Gvermi5089.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5089.t1
Unique NameGvermi5089.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:97520..98235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5089Gvermi5089Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 97520..98235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1Gvermi5089.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 97520..98235 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1.stop1Gvermi5089.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 97520..97522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1.CDS1Gvermi5089.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 97520..98109 -
Gvermi5089.t1.CDS2Gvermi5089.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 98178..98235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1.exon1Gvermi5089.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 97520..98109 -
Gvermi5089.t1.exon2Gvermi5089.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 98178..98235 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1.intron1Gvermi5089.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 98110..98177 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5089.t1.start1Gvermi5089.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 98233..98235 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5089.t1 ID=Gvermi5089.t1|Name=Gvermi5089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=216bp
MPSMSSPLPSSCILHCSTASACLSSNYDLVHTALAEMHSCSIPPDAATHN
VLLTTALDQRHHSHAQRLVHTMRAENQPWAPHTFAAMIRSAAVQKQPQSI
AALHDRYLCHLRSHNLSLAHNISPLAVAHPDSVNQKPTVRACAAARADPT
MAAFHAYRSCAAASHALHLLRQLTHAHHMQPSHLLYSLVLDTCYNAGRTR
DAEVVRSTIPPHIKP*
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spliced messenger RNA

>Gvermi5089.t1 ID=Gvermi5089.t1|Name=Gvermi5089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp|location=Sequence derived from alignment at ScGOVlb_24228:97520..98235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGATGTCGAGTCCGCTGCCGTCCTCATGCATTTTGCACTGCTC
AACGGCCTCCGCCTGTCTCTCCTCCAACTACGACCTCGTGCACACTGCCC
TCGCCGAGATGCATTCCTGCTCCATCCCCCCCGACGCCGCCACCCACAAC
GTCCTGCTCACAACAGCCCTGGACCAGCGTCACCACTCCCATGCCCAACG
GCTCGTGCACACGATGCGCGCCGAAAACCAACCATGGGCGCCGCACACCT
TCGCTGCGATGATCAGATCTGCCGCCGTTCAGAAGCAACCGCAGTCCATT
GCCGCTCTACACGATCGCTATCTCTGCCATCTGCGCTCGCACAACCTTTC
CCTCGCCCACAACATCTCCCCGCTCGCCGTCGCCCACCCCGACTCCGTCA
ACCAAAAGCCCACCGTCCGCGCGTGCGCCGCTGCTCGCGCCGACCCCACC
ATGGCCGCCTTCCATGCCTATCGCTCATGTGCCGCCGCTTCGCACGCGCT
ACATTTGTTGCGTCAGCTCACCCACGCCCATCACATGCAGCCCTCTCACC
TGCTGTACTCGCTCGTGCTGGACACTTGTTATAACGCCGGCCGCACGCGC
GACGCCGAAGTTGTTCGTTCCACCATACCACCGCACATAAAGCCCTGA
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protein sequence of Gvermi5089.t1

>Gvermi5089.t1 ID=Gvermi5089.t1|Name=Gvermi5089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=216bp
MPSMSSPLPSSCILHCSTASACLSSNYDLVHTALAEMHSCSIPPDAATHN
VLLTTALDQRHHSHAQRLVHTMRAENQPWAPHTFAAMIRSAAVQKQPQSI
AALHDRYLCHLRSHNLSLAHNISPLAVAHPDSVNQKPTVRACAAARADPT
MAAFHAYRSCAAASHALHLLRQLTHAHHMQPSHLLYSLVLDTCYNAGRTR
DAEVVRSTIPPHIKP*
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mRNA from alignment at ScGOVlb_24228:97520..98235-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5089.t1 ID=Gvermi5089.t1|Name=Gvermi5089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=716bp|location=Sequence derived from alignment at ScGOVlb_24228:97520..98235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGATGTCGAGTCCGCTGCCGTCCTCATGCATTTTGCACTGCTC
AACGGCCTGTACGTCGACCATCACCACAGCGCTGATGCGCCCTCGCACCT
ACACTACTACAACCGCTTCATGCTAGCCGCCTGTCTCTCCTCCAACTACG
ACCTCGTGCACACTGCCCTCGCCGAGATGCATTCCTGCTCCATCCCCCCC
GACGCCGCCACCCACAACGTCCTGCTCACAACAGCCCTGGACCAGCGTCA
CCACTCCCATGCCCAACGGCTCGTGCACACGATGCGCGCCGAAAACCAAC
CATGGGCGCCGCACACCTTCGCTGCGATGATCAGATCTGCCGCCGTTCAG
AAGCAACCGCAGTCCATTGCCGCTCTACACGATCGCTATCTCTGCCATCT
GCGCTCGCACAACCTTTCCCTCGCCCACAACATCTCCCCGCTCGCCGTCG
CCCACCCCGACTCCGTCAACCAAAAGCCCACCGTCCGCGCGTGCGCCGCT
GCTCGCGCCGACCCCACCATGGCCGCCTTCCATGCCTATCGCTCATGTGC
CGCCGCTTCGCACGCGCTACATTTGTTGCGTCAGCTCACCCACGCCCATC
ACATGCAGCCCTCTCACCTGCTGTACTCGCTCGTGCTGGACACTTGTTAT
AACGCCGGCCGCACGCGCGACGCCGAAGTTGTTCGTTCCACCATACCACC
GCACATAAAGCCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:97520..98235-

>Gvermi5089.t1 ID=Gvermi5089.t1|Name=Gvermi5089.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=648bp|location=Sequence derived from alignment at ScGOVlb_24228:97520..98235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGATGTCGAGTCCGCTGCCGTCCTCATGCATTTTGCACTGCTC
AACGGCCTCCGCCTGTCTCTCCTCCAACTACGACCTCGTGCACACTGCCC
TCGCCGAGATGCATTCCTGCTCCATCCCCCCCGACGCCGCCACCCACAAC
GTCCTGCTCACAACAGCCCTGGACCAGCGTCACCACTCCCATGCCCAACG
GCTCGTGCACACGATGCGCGCCGAAAACCAACCATGGGCGCCGCACACCT
TCGCTGCGATGATCAGATCTGCCGCCGTTCAGAAGCAACCGCAGTCCATT
GCCGCTCTACACGATCGCTATCTCTGCCATCTGCGCTCGCACAACCTTTC
CCTCGCCCACAACATCTCCCCGCTCGCCGTCGCCCACCCCGACTCCGTCA
ACCAAAAGCCCACCGTCCGCGCGTGCGCCGCTGCTCGCGCCGACCCCACC
ATGGCCGCCTTCCATGCCTATCGCTCATGTGCCGCCGCTTCGCACGCGCT
ACATTTGTTGCGTCAGCTCACCCACGCCCATCACATGCAGCCCTCTCACC
TGCTGTACTCGCTCGTGCTGGACACTTGTTATAACGCCGGCCGCACGCGC
GACGCCGAAGTTGTTCGTTCCACCATACCACCGCACATAAAGCCCTGA
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