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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 10228.TriadP60794 |
| Preferred name | NCAPH |
| PFAMs | Cnd2 |
| Max annot lvl | 33208|Metazoa |
| KEGG rclass | RC00537,RC00983 |
| KEGG ko | ko:K01053,ko:K06676 |
| KEGG Reaction | R01519,R02933,R03751 |
| KEGG Pathway | ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04111,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04111 |
| KEGG Module | M00129 |
| GOs | GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001655,GO:0001671,GO:0001700,GO:0002009,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0007399,GO:0007422,GO:0007424,GO:0007439,GO:0007442,GO:0007443,GO:0008047,GO:0008150,GO:0008152,GO:0008258,GO:0009060,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010605,GO:0010629,GO:0010911,GO:0010912,GO:0015980,GO:0016043,GO:0016321,GO:0016458,GO:0016999,GO:0017144,GO:0019222,GO:0019752,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032991,GO:0035239,GO:0035295,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043462,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044703,GO:0044815,GO:0045132,GO:0045333,GO:0048285,GO:0048513,GO:0048519,GO:0048546,GO:0048565,GO:0048567,GO:0048598,GO:0048609,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051336,GO:0051345,GO:0051704,GO:0055114,GO:0055123,GO:0060255,GO:0060429,GO:0060541,GO:0060562,GO:0060589,GO:0060590,GO:0061326,GO:0061333,GO:0061525,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0072350,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2000371,GO:2000373 |
| Evalue | 9.07e-67 |
| EggNOG OGs | COG5229@1|root,KOG2328@2759|Eukaryota,38HEG@33154|Opisthokonta,3BF8V@33208|Metazoa |
| EC | 3.1.1.17 |
| Description | DNA topoisomerase (ATP-hydrolyzing) activator activity |
| COG category | BD |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03036,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=676bp MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRSEASGNQVARTVCFEDE TAQLPVDGDTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFQVLGGLSRSG NQDGSDPGSEPVEGDNQGDTRKQRRHGRRAGNVTLETNLANITSQRLETD LAVDPLFHKMSAAFDEGGASGMLMNNLPIGPKSQIIFDSGETADYLVFMD DEDEGDGDADSEHNTYDISKWLPEKQITENDTICGPFLRYFQSKQVGDSA RDKCNSSADQTERPDRNSFSNEDSDILEHNFGYDDNDLQDNSDIGMLPEN DIPFDVSQGNDCDDVTLAMNSGNHSEQLLETGASSSTAVRRGSVDLVEAG VTLLDNPDYSYFDTNALVGWAGPAHWTFRALNSSASGGDASQKHAKKRTK KPRDTKAMLLDFSSEAPEIDFAEKFAPASRESLIQISASVRNGFSEKKVT LPEDHHLSIQALCSLFLRPNTYIKPNGKLESNIKEESDATEAQNWYDFDN PCDKENFVGGDPNILEDFSQEPFEDVFETDGDVGVELLAEPTRVEKIDIN YAKVAKKVDVRKLKAGIWTKLCGDKHDEDTHHEEPEETLHDSSGGNSEPL PDVRTGATQRLQTIVSSIPSMLPPTSLPDISLPYVFICLLHLANEKQLRI TQAEDNPLTDLVVTSEGQGDEGAVS* back to topspliced messenger RNA >Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG ACAAGGCGATGAGGGTGCTGTATCATGA back to topprotein sequence of Gvermi5174.t1 >Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=676bp
MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRSEASGNQVARTVCFEDE TAQLPVDGDTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFQVLGGLSRSG NQDGSDPGSEPVEGDNQGDTRKQRRHGRRAGNVTLETNLANITSQRLETD LAVDPLFHKMSAAFDEGGASGMLMNNLPIGPKSQIIFDSGETADYLVFMD DEDEGDGDADSEHNTYDISKWLPEKQITENDTICGPFLRYFQSKQVGDSA RDKCNSSADQTERPDRNSFSNEDSDILEHNFGYDDNDLQDNSDIGMLPEN DIPFDVSQGNDCDDVTLAMNSGNHSEQLLETGASSSTAVRRGSVDLVEAG VTLLDNPDYSYFDTNALVGWAGPAHWTFRALNSSASGGDASQKHAKKRTK KPRDTKAMLLDFSSEAPEIDFAEKFAPASRESLIQISASVRNGFSEKKVT LPEDHHLSIQALCSLFLRPNTYIKPNGKLESNIKEESDATEAQNWYDFDN PCDKENFVGGDPNILEDFSQEPFEDVFETDGDVGVELLAEPTRVEKIDIN YAKVAKKVDVRKLKAGIWTKLCGDKHDEDTHHEEPEETLHDSSGGNSEPL PDVRTGATQRLQTIVSSIPSMLPPTSLPDISLPYVFICLLHLANEKQLRI TQAEDNPLTDLVVTSEGQGDEGAVS* back to topmRNA from alignment at ScGOVlb_24228:510716..512743- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG
AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA
GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA
ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC
GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT
CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA
AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA
AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA
CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT
CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG
CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC
AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT
GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA
TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT
GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT
CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA
TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG
ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT
GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT
AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA
GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC
GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT
GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT
CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG
AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC
TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA
TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA
TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT
CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA
AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT
CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA
TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG
GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC
TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT
CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG
AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG
CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG
CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT
ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA
ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG
ACAAGGCGATGAGGGTGCTGTATCATGA back to topCoding sequence (CDS) from alignment at ScGOVlb_24228:510716..512743- >Gvermi5174.t1 ID=Gvermi5174.t1|Name=Gvermi5174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2028bp|location=Sequence derived from alignment at ScGOVlb_24228:510716..512743- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTACTCTGCAACCATAAAGCTGTGTCAAGACAATAAAATCAATGCGAG AAACACATGGACTTTAAATCTTATTGATTACATGTCAATGCTGGTGAGGA GTGAAGCGTCTGGCAACCAGGTCGCAAGGACAGTGTGTTTTGAAGACGAA ACCGCTCAGCTGCCCGTGGATGGGGATACAGGGACTAACTTTCAACTGGC GGGCGTAACATTGGATGCCGGAGTCAAGATTTACTGCTCTCGAGTAGACT CCGTTCACACGAACGCTTTCCAGGTATTAGGCGGCTTATCACGGAGCGGA AACCAGGATGGCTCAGACCCAGGTTCCGAGCCAGTGGAAGGAGACAACCA AGGAGACACCAGAAAACAGCGACGTCATGGGCGAAGGGCGGGCAATGTGA CCTTGGAGACGAACTTGGCAAACATTACGTCTCAAAGACTCGAAACAGAT CTTGCTGTAGACCCACTGTTTCATAAAATGTCTGCTGCTTTCGATGAAGG CGGAGCTTCAGGGATGCTCATGAATAATTTGCCTATTGGACCCAAATCTC AGATCATTTTCGACAGCGGGGAAACTGCAGATTATCTTGTATTCATGGAT GATGAAGATGAAGGGGATGGGGATGCAGACTCAGAGCACAATACTTACGA TATCTCAAAGTGGTTGCCTGAAAAACAAATCACAGAGAATGACACGATCT GCGGGCCATTTCTTCGTTATTTTCAGTCAAAGCAGGTCGGCGATTCCGCT CGCGACAAGTGCAACTCTTCCGCTGACCAGACCGAACGTCCGGATCGAAA TAGTTTCAGCAATGAGGACTCTGATATTCTGGAGCACAACTTTGGCTATG ATGACAATGATTTGCAAGACAATTCTGATATTGGAATGCTGCCAGAGAAT GACATACCCTTCGATGTTTCCCAAGGAAATGACTGTGATGATGTCACACT AGCAATGAATTCAGGTAATCATTCTGAGCAGCTTCTTGAAACTGGTGCAA GTAGTTCTACAGCGGTCCGACGCGGGAGCGTAGACCTTGTCGAGGCTGGC GTGACGCTTTTGGATAATCCAGATTATTCATACTTTGATACAAATGCGTT GGTTGGATGGGCAGGCCCAGCGCATTGGACCTTTAGGGCACTGAATTCAT CCGCATCCGGAGGTGACGCTTCCCAGAAGCATGCAAAAAAGAGAACCAAG AAGCCACGAGATACAAAAGCCATGCTGTTAGACTTCTCATCAGAAGCCCC TGAGATCGACTTTGCAGAAAAGTTTGCCCCTGCGTCAAGGGAGTCACTGA TTCAGATATCCGCTTCTGTGCGAAACGGATTTTCGGAAAAGAAGGTGACA TTACCAGAAGATCATCATCTGTCCATTCAGGCTCTTTGCTCTCTGTTCCT CAGACCTAACACATACATCAAGCCCAACGGCAAATTGGAGTCTAACATCA AGGAAGAATCTGATGCAACCGAAGCACAAAACTGGTATGACTTTGACAAT CCGTGTGACAAGGAGAACTTTGTGGGTGGCGATCCAAATATTTTAGAAGA TTTCTCCCAAGAACCTTTCGAAGACGTCTTCGAAACGGACGGTGATGTTG GTGTGGAACTTCTCGCTGAGCCTACTCGCGTGGAAAAAATAGACATCAAC TACGCAAAGGTGGCAAAGAAAGTAGACGTCCGAAAACTGAAGGCCGGGAT CTGGACAAAGCTGTGCGGAGACAAGCATGACGAAGATACGCATCATGAAG AGCCCGAGGAAACTCTACACGACTCGTCCGGGGGAAACTCGGAGCCGTTG CCCGATGTGAGAACCGGTGCTACACAGCGACTTCAAACAATAGTTTCTAG CATCCCCTCGATGCTTCCGCCAACCTCCCTACCAGATATATCACTTCCTT ATGTGTTTATTTGCTTACTACATCTCGCAAACGAAAAACAGCTCAGAATA ACGCAGGCGGAGGACAACCCTTTGACGGATCTCGTGGTCACATCGGAAGG ACAAGGCGATGAGGGTGCTGTATCATGA back to top
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