Gvermi5153.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5153.t1
Unique Name	Gvermi5153.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:461246..462268 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_024_00121.1
PFAMs	JAB
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09613
GOs	GO:0000003,GO:0000338,GO:0003002,GO:0003006,GO:0006109,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009908,GO:0009987,GO:0010033,GO:0010093,GO:0010099,GO:0010100,GO:0010387,GO:0010389,GO:0010564,GO:0010565,GO:0010604,GO:0010971,GO:0016043,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0030656,GO:0031323,GO:0031326,GO:0031347,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0042176,GO:0042221,GO:0043170,GO:0043255,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045732,GO:0045787,GO:0045931,GO:0048367,GO:0048437,GO:0048444,GO:0048449,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051193,GO:0051196,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051726,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090068,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0090701,GO:0099402,GO:1901564,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1905392,GO:1905393,GO:2000026,GO:2000030,GO:2000082
Evalue	1.25e-127
EggNOG OGs	COG1310@1\|root,KOG1554@2759\|Eukaryota,37J43@33090\|Viridiplantae,3GF7N@35493\|Streptophyta
Description	COP9 signalosome complex subunit
COG category	OT
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5153	Gvermi5153	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 461246..462268 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5153.t1.start1	Gvermi5153.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 461246..461248 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5153.t1.CDS1	Gvermi5153.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 461246..462268 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5153.t1.exon1	Gvermi5153.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 461246..462268 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5153.t1.stop1	Gvermi5153.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 462266..462268 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5153.t1	Gvermi5153.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 461246..462268 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:461246..462268+
coding sequence from alignment at ScGOVlb_24228:461246..462268+

mRNA sequence

>Gvermi5153.t1 ID=Gvermi5153.t1|Name=Gvermi5153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=341bp
MNSADARRAFEVENDITRTTAQDDARYFYDDEEQAQLREKKPWSQDPNWF
KDVYISAVALIKMAMHARSGGAIEVMGSMQGKVCDRAFVVMDVFPLPVEG
TETRVNAGQAATEFLVQYSTECNKVVRRENIIGWYHSHPGYGCWLSGIDV
QTQSTHQQYEDPFLAIVVDPVRTISAGKVDLGAFRTYPLQYKPPTEGVNE
YQTIPLNKIEDFGVHCNNYYPLEVSYFKSSLDATLLDLLWNKYWARALST
SPLVQSKDYVVQQLTDISNKVKQAEKQLEKGNPHARSGYYLSEKKSNPGK
GNGQFDQIGKDAQKCCSEHVQSIMSMYIKNAMFSPSHGQN*

spliced messenger RNA

>Gvermi5153.t1 ID=Gvermi5153.t1|Name=Gvermi5153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_24228:461246..462268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTGCGGATGCTCGACGCGCATTTGAAGTGGAGAACGATATTAC
GCGCACAACAGCACAAGACGACGCCAGGTATTTTTACGATGACGAAGAAC
AGGCGCAGCTGCGAGAAAAGAAGCCATGGTCCCAAGACCCAAACTGGTTC
AAAGATGTGTACATATCTGCAGTTGCCCTGATTAAAATGGCCATGCACGC
ACGCTCGGGCGGTGCGATCGAGGTAATGGGTTCTATGCAGGGCAAGGTAT
GCGACAGAGCCTTTGTCGTGATGGACGTTTTTCCACTTCCTGTGGAAGGA
ACGGAAACAAGAGTGAACGCCGGTCAAGCTGCAACAGAATTCCTTGTGCA
GTACAGCACGGAATGTAACAAGGTCGTAAGACGAGAAAACATCATCGGAT
GGTACCATTCTCATCCCGGCTACGGCTGTTGGCTAAGCGGGATAGATGTG
CAGACGCAAAGTACTCATCAACAATACGAAGACCCTTTTCTCGCGATAGT
TGTGGACCCAGTGCGAACAATTTCCGCCGGGAAGGTTGACCTCGGTGCGT
TTCGCACCTACCCTCTCCAGTACAAACCACCTACAGAAGGTGTAAATGAG
TATCAAACAATCCCCCTCAACAAGATTGAGGATTTTGGTGTGCATTGTAA
CAACTACTATCCCCTTGAGGTTTCGTATTTTAAGAGTAGTTTGGACGCCA
CACTTTTAGATCTCTTATGGAACAAATACTGGGCGAGAGCTTTGTCAACT
TCCCCGTTGGTGCAAAGCAAGGATTATGTTGTTCAGCAGCTAACTGACAT
ATCTAACAAAGTAAAGCAGGCAGAAAAACAGTTAGAGAAGGGTAACCCGC
ATGCACGCAGTGGTTATTACTTATCAGAAAAGAAGTCAAACCCTGGAAAA
GGAAACGGTCAATTCGATCAGATTGGAAAAGATGCACAGAAATGTTGCAG
TGAGCATGTGCAGTCTATCATGTCTATGTACATAAAGAACGCGATGTTTA
GTCCTTCACATGGTCAAAACTGA

protein sequence of Gvermi5153.t1

>Gvermi5153.t1 ID=Gvermi5153.t1|Name=Gvermi5153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=341bp
MNSADARRAFEVENDITRTTAQDDARYFYDDEEQAQLREKKPWSQDPNWF
KDVYISAVALIKMAMHARSGGAIEVMGSMQGKVCDRAFVVMDVFPLPVEG
TETRVNAGQAATEFLVQYSTECNKVVRRENIIGWYHSHPGYGCWLSGIDV
QTQSTHQQYEDPFLAIVVDPVRTISAGKVDLGAFRTYPLQYKPPTEGVNE
YQTIPLNKIEDFGVHCNNYYPLEVSYFKSSLDATLLDLLWNKYWARALST
SPLVQSKDYVVQQLTDISNKVKQAEKQLEKGNPHARSGYYLSEKKSNPGK
GNGQFDQIGKDAQKCCSEHVQSIMSMYIKNAMFSPSHGQN*

mRNA from alignment at ScGOVlb_24228:461246..462268+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5153.t1 ID=Gvermi5153.t1|Name=Gvermi5153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_24228:461246..462268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTGCGGATGCTCGACGCGCATTTGAAGTGGAGAACGATATTAC
GCGCACAACAGCACAAGACGACGCCAGGTATTTTTACGATGACGAAGAAC
AGGCGCAGCTGCGAGAAAAGAAGCCATGGTCCCAAGACCCAAACTGGTTC
AAAGATGTGTACATATCTGCAGTTGCCCTGATTAAAATGGCCATGCACGC
ACGCTCGGGCGGTGCGATCGAGGTAATGGGTTCTATGCAGGGCAAGGTAT
GCGACAGAGCCTTTGTCGTGATGGACGTTTTTCCACTTCCTGTGGAAGGA
ACGGAAACAAGAGTGAACGCCGGTCAAGCTGCAACAGAATTCCTTGTGCA
GTACAGCACGGAATGTAACAAGGTCGTAAGACGAGAAAACATCATCGGAT
GGTACCATTCTCATCCCGGCTACGGCTGTTGGCTAAGCGGGATAGATGTG
CAGACGCAAAGTACTCATCAACAATACGAAGACCCTTTTCTCGCGATAGT
TGTGGACCCAGTGCGAACAATTTCCGCCGGGAAGGTTGACCTCGGTGCGT
TTCGCACCTACCCTCTCCAGTACAAACCACCTACAGAAGGTGTAAATGAG
TATCAAACAATCCCCCTCAACAAGATTGAGGATTTTGGTGTGCATTGTAA
CAACTACTATCCCCTTGAGGTTTCGTATTTTAAGAGTAGTTTGGACGCCA
CACTTTTAGATCTCTTATGGAACAAATACTGGGCGAGAGCTTTGTCAACT
TCCCCGTTGGTGCAAAGCAAGGATTATGTTGTTCAGCAGCTAACTGACAT
ATCTAACAAAGTAAAGCAGGCAGAAAAACAGTTAGAGAAGGGTAACCCGC
ATGCACGCAGTGGTTATTACTTATCAGAAAAGAAGTCAAACCCTGGAAAA
GGAAACGGTCAATTCGATCAGATTGGAAAAGATGCACAGAAATGTTGCAG
TGAGCATGTGCAGTCTATCATGTCTATGTACATAAAGAACGCGATGTTTA
GTCCTTCACATGGTCAAAACTGA

Coding sequence (CDS) from alignment at ScGOVlb_24228:461246..462268+

>Gvermi5153.t1 ID=Gvermi5153.t1|Name=Gvermi5153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1023bp|location=Sequence derived from alignment at ScGOVlb_24228:461246..462268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTGCGGATGCTCGACGCGCATTTGAAGTGGAGAACGATATTAC
GCGCACAACAGCACAAGACGACGCCAGGTATTTTTACGATGACGAAGAAC
AGGCGCAGCTGCGAGAAAAGAAGCCATGGTCCCAAGACCCAAACTGGTTC
AAAGATGTGTACATATCTGCAGTTGCCCTGATTAAAATGGCCATGCACGC
ACGCTCGGGCGGTGCGATCGAGGTAATGGGTTCTATGCAGGGCAAGGTAT
GCGACAGAGCCTTTGTCGTGATGGACGTTTTTCCACTTCCTGTGGAAGGA
ACGGAAACAAGAGTGAACGCCGGTCAAGCTGCAACAGAATTCCTTGTGCA
GTACAGCACGGAATGTAACAAGGTCGTAAGACGAGAAAACATCATCGGAT
GGTACCATTCTCATCCCGGCTACGGCTGTTGGCTAAGCGGGATAGATGTG
CAGACGCAAAGTACTCATCAACAATACGAAGACCCTTTTCTCGCGATAGT
TGTGGACCCAGTGCGAACAATTTCCGCCGGGAAGGTTGACCTCGGTGCGT
TTCGCACCTACCCTCTCCAGTACAAACCACCTACAGAAGGTGTAAATGAG
TATCAAACAATCCCCCTCAACAAGATTGAGGATTTTGGTGTGCATTGTAA
CAACTACTATCCCCTTGAGGTTTCGTATTTTAAGAGTAGTTTGGACGCCA
CACTTTTAGATCTCTTATGGAACAAATACTGGGCGAGAGCTTTGTCAACT
TCCCCGTTGGTGCAAAGCAAGGATTATGTTGTTCAGCAGCTAACTGACAT
ATCTAACAAAGTAAAGCAGGCAGAAAAACAGTTAGAGAAGGGTAACCCGC
ATGCACGCAGTGGTTATTACTTATCAGAAAAGAAGTCAAACCCTGGAAAA
GGAAACGGTCAATTCGATCAGATTGGAAAAGATGCACAGAAATGTTGCAG
TGAGCATGTGCAGTCTATCATGTCTATGTACATAAAGAACGCGATGTTTA
GTCCTTCACATGGTCAAAACTGA