGAGAGCGACGAGCTGTGGGGCG
CGCGCAAGCACTCGTTCTGGGCGGCGCAGACGTACGTGGACAACAAGGAG
ATCATGGCGACGGACGTGGCGGTGCCGATTTCCAAACTGGCCGACTGCAT
CATGGCCACCAAGAAGGAGCTGGACGAGAGCTTTTTGTTTGCGCCGATCG
TGGGGCACGTGGGGGACGGCAACTTCCACACGGTCATCGTGTTTGACCCG
AACGACAAGAAGGAGAACGACGAGGCGCACCGGCTGAACAACCTGATGGT
TCAGCGGGCGATCCGCATGGACGGCACGTGCACGGGCGAGCACGGGGTTG
GGATCGGGAAGAAGGAGTACCTGGTGCCGGAGCTAGGGGAAGGATCCGTG
AAGCTGATGCAGACGGTGAAGAAGGCGCTGGATCCGGACAACCTGCTCAA
CCCGGGCAAGATAGTGGACATAGAATGA
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protein sequence of Gvermi5224.t1

>Gvermi5224.t1 ID=Gvermi5224.t1|Name=Gvermi5224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=476bp
MEHRDERAAFKPHLDVQYPGVYHELVRVLDEERVSLDEDELEGRGKEASG
YATPSNPQVVVYPESTEDVSAIMKIANKYKIPVVPYAAGTSLEGHTVAVR
GGICIDFQKMNKVLKVNVEDMDCVVQPGVQWMELNDYCRPYNMFLGVDPA
PGACIGGMCGTCCSGTNAVRYGTMKDQVLNLTVVLADGRVIKTGQRARKS
SAGYDLARIFVGSEGTLGIVTEATLRLRNVPEHMCMARVTFPSVHAACSS
VIEILQRGIQMGAIEIMDEEMVKAVNKYSGLELPLKPTILFKFTGTASHV
KEDIRVVKEITSKHTKEGYRFCQTKEESDELWGARKHSFWAAQTYVDNKE
IMATDVAVPISKLADCIMATKKELDESFLFAPIVGHVGDGNFHTVIVFDP
NDKKENDEAHRLNNLMVQRAIRMDGTCTGEHGVGIGKKEYLVPELGEGSV
KLMQTVKKALDPDNLLNPGKIVDIE*
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mRNA from alignment at ScGOVlb_24228:707553..708980+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5224.t1 ID=Gvermi5224.t1|Name=Gvermi5224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_24228:707553..708980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCACCGCGACGAGCGCGCCGCCTTCAAGCCGCACCTCGACGTGCA
GTACCCCGGCGTGTACCACGAGCTGGTGCGCGTGCTGGACGAGGAGCGCG
TCTCGCTGGACGAGGACGAGCTGGAGGGCCGCGGCAAGGAGGCGTCCGGC
TACGCCACGCCGTCCAACCCGCAGGTCGTCGTGTACCCCGAGTCCACCGA
GGACGTGTCCGCCATCATGAAGATTGCCAACAAGTACAAAATCCCCGTCG
TGCCGTACGCCGCCGGCACCAGCCTGGAGGGCCACACCGTCGCCGTGCGC
GGCGGCATCTGCATCGACTTCCAGAAGATGAACAAGGTGCTCAAGGTCAA
CGTGGAGGACATGGACTGCGTTGTGCAGCCCGGGGTGCAGTGGATGGAGC
TCAACGACTACTGCCGCCCGTACAACATGTTCCTCGGCGTGGACCCGGCG
CCGGGCGCGTGCATTGGCGGCATGTGCGGCACGTGTTGCTCGGGCACAAA
CGCCGTGCGGTACGGGACGATGAAGGACCAGGTGCTCAACCTGACGGTGG
TGCTGGCCGACGGGCGCGTGATCAAGACCGGGCAGCGCGCCAGGAAGTCG
TCGGCGGGCTACGACCTGGCGCGCATCTTCGTGGGCTCGGAGGGCACGCT
GGGCATTGTGACGGAGGCGACGCTGCGGCTGCGAAACGTGCCGGAGCACA
TGTGCATGGCGCGCGTGACGTTCCCGTCTGTGCATGCGGCGTGCTCGTCG
GTGATTGAGATCCTGCAGCGCGGCATCCAGATGGGCGCCATCGAGATCAT
GGACGAGGAGATGGTGAAGGCGGTGAACAAGTACTCGGGGCTGGAGCTGC
CGCTCAAGCCGACGATTTTGTTCAAATTCACGGGGACGGCGAGCCACGTG
AAGGAGGACATTCGGGTGGTGAAGGAGATCACGAGTAAGCACACCAAGGA
GGGGTACCGGTTCTGCCAGACAAAGGAGGAGAGCGACGAGCTGTGGGGCG
CGCGCAAGCACTCGTTCTGGGCGGCGCAGACGTACGTGGACAACAAGGAG
ATCATGGCGACGGACGTGGCGGTGCCGATTTCCAAACTGGCCGACTGCAT
CATGGCCACCAAGAAGGAGCTGGACGAGAGCTTTTTGTTTGCGCCGATCG
TGGGGCACGTGGGGGACGGCAACTTCCACACGGTCATCGTGTTTGACCCG
AACGACAAGAAGGAGAACGACGAGGCGCACCGGCTGAACAACCTGATGGT
TCAGCGGGCGATCCGCATGGACGGCACGTGCACGGGCGAGCACGGGGTTG
GGATCGGGAAGAAGGAGTACCTGGTGCCGGAGCTAGGGGAAGGATCCGTG
AAGCTGATGCAGACGGTGAAGAAGGCGCTGGATCCGGACAACCTGCTCAA
CCCGGGCAAGATAGTGGACATAGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:707553..708980+

>Gvermi5224.t1 ID=Gvermi5224.t1|Name=Gvermi5224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1428bp|location=Sequence derived from alignment at ScGOVlb_24228:707553..708980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCACCGCGACGAGCGCGCCGCCTTCAAGCCGCACCTCGACGTGCA
GTACCCCGGCGTGTACCACGAGCTGGTGCGCGTGCTGGACGAGGAGCGCG
TCTCGCTGGACGAGGACGAGCTGGAGGGCCGCGGCAAGGAGGCGTCCGGC
TACGCCACGCCGTCCAACCCGCAGGTCGTCGTGTACCCCGAGTCCACCGA
GGACGTGTCCGCCATCATGAAGATTGCCAACAAGTACAAAATCCCCGTCG
TGCCGTACGCCGCCGGCACCAGCCTGGAGGGCCACACCGTCGCCGTGCGC
GGCGGCATCTGCATCGACTTCCAGAAGATGAACAAGGTGCTCAAGGTCAA
CGTGGAGGACATGGACTGCGTTGTGCAGCCCGGGGTGCAGTGGATGGAGC
TCAACGACTACTGCCGCCCGTACAACATGTTCCTCGGCGTGGACCCGGCG
CCGGGCGCGTGCATTGGCGGCATGTGCGGCACGTGTTGCTCGGGCACAAA
CGCCGTGCGGTACGGGACGATGAAGGACCAGGTGCTCAACCTGACGGTGG
TGCTGGCCGACGGGCGCGTGATCAAGACCGGGCAGCGCGCCAGGAAGTCG
TCGGCGGGCTACGACCTGGCGCGCATCTTCGTGGGCTCGGAGGGCACGCT
GGGCATTGTGACGGAGGCGACGCTGCGGCTGCGAAACGTGCCGGAGCACA
TGTGCATGGCGCGCGTGACGTTCCCGTCTGTGCATGCGGCGTGCTCGTCG
GTGATTGAGATCCTGCAGCGCGGCATCCAGATGGGCGCCATCGAGATCAT
GGACGAGGAGATGGTGAAGGCGGTGAACAAGTACTCGGGGCTGGAGCTGC
CGCTCAAGCCGACGATTTTGTTCAAATTCACGGGGACGGCGAGCCACGTG
AAGGAGGACATTCGGGTGGTGAAGGAGATCACGAGTAAGCACACCAAGGA
GGGGTACCGGTTCTGCCAGACAAAGGAGGAGAGCGACGAGCTGTGGGGCG
CGCGCAAGCACTCGTTCTGGGCGGCGCAGACGTACGTGGACAACAAGGAG
ATCATGGCGACGGACGTGGCGGTGCCGATTTCCAAACTGGCCGACTGCAT
CATGGCCACCAAGAAGGAGCTGGACGAGAGCTTTTTGTTTGCGCCGATCG
TGGGGCACGTGGGGGACGGCAACTTCCACACGGTCATCGTGTTTGACCCG
AACGACAAGAAGGAGAACGACGAGGCGCACCGGCTGAACAACCTGATGGT
TCAGCGGGCGATCCGCATGGACGGCACGTGCACGGGCGAGCACGGGGTTG
GGATCGGGAAGAAGGAGTACCTGGTGCCGGAGCTAGGGGAAGGATCCGTG
AAGCTGATGCAGACGGTGAAGAAGGCGCTGGATCCGGACAACCTGCTCAA
CCCGGGCAAGATAGTGGACATAGAATGA
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