Gvermi5218.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5218.t1
Unique NameGvermi5218.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:648360..649565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009779180.1
PFAMsTubulin,Tubulin_C
Max annot lvl35493|Streptophyta
KEGG koko:K07374
KEGG Pathwayko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Evalue3.09e-102
EggNOG OGsCOG5023@1|root,KOG1376@2759|Eukaryota,37JG4@33090|Viridiplantae,3GBTX@35493|Streptophyta,44S1W@71274|asterids
DescriptionTubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5218Gvermi5218Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 648360..649565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1Gvermi5218.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 648360..649565 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1.stop1Gvermi5218.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 648360..648362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1.CDS1Gvermi5218.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 648360..648728 -
Gvermi5218.t1.CDS2Gvermi5218.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 648780..648940 -
Gvermi5218.t1.CDS3Gvermi5218.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 649001..649210 -
Gvermi5218.t1.CDS4Gvermi5218.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 649328..649565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1.exon1Gvermi5218.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 648360..648728 -
Gvermi5218.t1.exon2Gvermi5218.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 648780..648940 -
Gvermi5218.t1.exon3Gvermi5218.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 649001..649210 -
Gvermi5218.t1.exon4Gvermi5218.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 649328..649565 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1.intron1Gvermi5218.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 648729..648779 -
Gvermi5218.t1.intron2Gvermi5218.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 648941..649000 -
Gvermi5218.t1.intron3Gvermi5218.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 649211..649327 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5218.t1.start1Gvermi5218.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 649563..649565 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5218.t1 ID=Gvermi5218.t1|Name=Gvermi5218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=326bp
MAHGTIPDGTISKEKEKKGKSDSFSTLFYDTSVVKHVPHAVFLDLEPTVI
DEVIHGEYPKLYHPGRVITEKEDAANNYAPTSSDFGSLILDRISCDYGKK
SMLGFTVYTSLQVSTSFAEPYNSVKATHALLGHLGVGSVLDNEDIYHICL
MSSLTASLRFHGALNVDFNELQTNVVLYPRIHFMLSAYAPNVAKKKGHHE
ESSSNPCSGRHIARSLNSRGKDMFSRDVNSVVASIKTKCFIQFVQWSPTS
MKIGINSEQPILVNDDDLAESKRSVCSIAHCTAIAEGFARNTAKFDLMFA
KRAFVHWFVAECVNIRPLVYIATDL*
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spliced messenger RNA

>Gvermi5218.t1 ID=Gvermi5218.t1|Name=Gvermi5218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=978bp|location=Sequence derived from alignment at ScGOVlb_24228:648360..649565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCATGGCACCATTCCGGACGGAACCATTTCCAAAGAGAAGGAGAA
AAAGGGAAAAAGCGACTCTTTCTCCACTTTGTTTTATGACACCTCTGTTG
TAAAGCACGTTCCACATGCCGTCTTCCTTGACCTTGAACCCACCGTCATC
GACGAAGTTATTCATGGCGAGTACCCCAAGCTCTATCACCCGGGGCGGGT
CATCACCGAAAAGGAGGACGCCGCCAACAACTACGCTCCTACTTCATCTG
ATTTTGGCTCCCTGATTCTTGATCGCATTTCATGCGATTACGGCAAGAAG
TCCATGCTCGGATTCACTGTCTACACCTCTCTCCAGGTGTCTACCTCCTT
CGCTGAACCGTACAACTCTGTCAAAGCCACCCACGCCTTGCTGGGGCACC
TTGGTGTGGGAAGTGTTCTCGATAATGAGGATATTTACCACATCTGCCTG
ATGTCTTCTCTCACCGCCTCTCTCCGTTTCCATGGTGCTCTGAATGTGGA
CTTCAACGAGCTCCAGACCAACGTGGTGCTTTATCCTCGAATTCACTTCA
TGCTTTCTGCCTATGCGCCCAATGTCGCCAAGAAGAAGGGTCACCATGAG
GAATCCAGCTCCAACCCGTGCTCTGGTCGCCACATCGCTCGGTCTCTCAA
CTCTCGTGGAAAGGACATGTTTTCGAGAGATGTGAATTCGGTCGTTGCTT
CCATCAAGACGAAGTGCTTCATTCAGTTTGTCCAGTGGTCTCCCACCAGT
ATGAAGATTGGGATCAACTCCGAGCAGCCTATTCTAGTGAATGATGATGA
TTTGGCTGAGTCAAAGAGGTCTGTTTGCTCAATTGCACACTGTACAGCTA
TTGCAGAGGGGTTTGCTCGAAACACCGCCAAGTTCGATCTGATGTTCGCT
AAGAGAGCATTCGTACACTGGTTTGTTGCGGAGTGTGTCAATATTCGTCC
ATTGGTTTACATCGCCACTGATCTGTGA
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protein sequence of Gvermi5218.t1

>Gvermi5218.t1 ID=Gvermi5218.t1|Name=Gvermi5218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=326bp
MAHGTIPDGTISKEKEKKGKSDSFSTLFYDTSVVKHVPHAVFLDLEPTVI
DEVIHGEYPKLYHPGRVITEKEDAANNYAPTSSDFGSLILDRISCDYGKK
SMLGFTVYTSLQVSTSFAEPYNSVKATHALLGHLGVGSVLDNEDIYHICL
MSSLTASLRFHGALNVDFNELQTNVVLYPRIHFMLSAYAPNVAKKKGHHE
ESSSNPCSGRHIARSLNSRGKDMFSRDVNSVVASIKTKCFIQFVQWSPTS
MKIGINSEQPILVNDDDLAESKRSVCSIAHCTAIAEGFARNTAKFDLMFA
KRAFVHWFVAECVNIRPLVYIATDL*
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mRNA from alignment at ScGOVlb_24228:648360..649565-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5218.t1 ID=Gvermi5218.t1|Name=Gvermi5218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at ScGOVlb_24228:648360..649565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCATGGCACCATTCCGGACGGAACCATTTCCAAAGAGAAGGAGAA
AAAGGGAAAAAGCGACTCTTTCTCCACTTTGTTTTATGACACCTCTGTTG
TAAAGCACGTTCCACATGCCGTCTTCCTTGACCTTGAACCCACCGTCATC
GACGAAGTTATTCATGGCGAGTACCCCAAGCTCTATCACCCGGGGCGGGT
CATCACCGAAAAGGAGGACGCCGCCAACAACTACGCTCGTGGCCATTACA
CCACCGGGATGTAAATAGTGGACAACACCCTCGGCCGCATCCGTAAGCTA
GCAACCAACTGCGCTGTCCTTCAGGGTTTCCTTGTTTTCTCATCTGCTTG
TGGAGCTACTTCATCTGATTTTGGCTCCCTGATTCTTGATCGCATTTCAT
GCGATTACGGCAAGAAGTCCATGCTCGGATTCACTGTCTACACCTCTCTC
CAGGTGTCTACCTCCTTCGCTGAACCGTACAACTCTGTCAAAGCCACCCA
CGCCTTGCTGGGGCACCTTGGTGTGGGAAGTGTTCTCGATAATGAGGATA
TTTACCACATCTGCCGTCGTTCTTTGAGCATTGCTCGTCCTACGTAGTCC
AATCTTAACCGCCTCATCCTCCAAGTGATGTCTTCTCTCACCGCCTCTCT
CCGTTTCCATGGTGCTCTGAATGTGGACTTCAACGAGCTCCAGACCAACG
TGGTGCTTTATCCTCGAATTCACTTCATGCTTTCTGCCTATGCGCCCAAT
GTCGCCAAGAAGAAGGGTCACCATGAGGAATCCAGCGTGGCTGAGACTAC
ATCAGCTGTGTTCCAACCCAACATGGCATTCGCTTAGTCCAACCCGTGCT
CTGGTCGCCACATCGCTCGGTCTCTCAACTCTCGTGGAAAGGACATGTTT
TCGAGAGATGTGAATTCGGTCGTTGCTTCCATCAAGACGAAGTGCTTCAT
TCAGTTTGTCCAGTGGTCTCCCACCAGTATGAAGATTGGGATCAACTCCG
AGCAGCCTATTCTAGTGAATGATGATGATTTGGCTGAGTCAAAGAGGTCT
GTTTGCTCAATTGCACACTGTACAGCTATTGCAGAGGGGTTTGCTCGAAA
CACCGCCAAGTTCGATCTGATGTTCGCTAAGAGAGCATTCGTACACTGGT
TTGTTGCGGAGTGTGTCAATATTCGTCCATTGGTTTACATCGCCACTGAT
CTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:648360..649565-

>Gvermi5218.t1 ID=Gvermi5218.t1|Name=Gvermi5218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=978bp|location=Sequence derived from alignment at ScGOVlb_24228:648360..649565- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCATGGCACCATTCCGGACGGAACCATTTCCAAAGAGAAGGAGAA
AAAGGGAAAAAGCGACTCTTTCTCCACTTTGTTTTATGACACCTCTGTTG
TAAAGCACGTTCCACATGCCGTCTTCCTTGACCTTGAACCCACCGTCATC
GACGAAGTTATTCATGGCGAGTACCCCAAGCTCTATCACCCGGGGCGGGT
CATCACCGAAAAGGAGGACGCCGCCAACAACTACGCTCCTACTTCATCTG
ATTTTGGCTCCCTGATTCTTGATCGCATTTCATGCGATTACGGCAAGAAG
TCCATGCTCGGATTCACTGTCTACACCTCTCTCCAGGTGTCTACCTCCTT
CGCTGAACCGTACAACTCTGTCAAAGCCACCCACGCCTTGCTGGGGCACC
TTGGTGTGGGAAGTGTTCTCGATAATGAGGATATTTACCACATCTGCCTG
ATGTCTTCTCTCACCGCCTCTCTCCGTTTCCATGGTGCTCTGAATGTGGA
CTTCAACGAGCTCCAGACCAACGTGGTGCTTTATCCTCGAATTCACTTCA
TGCTTTCTGCCTATGCGCCCAATGTCGCCAAGAAGAAGGGTCACCATGAG
GAATCCAGCTCCAACCCGTGCTCTGGTCGCCACATCGCTCGGTCTCTCAA
CTCTCGTGGAAAGGACATGTTTTCGAGAGATGTGAATTCGGTCGTTGCTT
CCATCAAGACGAAGTGCTTCATTCAGTTTGTCCAGTGGTCTCCCACCAGT
ATGAAGATTGGGATCAACTCCGAGCAGCCTATTCTAGTGAATGATGATGA
TTTGGCTGAGTCAAAGAGGTCTGTTTGCTCAATTGCACACTGTACAGCTA
TTGCAGAGGGGTTTGCTCGAAACACCGCCAAGTTCGATCTGATGTTCGCT
AAGAGAGCATTCGTACACTGGTTTGTTGCGGAGTGTGTCAATATTCGTCC
ATTGGTTTACATCGCCACTGATCTGTGA
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