Gvermi5174.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5174.t1
Unique NameGvermi5174.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length676
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:510716..512743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP60794
Preferred nameNCAPH
PFAMsCnd2
Max annot lvl33208|Metazoa
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K06676
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04111,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04111
KEGG ModuleM00129
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001655,GO:0001671,GO:0001700,GO:0002009,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0007399,GO:0007422,GO:0007424,GO:0007439,GO:0007442,GO:0007443,GO:0008047,GO:0008150,GO:0008152,GO:0008258,GO:0009060,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010605,GO:0010629,GO:0010911,GO:0010912,GO:0015980,GO:0016043,GO:0016321,GO:0016458,GO:0016999,GO:0017144,GO:0019222,GO:0019752,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032991,GO:0035239,GO:0035295,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043462,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044703,GO:0044815,GO:0045132,GO:0045333,GO:0048285,GO:0048513,GO:0048519,GO:0048546,GO:0048565,GO:0048567,GO:0048598,GO:0048609,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051336,GO:0051345,GO:0051704,GO:0055114,GO:0055123,GO:0060255,GO:0060429,GO:0060541,GO:0060562,GO:0060589,GO:0060590,GO:0061326,GO:0061333,GO:0061525,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0072350,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2000371,GO:2000373
Evalue9.07e-67
EggNOG OGsCOG5229@1|root,KOG2328@2759|Eukaryota,38HEG@33154|Opisthokonta,3BF8V@33208|Metazoa
EC3.1.1.17
DescriptionDNA topoisomerase (ATP-hydrolyzing) activator activity
COG categoryBD
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5174Gvermi5174Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 510716..512743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5174.t1.stop1Gvermi5174.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 510716..510718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5174.t1.CDS1Gvermi5174.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 510716..512743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5174.t1.exon1Gvermi5174.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 510716..512743 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5174.t1.start1Gvermi5174.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 512741..512743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5174.t1Gvermi5174.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 510716..512743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=676bp
MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRSEASGNQVARTVCFEDE
TAQLPVDGDTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFQVLGGLSRSG
NQDGSDPGSEPVEGDNQGDTRKQRRHGRRAGNVTLETNLANITSQRLETD
LAVDPLFHKMSAAFDEGGASGMLMNNLPIGPKSQIIFDSGETADYLVFMD
DEDEGDGDADSEHNTYDISKWLPEKQITENDTICGPFLRYFQSKQVGDSA
RDKCNSSADQTERPDRNSFSNEDSDILEHNFGYDDNDLQDNSDIGMLPEN
DIPFDVSQGNDCDDVTLAMNSGNHSEQLLETGASSSTAVRRGSVDLVEAG
VTLLDNPDYSYFDTNALVGWAGPAHWTFRALNSSASGGDASQKHAKKRTK
KPRDTKAMLLDFSSEAPEIDFAEKFAPASRESLIQISASVRNGFSEKKVT
LPEDHHLSIQALCSLFLRPNTYIKPNGKLESNIKEESDATEAQNWYDFDN
PCDKENFVGGDPNILEDFSQEPFEDVFETDGDVGVELLAEPTRVEKIDIN
YAKVAKKVDVRKLKAGIWTKLCGDKHDEDTHHEEPEETLHDSSGGNSEPL
PDVRTGATQRLQTIVSSIPSMLPPTSLPDISLPYVFICLLHLANEKQLRI
TQAEDNPLTDLVVTSEGQGDEGAVS*
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spliced messenger RNA

>Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG
AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA
GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA
ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC
GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT
CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA
AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA
AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA
CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT
CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG
CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC
AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT
GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA
TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT
GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT
CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA
TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG
ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT
GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT
AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA
GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC
GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT
GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT
CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG
AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC
TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA
TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA
TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT
CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA
AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT
CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA
TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG
GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC
TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT
CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG
AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG
CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG
CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT
ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA
ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG
ACAAGGCGATGAGGGTGCTGTATCATGA
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protein sequence of Gvermi5174.t1

>Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=676bp
MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRSEASGNQVARTVCFEDE
TAQLPVDGDTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFQVLGGLSRSG
NQDGSDPGSEPVEGDNQGDTRKQRRHGRRAGNVTLETNLANITSQRLETD
LAVDPLFHKMSAAFDEGGASGMLMNNLPIGPKSQIIFDSGETADYLVFMD
DEDEGDGDADSEHNTYDISKWLPEKQITENDTICGPFLRYFQSKQVGDSA
RDKCNSSADQTERPDRNSFSNEDSDILEHNFGYDDNDLQDNSDIGMLPEN
DIPFDVSQGNDCDDVTLAMNSGNHSEQLLETGASSSTAVRRGSVDLVEAG
VTLLDNPDYSYFDTNALVGWAGPAHWTFRALNSSASGGDASQKHAKKRTK
KPRDTKAMLLDFSSEAPEIDFAEKFAPASRESLIQISASVRNGFSEKKVT
LPEDHHLSIQALCSLFLRPNTYIKPNGKLESNIKEESDATEAQNWYDFDN
PCDKENFVGGDPNILEDFSQEPFEDVFETDGDVGVELLAEPTRVEKIDIN
YAKVAKKVDVRKLKAGIWTKLCGDKHDEDTHHEEPEETLHDSSGGNSEPL
PDVRTGATQRLQTIVSSIPSMLPPTSLPDISLPYVFICLLHLANEKQLRI
TQAEDNPLTDLVVTSEGQGDEGAVS*
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mRNA from alignment at ScGOVlb_24228:510716..512743-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG ACAAGGCGATGAGGGTGCTGTATCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:510716..512743-

>Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG
AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA
GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA
ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC
GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT
CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA
AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA
AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA
CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT
CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG
CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC
AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT
GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA
TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT
GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT
CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA
TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG
ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT
GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT
AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA
GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC
GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT
GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT
CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG
AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC
TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA
TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA
TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT
CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA
AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT
CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA
TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG
GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC
TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT
CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG
AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG
CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG
CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT
ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA
ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG
ACAAGGCGATGAGGGTGCTGTATCATGA
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