Gvermi5180.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5180.t1
Unique NameGvermi5180.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:539493..540080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7955.ENSDARP00000020911
Preferred nameeif4e2
PFAMsIF4E
Max annot lvl33208|Metazoa
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
GOsGO:0000339,GO:0000340,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0006417,GO:0007553,GO:0007554,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0034248,GO:0034249,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:2000026,GO:2000112,GO:2000113
Evalue2.3e-40
EggNOG OGsCOG5053@1|root,KOG1669@2759|Eukaryota,38GD4@33154|Opisthokonta,3BGXI@33208|Metazoa,3CYQH@33213|Bilateria,48HPF@7711|Chordata,49EGY@7742|Vertebrata,4A58H@7898|Actinopterygii
DescriptionEukaryotic translation initiation factor 4E
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5180Gvermi5180Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 539493..540080 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5180.t1.stop1Gvermi5180.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 539493..539495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5180.t1.CDS1Gvermi5180.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 539493..540080 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5180.t1.exon1Gvermi5180.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 539493..540080 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5180.t1.start1Gvermi5180.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 540078..540080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5180.t1Gvermi5180.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 539493..540080 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5180.t1 ID=Gvermi5180.t1|Name=Gvermi5180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=196bp
MAATGKSWLAAAAAPVRTQPKGGHLLHRTYQFSYVHRSMDRKNEDYKNQI
RNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRG
GRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSVRTYENNLSIW
LKDANNKQLLVRVESIARRALNLEPKIVLRDWSFKAHNTDQSPSS*
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spliced messenger RNA

>Gvermi5180.t1 ID=Gvermi5180.t1|Name=Gvermi5180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=588bp|location=Sequence derived from alignment at ScGOVlb_24228:539493..540080- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCACAGGCAAAAGCTGGCTCGCCGCCGCCGCCGCGCCCGTTCG
CACCCAACCAAAAGGCGGCCACTTGCTTCATCGCACCTATCAATTCAGTT
ACGTTCATCGCTCAATGGATCGTAAAAATGAAGATTACAAGAATCAGATC
CGTAACATAGCTACTGTGGGAACCGTGGAAGAATTTTGGGCCGTCTACAC
TCATCTCAACCGTGTGAATAAACTTTCGCCCAACACTGACTATTTTCTGT
TTCAAAAGGGCGTGCAACCCATGTGGGAGGACGACGCTAACAAACGGGGA
GGCAGACTAACCATTCGTCTGCAAAAGGCCGCCAGTCCTCGCGCCTTCGA
GGATCTTTGCTTGGCGCTTATTGGCGAACAATTTGAAACTGATGACATTT
GTGGTATCGCCTGTTCTGTACGGACTTATGAGAACAATCTCAGTATATGG
CTGAAAGATGCGAACAACAAACAATTGCTAGTTCGAGTCGAATCCATAGC
GAGACGCGCGTTGAACCTAGAGCCCAAGATTGTTCTGCGCGATTGGTCCT
TCAAGGCGCACAATACCGATCAATCCCCCAGCTCGTAG
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protein sequence of Gvermi5180.t1

>Gvermi5180.t1 ID=Gvermi5180.t1|Name=Gvermi5180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=196bp
MAATGKSWLAAAAAPVRTQPKGGHLLHRTYQFSYVHRSMDRKNEDYKNQI
RNIATVGTVEEFWAVYTHLNRVNKLSPNTDYFLFQKGVQPMWEDDANKRG
GRLTIRLQKAASPRAFEDLCLALIGEQFETDDICGIACSVRTYENNLSIW
LKDANNKQLLVRVESIARRALNLEPKIVLRDWSFKAHNTDQSPSS*
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mRNA from alignment at ScGOVlb_24228:539493..540080-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5180.t1 ID=Gvermi5180.t1|Name=Gvermi5180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=588bp|location=Sequence derived from alignment at ScGOVlb_24228:539493..540080- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCACAGGCAAAAGCTGGCTCGCCGCCGCCGCCGCGCCCGTTCG
CACCCAACCAAAAGGCGGCCACTTGCTTCATCGCACCTATCAATTCAGTT
ACGTTCATCGCTCAATGGATCGTAAAAATGAAGATTACAAGAATCAGATC
CGTAACATAGCTACTGTGGGAACCGTGGAAGAATTTTGGGCCGTCTACAC
TCATCTCAACCGTGTGAATAAACTTTCGCCCAACACTGACTATTTTCTGT
TTCAAAAGGGCGTGCAACCCATGTGGGAGGACGACGCTAACAAACGGGGA
GGCAGACTAACCATTCGTCTGCAAAAGGCCGCCAGTCCTCGCGCCTTCGA
GGATCTTTGCTTGGCGCTTATTGGCGAACAATTTGAAACTGATGACATTT
GTGGTATCGCCTGTTCTGTACGGACTTATGAGAACAATCTCAGTATATGG
CTGAAAGATGCGAACAACAAACAATTGCTAGTTCGAGTCGAATCCATAGC
GAGACGCGCGTTGAACCTAGAGCCCAAGATTGTTCTGCGCGATTGGTCCT
TCAAGGCGCACAATACCGATCAATCCCCCAGCTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:539493..540080-

>Gvermi5180.t1 ID=Gvermi5180.t1|Name=Gvermi5180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=588bp|location=Sequence derived from alignment at ScGOVlb_24228:539493..540080- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCACAGGCAAAAGCTGGCTCGCCGCCGCCGCCGCGCCCGTTCG
CACCCAACCAAAAGGCGGCCACTTGCTTCATCGCACCTATCAATTCAGTT
ACGTTCATCGCTCAATGGATCGTAAAAATGAAGATTACAAGAATCAGATC
CGTAACATAGCTACTGTGGGAACCGTGGAAGAATTTTGGGCCGTCTACAC
TCATCTCAACCGTGTGAATAAACTTTCGCCCAACACTGACTATTTTCTGT
TTCAAAAGGGCGTGCAACCCATGTGGGAGGACGACGCTAACAAACGGGGA
GGCAGACTAACCATTCGTCTGCAAAAGGCCGCCAGTCCTCGCGCCTTCGA
GGATCTTTGCTTGGCGCTTATTGGCGAACAATTTGAAACTGATGACATTT
GTGGTATCGCCTGTTCTGTACGGACTTATGAGAACAATCTCAGTATATGG
CTGAAAGATGCGAACAACAAACAATTGCTAGTTCGAGTCGAATCCATAGC
GAGACGCGCGTTGAACCTAGAGCCCAAGATTGTTCTGCGCGATTGGTCCT
TCAAGGCGCACAATACCGATCAATCCCCCAGCTCGTAG
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