Gvermi5132.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5132.t1
Unique NameGvermi5132.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:355829..357259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709387.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08832,ko:K15409
KEGG Pathwayko05168,map05168
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031323,GO:0034622,GO:0034641,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903311
Evalue7.08e-131
EggNOG OGsKOG1290@1|root,KOG1290@2759|Eukaryota
EC2.7.11.1
Descriptionspliceosomal complex assembly
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5132Gvermi5132Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 355829..357259 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5132.t1.start1Gvermi5132.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 355829..355831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5132.t1.CDS1Gvermi5132.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 355829..357259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5132.t1.exon1Gvermi5132.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 355829..357259 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5132.t1.stop1Gvermi5132.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 357257..357259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5132.t1Gvermi5132.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 355829..357259 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5132.t1 ID=Gvermi5132.t1|Name=Gvermi5132.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp
MHSHIYKASSESMAQAVVESIGSLSLRDAMIMFPDQHPEYARSESEDDDD
YIQGGYHPVHIGETFKDGRYRILKKLGWGHFSTVWLSFDSLRNCHCAIKI
QKSESNYNSAARDEIRLLIALKKDKRKMREYVVELFDCFEHDGPHGRHIC
LAFEFLGKSLLSLIKRFNYRGVPLHMIKMTARKLLQALHYIHDTCGIIHT
DLKPENILHVHHDAEKAGIEKAVRKLSAEIEALESEKDRLSAAMKFCYEA
NHDLTFAAANVKIVDFGNSCWIEKQYTDDIQTRQYRAPEVILGCGYDTKA
DIWSLACIIFELATGDFLFEPRESEHFGRDEDHLALMTELLGSIPSHMLK
KGRHTSKYFDEGGNLLHIDELNFWSLRDVLREKYKFPPKDAEELADFLLP
MLYFDPENRVSAKAQLEHAFLQNEYDNGMEGDSMRLPSEGFASTEVLSVY
GPGEALPNIKISSLKEQIKHTKTKSV*
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spliced messenger RNA

>Gvermi5132.t1 ID=Gvermi5132.t1|Name=Gvermi5132.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24228:355829..357259+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCTCACATCTACAAGGCAAGCTCTGAATCGATGGCGCAGGCTGT
AGTTGAAAGCATTGGGAGCCTATCTCTTCGCGATGCCATGATTATGTTCC
CAGACCAACATCCAGAATACGCCCGTTCGGAAAGCGAGGATGATGACGAC
TACATACAGGGGGGTTATCATCCGGTCCATATCGGAGAAACGTTCAAAGA
TGGGAGGTATAGAATTCTGAAGAAGTTGGGATGGGGTCACTTCTCCACCG
TATGGCTCAGTTTTGATTCATTGAGAAACTGTCACTGTGCAATCAAGATT
CAGAAGTCCGAATCAAACTACAATTCTGCAGCAAGAGATGAAATACGACT
CCTAATTGCCCTAAAGAAGGATAAAAGAAAGATGCGTGAATACGTCGTCG
AACTTTTTGATTGCTTTGAACATGATGGACCTCATGGACGTCATATCTGT
TTGGCGTTTGAGTTTCTCGGCAAATCTTTGCTGTCTCTCATTAAGCGGTT
CAACTATCGAGGCGTCCCTCTTCACATGATTAAGATGACTGCCAGAAAAC
TACTGCAAGCTCTTCACTATATTCACGATACGTGTGGAATAATTCACACG
GACCTGAAACCGGAGAATATATTGCACGTTCACCACGACGCCGAAAAAGC
GGGGATAGAGAAAGCAGTTAGGAAGCTATCCGCAGAAATAGAGGCTTTGG
AGTCGGAGAAGGACAGATTGTCAGCTGCAATGAAATTTTGTTATGAAGCG
AACCATGATCTCACATTTGCTGCCGCCAATGTGAAGATTGTTGACTTTGG
AAACTCTTGTTGGATTGAAAAACAGTACACGGATGATATTCAGACGAGGC
AATACAGAGCACCTGAGGTCATTCTTGGATGTGGATACGATACAAAAGCA
GATATCTGGTCACTGGCATGCATTATCTTTGAGCTGGCCACCGGTGATTT
TCTGTTTGAACCACGCGAAAGTGAGCATTTTGGCAGGGATGAGGACCACC
TTGCCCTCATGACCGAGTTACTAGGGTCAATCCCCTCTCACATGTTAAAG
AAGGGTAGACACACTTCCAAGTACTTTGACGAAGGGGGAAATTTGCTGCA
CATCGACGAGCTGAACTTTTGGAGTCTGCGGGATGTCTTGCGTGAAAAGT
ATAAGTTTCCTCCAAAGGACGCCGAAGAGTTGGCGGACTTCCTCCTCCCC
ATGCTTTACTTCGACCCCGAAAACAGAGTTTCTGCCAAAGCACAGTTGGA
GCACGCGTTCTTACAGAACGAATATGATAATGGAATGGAAGGGGACAGTA
TGAGGTTACCCAGCGAAGGTTTTGCATCTACTGAAGTTCTGTCTGTTTAT
GGACCTGGAGAAGCGTTGCCAAATATAAAGATTAGCTCTCTTAAAGAGCA
GATTAAGCACACAAAAACGAAGAGCGTGTAA
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protein sequence of Gvermi5132.t1

>Gvermi5132.t1 ID=Gvermi5132.t1|Name=Gvermi5132.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=477bp
MHSHIYKASSESMAQAVVESIGSLSLRDAMIMFPDQHPEYARSESEDDDD
YIQGGYHPVHIGETFKDGRYRILKKLGWGHFSTVWLSFDSLRNCHCAIKI
QKSESNYNSAARDEIRLLIALKKDKRKMREYVVELFDCFEHDGPHGRHIC
LAFEFLGKSLLSLIKRFNYRGVPLHMIKMTARKLLQALHYIHDTCGIIHT
DLKPENILHVHHDAEKAGIEKAVRKLSAEIEALESEKDRLSAAMKFCYEA
NHDLTFAAANVKIVDFGNSCWIEKQYTDDIQTRQYRAPEVILGCGYDTKA
DIWSLACIIFELATGDFLFEPRESEHFGRDEDHLALMTELLGSIPSHMLK
KGRHTSKYFDEGGNLLHIDELNFWSLRDVLREKYKFPPKDAEELADFLLP
MLYFDPENRVSAKAQLEHAFLQNEYDNGMEGDSMRLPSEGFASTEVLSVY
GPGEALPNIKISSLKEQIKHTKTKSV*
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mRNA from alignment at ScGOVlb_24228:355829..357259+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5132.t1 ID=Gvermi5132.t1|Name=Gvermi5132.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24228:355829..357259+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCTCACATCTACAAGGCAAGCTCTGAATCGATGGCGCAGGCTGT
AGTTGAAAGCATTGGGAGCCTATCTCTTCGCGATGCCATGATTATGTTCC
CAGACCAACATCCAGAATACGCCCGTTCGGAAAGCGAGGATGATGACGAC
TACATACAGGGGGGTTATCATCCGGTCCATATCGGAGAAACGTTCAAAGA
TGGGAGGTATAGAATTCTGAAGAAGTTGGGATGGGGTCACTTCTCCACCG
TATGGCTCAGTTTTGATTCATTGAGAAACTGTCACTGTGCAATCAAGATT
CAGAAGTCCGAATCAAACTACAATTCTGCAGCAAGAGATGAAATACGACT
CCTAATTGCCCTAAAGAAGGATAAAAGAAAGATGCGTGAATACGTCGTCG
AACTTTTTGATTGCTTTGAACATGATGGACCTCATGGACGTCATATCTGT
TTGGCGTTTGAGTTTCTCGGCAAATCTTTGCTGTCTCTCATTAAGCGGTT
CAACTATCGAGGCGTCCCTCTTCACATGATTAAGATGACTGCCAGAAAAC
TACTGCAAGCTCTTCACTATATTCACGATACGTGTGGAATAATTCACACG
GACCTGAAACCGGAGAATATATTGCACGTTCACCACGACGCCGAAAAAGC
GGGGATAGAGAAAGCAGTTAGGAAGCTATCCGCAGAAATAGAGGCTTTGG
AGTCGGAGAAGGACAGATTGTCAGCTGCAATGAAATTTTGTTATGAAGCG
AACCATGATCTCACATTTGCTGCCGCCAATGTGAAGATTGTTGACTTTGG
AAACTCTTGTTGGATTGAAAAACAGTACACGGATGATATTCAGACGAGGC
AATACAGAGCACCTGAGGTCATTCTTGGATGTGGATACGATACAAAAGCA
GATATCTGGTCACTGGCATGCATTATCTTTGAGCTGGCCACCGGTGATTT
TCTGTTTGAACCACGCGAAAGTGAGCATTTTGGCAGGGATGAGGACCACC
TTGCCCTCATGACCGAGTTACTAGGGTCAATCCCCTCTCACATGTTAAAG
AAGGGTAGACACACTTCCAAGTACTTTGACGAAGGGGGAAATTTGCTGCA
CATCGACGAGCTGAACTTTTGGAGTCTGCGGGATGTCTTGCGTGAAAAGT
ATAAGTTTCCTCCAAAGGACGCCGAAGAGTTGGCGGACTTCCTCCTCCCC
ATGCTTTACTTCGACCCCGAAAACAGAGTTTCTGCCAAAGCACAGTTGGA
GCACGCGTTCTTACAGAACGAATATGATAATGGAATGGAAGGGGACAGTA
TGAGGTTACCCAGCGAAGGTTTTGCATCTACTGAAGTTCTGTCTGTTTAT
GGACCTGGAGAAGCGTTGCCAAATATAAAGATTAGCTCTCTTAAAGAGCA
GATTAAGCACACAAAAACGAAGAGCGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:355829..357259+

>Gvermi5132.t1 ID=Gvermi5132.t1|Name=Gvermi5132.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24228:355829..357259+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCTCACATCTACAAGGCAAGCTCTGAATCGATGGCGCAGGCTGT
AGTTGAAAGCATTGGGAGCCTATCTCTTCGCGATGCCATGATTATGTTCC
CAGACCAACATCCAGAATACGCCCGTTCGGAAAGCGAGGATGATGACGAC
TACATACAGGGGGGTTATCATCCGGTCCATATCGGAGAAACGTTCAAAGA
TGGGAGGTATAGAATTCTGAAGAAGTTGGGATGGGGTCACTTCTCCACCG
TATGGCTCAGTTTTGATTCATTGAGAAACTGTCACTGTGCAATCAAGATT
CAGAAGTCCGAATCAAACTACAATTCTGCAGCAAGAGATGAAATACGACT
CCTAATTGCCCTAAAGAAGGATAAAAGAAAGATGCGTGAATACGTCGTCG
AACTTTTTGATTGCTTTGAACATGATGGACCTCATGGACGTCATATCTGT
TTGGCGTTTGAGTTTCTCGGCAAATCTTTGCTGTCTCTCATTAAGCGGTT
CAACTATCGAGGCGTCCCTCTTCACATGATTAAGATGACTGCCAGAAAAC
TACTGCAAGCTCTTCACTATATTCACGATACGTGTGGAATAATTCACACG
GACCTGAAACCGGAGAATATATTGCACGTTCACCACGACGCCGAAAAAGC
GGGGATAGAGAAAGCAGTTAGGAAGCTATCCGCAGAAATAGAGGCTTTGG
AGTCGGAGAAGGACAGATTGTCAGCTGCAATGAAATTTTGTTATGAAGCG
AACCATGATCTCACATTTGCTGCCGCCAATGTGAAGATTGTTGACTTTGG
AAACTCTTGTTGGATTGAAAAACAGTACACGGATGATATTCAGACGAGGC
AATACAGAGCACCTGAGGTCATTCTTGGATGTGGATACGATACAAAAGCA
GATATCTGGTCACTGGCATGCATTATCTTTGAGCTGGCCACCGGTGATTT
TCTGTTTGAACCACGCGAAAGTGAGCATTTTGGCAGGGATGAGGACCACC
TTGCCCTCATGACCGAGTTACTAGGGTCAATCCCCTCTCACATGTTAAAG
AAGGGTAGACACACTTCCAAGTACTTTGACGAAGGGGGAAATTTGCTGCA
CATCGACGAGCTGAACTTTTGGAGTCTGCGGGATGTCTTGCGTGAAAAGT
ATAAGTTTCCTCCAAAGGACGCCGAAGAGTTGGCGGACTTCCTCCTCCCC
ATGCTTTACTTCGACCCCGAAAACAGAGTTTCTGCCAAAGCACAGTTGGA
GCACGCGTTCTTACAGAACGAATATGATAATGGAATGGAAGGGGACAGTA
TGAGGTTACCCAGCGAAGGTTTTGCATCTACTGAAGTTCTGTCTGTTTAT
GGACCTGGAGAAGCGTTGCCAAATATAAAGATTAGCTCTCTTAAAGAGCA
GATTAAGCACACAAAAACGAAGAGCGTGTAA
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