Gvermi5212.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5212.t1
Unique NameGvermi5212.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:618182..619465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705189.1
Preferred nameMTG2
PFAMsGTP1_OBG,MMR_HSR1
Max annot lvl2759|Eukaryota
KEGG koko:K03979,ko:K10277,ko:K15334
GOsGO:0000166,GO:0000313,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0098798,GO:0140053,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Evalue1.03e-86
EggNOG OGsCOG0536@1|root,KOG1489@2759|Eukaryota
EC1.14.11.27,2.1.1.202
DescriptionGTP-binding protein
COG categoryP
BRITEko00000,ko01000,ko03009,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5212Gvermi5212Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 618182..619465 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5212.t1.stop1Gvermi5212.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 618182..618184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5212.t1.CDS1Gvermi5212.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 618182..619465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5212.t1.exon1Gvermi5212.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 618182..619465 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5212.t1.start1Gvermi5212.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 619463..619465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5212.t1Gvermi5212.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 618182..619465 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5212.t1 ID=Gvermi5212.t1|Name=Gvermi5212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MCLRSSLVTLAQTKDGQHIVPVKKSCFGRITSPSVNFHRTSRAFSNRLRS
FVDRVVVTVEAGDGGSGCASFGRGPNQEIAPPDGGHGGKGGSVWLQASSG
CNSLRMSTYTLKAGNGSPGMSAKRQGRCGKDLIVNVPPGTIVRQLISPGK
ASSLELMADMEYSYDDLLHDQVRYPNSIVLCELNQHGQRAQIVKGGCGGR
GNVAFKSSRNRSPINSDLGERGEKKRLELELKTIADVGLVGFPNAGKSTF
LRAISSAKPKVASYPFTTLRPHIGVVNAHSVNPQDKPTFTVADIPGLIEG
AHENRGLGHEFLRHIERTTFLVYVLDLSSEEEVAVRHFDILQKELEMHES
GLSKRLSCIVANKMDAGESAVASLNRLLGHVGNQIAIFPTSAQFQTGIQD
VVKYIAGSLPCKASTRKERMSGSDLTF*
back to top

spliced messenger RNA

>Gvermi5212.t1 ID=Gvermi5212.t1|Name=Gvermi5212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24228:618182..619465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCTCAGATCGAGTTTAGTCACACTTGCGCAAACCAAAGATGGGCA
ACATATCGTCCCAGTCAAGAAATCTTGCTTTGGCCGCATTACGTCCCCAT
CAGTGAACTTCCATCGCACTTCACGCGCATTTTCAAATCGACTTCGCTCG
TTCGTGGATAGAGTCGTTGTTACAGTGGAGGCCGGCGACGGAGGGTCAGG
TTGCGCCTCATTCGGCAGAGGTCCAAACCAAGAAATCGCGCCCCCGGATG
GTGGGCATGGTGGCAAGGGTGGTTCGGTTTGGTTGCAGGCTTCATCTGGC
TGCAATTCATTGCGAATGTCCACTTACACTCTCAAAGCGGGGAATGGCAG
CCCTGGTATGTCTGCCAAGCGGCAAGGGCGTTGTGGTAAAGACCTCATTG
TCAATGTGCCTCCTGGAACCATTGTTCGCCAATTGATTTCTCCTGGTAAA
GCGTCTAGTCTCGAATTAATGGCCGACATGGAATATTCCTACGACGATTT
GTTGCACGACCAAGTGCGGTATCCAAATTCTATTGTTTTGTGTGAACTTA
ATCAACATGGACAACGTGCCCAAATTGTGAAGGGAGGGTGTGGTGGTCGT
GGAAATGTCGCTTTCAAGTCTTCCCGAAACAGATCACCGATAAACTCAGA
TCTTGGAGAAAGAGGAGAGAAGAAGCGATTGGAACTTGAACTGAAAACAA
TAGCAGATGTAGGGCTTGTAGGATTTCCAAATGCCGGAAAGAGCACATTT
CTTCGCGCAATATCGAGCGCGAAGCCAAAGGTTGCATCTTATCCGTTTAC
GACTCTTCGACCACACATAGGAGTTGTTAACGCACATTCCGTCAACCCAC
AGGACAAGCCCACATTTACTGTAGCTGATATTCCAGGTCTTATTGAGGGG
GCCCATGAGAATCGCGGGCTAGGACATGAGTTCTTGAGACATATTGAAAG
AACGACGTTCCTTGTGTATGTGCTTGACCTCTCTTCAGAAGAAGAAGTCG
CTGTGCGGCACTTTGACATTTTGCAGAAGGAACTGGAAATGCACGAATCA
GGACTGTCGAAGAGATTGAGTTGCATTGTGGCTAACAAAATGGATGCTGG
GGAGAGTGCTGTAGCTAGTCTCAACCGTCTGTTGGGACACGTTGGCAACC
AAATCGCGATATTCCCCACGTCTGCTCAGTTTCAAACTGGTATCCAAGAC
GTCGTGAAGTACATTGCAGGCTCTCTCCCATGCAAGGCTTCTACGCGAAA
AGAACGAATGTCAGGAAGTGATCTAACATTTTAA
back to top

protein sequence of Gvermi5212.t1

>Gvermi5212.t1 ID=Gvermi5212.t1|Name=Gvermi5212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MCLRSSLVTLAQTKDGQHIVPVKKSCFGRITSPSVNFHRTSRAFSNRLRS
FVDRVVVTVEAGDGGSGCASFGRGPNQEIAPPDGGHGGKGGSVWLQASSG
CNSLRMSTYTLKAGNGSPGMSAKRQGRCGKDLIVNVPPGTIVRQLISPGK
ASSLELMADMEYSYDDLLHDQVRYPNSIVLCELNQHGQRAQIVKGGCGGR
GNVAFKSSRNRSPINSDLGERGEKKRLELELKTIADVGLVGFPNAGKSTF
LRAISSAKPKVASYPFTTLRPHIGVVNAHSVNPQDKPTFTVADIPGLIEG
AHENRGLGHEFLRHIERTTFLVYVLDLSSEEEVAVRHFDILQKELEMHES
GLSKRLSCIVANKMDAGESAVASLNRLLGHVGNQIAIFPTSAQFQTGIQD
VVKYIAGSLPCKASTRKERMSGSDLTF*
back to top

mRNA from alignment at ScGOVlb_24228:618182..619465-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5212.t1 ID=Gvermi5212.t1|Name=Gvermi5212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24228:618182..619465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCTCAGATCGAGTTTAGTCACACTTGCGCAAACCAAAGATGGGCA
ACATATCGTCCCAGTCAAGAAATCTTGCTTTGGCCGCATTACGTCCCCAT
CAGTGAACTTCCATCGCACTTCACGCGCATTTTCAAATCGACTTCGCTCG
TTCGTGGATAGAGTCGTTGTTACAGTGGAGGCCGGCGACGGAGGGTCAGG
TTGCGCCTCATTCGGCAGAGGTCCAAACCAAGAAATCGCGCCCCCGGATG
GTGGGCATGGTGGCAAGGGTGGTTCGGTTTGGTTGCAGGCTTCATCTGGC
TGCAATTCATTGCGAATGTCCACTTACACTCTCAAAGCGGGGAATGGCAG
CCCTGGTATGTCTGCCAAGCGGCAAGGGCGTTGTGGTAAAGACCTCATTG
TCAATGTGCCTCCTGGAACCATTGTTCGCCAATTGATTTCTCCTGGTAAA
GCGTCTAGTCTCGAATTAATGGCCGACATGGAATATTCCTACGACGATTT
GTTGCACGACCAAGTGCGGTATCCAAATTCTATTGTTTTGTGTGAACTTA
ATCAACATGGACAACGTGCCCAAATTGTGAAGGGAGGGTGTGGTGGTCGT
GGAAATGTCGCTTTCAAGTCTTCCCGAAACAGATCACCGATAAACTCAGA
TCTTGGAGAAAGAGGAGAGAAGAAGCGATTGGAACTTGAACTGAAAACAA
TAGCAGATGTAGGGCTTGTAGGATTTCCAAATGCCGGAAAGAGCACATTT
CTTCGCGCAATATCGAGCGCGAAGCCAAAGGTTGCATCTTATCCGTTTAC
GACTCTTCGACCACACATAGGAGTTGTTAACGCACATTCCGTCAACCCAC
AGGACAAGCCCACATTTACTGTAGCTGATATTCCAGGTCTTATTGAGGGG
GCCCATGAGAATCGCGGGCTAGGACATGAGTTCTTGAGACATATTGAAAG
AACGACGTTCCTTGTGTATGTGCTTGACCTCTCTTCAGAAGAAGAAGTCG
CTGTGCGGCACTTTGACATTTTGCAGAAGGAACTGGAAATGCACGAATCA
GGACTGTCGAAGAGATTGAGTTGCATTGTGGCTAACAAAATGGATGCTGG
GGAGAGTGCTGTAGCTAGTCTCAACCGTCTGTTGGGACACGTTGGCAACC
AAATCGCGATATTCCCCACGTCTGCTCAGTTTCAAACTGGTATCCAAGAC
GTCGTGAAGTACATTGCAGGCTCTCTCCCATGCAAGGCTTCTACGCGAAA
AGAACGAATGTCAGGAAGTGATCTAACATTTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24228:618182..619465-

>Gvermi5212.t1 ID=Gvermi5212.t1|Name=Gvermi5212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24228:618182..619465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCTCAGATCGAGTTTAGTCACACTTGCGCAAACCAAAGATGGGCA
ACATATCGTCCCAGTCAAGAAATCTTGCTTTGGCCGCATTACGTCCCCAT
CAGTGAACTTCCATCGCACTTCACGCGCATTTTCAAATCGACTTCGCTCG
TTCGTGGATAGAGTCGTTGTTACAGTGGAGGCCGGCGACGGAGGGTCAGG
TTGCGCCTCATTCGGCAGAGGTCCAAACCAAGAAATCGCGCCCCCGGATG
GTGGGCATGGTGGCAAGGGTGGTTCGGTTTGGTTGCAGGCTTCATCTGGC
TGCAATTCATTGCGAATGTCCACTTACACTCTCAAAGCGGGGAATGGCAG
CCCTGGTATGTCTGCCAAGCGGCAAGGGCGTTGTGGTAAAGACCTCATTG
TCAATGTGCCTCCTGGAACCATTGTTCGCCAATTGATTTCTCCTGGTAAA
GCGTCTAGTCTCGAATTAATGGCCGACATGGAATATTCCTACGACGATTT
GTTGCACGACCAAGTGCGGTATCCAAATTCTATTGTTTTGTGTGAACTTA
ATCAACATGGACAACGTGCCCAAATTGTGAAGGGAGGGTGTGGTGGTCGT
GGAAATGTCGCTTTCAAGTCTTCCCGAAACAGATCACCGATAAACTCAGA
TCTTGGAGAAAGAGGAGAGAAGAAGCGATTGGAACTTGAACTGAAAACAA
TAGCAGATGTAGGGCTTGTAGGATTTCCAAATGCCGGAAAGAGCACATTT
CTTCGCGCAATATCGAGCGCGAAGCCAAAGGTTGCATCTTATCCGTTTAC
GACTCTTCGACCACACATAGGAGTTGTTAACGCACATTCCGTCAACCCAC
AGGACAAGCCCACATTTACTGTAGCTGATATTCCAGGTCTTATTGAGGGG
GCCCATGAGAATCGCGGGCTAGGACATGAGTTCTTGAGACATATTGAAAG
AACGACGTTCCTTGTGTATGTGCTTGACCTCTCTTCAGAAGAAGAAGTCG
CTGTGCGGCACTTTGACATTTTGCAGAAGGAACTGGAAATGCACGAATCA
GGACTGTCGAAGAGATTGAGTTGCATTGTGGCTAACAAAATGGATGCTGG
GGAGAGTGCTGTAGCTAGTCTCAACCGTCTGTTGGGACACGTTGGCAACC
AAATCGCGATATTCCCCACGTCTGCTCAGTTTCAAACTGGTATCCAAGAC
GTCGTGAAGTACATTGCAGGCTCTCTCCCATGCAAGGCTTCTACGCGAAA
AGAACGAATGTCAGGAAGTGATCTAACATTTTAA
back to top