Gvermi4450.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi4450.t1
Unique Name	Gvermi4450.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_147	contig	ScGOVlb_147:2015555..2017420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707714.1
PFAMs	PH,Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04456,ko:K13303
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG Module	M00676
Evalue	3.81e-78
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi4450	Gvermi4450	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_147 2015555..2017420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4450.t1.start1	Gvermi4450.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_147 2015555..2015557 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4450.t1.CDS1	Gvermi4450.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_147 2015555..2017420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4450.t1.exon1	Gvermi4450.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_147 2015555..2017420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4450.t1.stop1	Gvermi4450.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_147 2017418..2017420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4450.t1	Gvermi4450.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_147 2015555..2017420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_147:2015555..2017420+
coding sequence from alignment at ScGOVlb_147:2015555..2017420+

mRNA sequence

>Gvermi4450.t1 ID=Gvermi4450.t1|Name=Gvermi4450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=622bp
MASSPRSVRERPAPAAASSFPPFAATRQARRSLNLRTRVYRAPAADSIHN
DSLSLLERIPPTTTASAWIKCARFPFMAKYQRLWIELRSRIVLATGDNAQ
FVSLFSIHACSVSRKPSAPLLKITSSSSSHAVWLRFDDDRAADIWEKALM
NATQQRVVSISDFEFISPIGKGASGKVFLVVDRKTGHKLALKILDKNKVF
ESKTTLRHALDERLALQMVDGHPFFSRLRYAFQTRSFFYLAIDFYDGGDL
YQYLKTHSGRLRESQVKSVAAQVLLALEHLHTLGFVYRDLKPENVLLDSQ
GHVRLADFGLCKFLPDRTLTNSICGTHTYAAPEMLSVRNYGKSVDLWAFG
VFVYHMLRGRTPYEARELDQVIANMNNRRIRFSSSTSGELVNMVKRLLDW
NPDTRLGCGQNGCAEVREHPFFRGMDWKKVYMRLTGEDALLDGGGATLPA
GEAPVGDAPITAPPESSVVPSCAAAHAANEAGDTPGTLIVNDEYAHMDAL
DEGHTKAAVANAEPVPVPVPKDDGKGSGAARLGRRRKGGARQNSLRERMK
AASAEQDDLRNFDMSEWGKISVDQDYDDVTYGDHALWPESRARRKILEDD
RLIVGYAYCSVGAPFVLPGEL*

spliced messenger RNA

>Gvermi4450.t1 ID=Gvermi4450.t1|Name=Gvermi4450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_147:2015555..2017420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTCGCCGCGCTCCGTGCGGGAGAGgccggcccccgccgccgc
ctcctccttcccccccttcgccgccACGCGACAGGCCAGGCGCTCCCTCA
ACTTGCGAACGCGCGTGTACAGGGCGCCCGCCGCCGATAGCATCCACAAT
GACTCGTTGTCGCTGTTGGAGAGAATCCCGCCCACCACCACCGCCTCGGC
GTGGATCAAGTGTGCCAGGTTCCCTTTCATGGCCAAGTACCAGCGCCTAT
GGATCGAGCTGCGCTCCAGGATTGTGCTGGCCACCGGCGACAACGCACAG
TTTGTTTCCCTCTTCTCCATCCACGCCTGTTCCGTCTCCCGCAAACCTTC
CGCCCCGCTGCTCAAGATCACCTCCTCCTCCAGCTCGCACGCCGTGTGGC
TGCGCTTCGACGACGACCGCGCCGCCGACATCTGGGAAAAGGCCCTCATG
AACGCCACTCAGCAGCGCGTCGTATCTATTTCCGACTTTGAGTTCATCAG
CCCCATCGGCAAGGGCGCCAGCGGAAAGGTCTTTCTCGTCGTCGACCGCA
AGACCGGCCACAAGCTCGCCCTCAAGATCCTGGACAAGAACAAGGTCTTC
GAGTCGAAGACAACATTGCGACACGCCTTGGACGAGCGCCTCGCCTTGCA
GATGGTCGATGGACACCCCTTCTTCTCGCGCCTTCGCTATGCCTTTCAGA
CCCGCTCTTTTTTTTACCTCGCCATCGACTTTTACGACGGCGGCGACCTT
TACCAGTACTTGAAAACCCACTCCGGTCGGTTGAGGGAGTCGCAGGTCAA
GTCCGTCGCCGCCCAGGTGTTGCTCGCGCTTGAGCATTTGCACACCCTGG
GCTTTGTGTACCGTGACCTCAAGCCGGAGAACGTGCTGCTGGACTCGCAA
GGACACGTGCGTCTGGCCGATTTTGGCTTGTGCAAGTTCCTCCCAGATCG
AACGCTCACCAACTCCATCTGCGGCACCCACACGTACGCCGCCCCGGAGA
TGCTTTCCGTGCGCAATTATGGCAAGTCGGTCGATCTTTGGGCATTTGGC
GTGTTTGTATACCACATGCTCCGGGGCCGCACCCCCTACGAGGCGCGAGA
ACTGGACCAGGTCATTGCCAACATGAACAACCGCCGCATTCGCTTCTCGT
CCAGCACATCGGGAGAGCTGGTCAACATGGTCAAGCGCTTGTTGGACTGG
AACCCGGACACGAGACTGGGCTGCGGACAGAACGGGTGCGCTGAGGTCAG
GGAACACCCCTTCTTCCGCGGCATGGATTGGAAAAAGGTCTACATGAGAC
TTACTGGTGAGGACGCTCTGCTTGACGGCGGGGGTGCCACTTTGCCGGCT
GGTGAGGCGCCTGTTGGCGATGCTCCGATAACTGCGCCGCCTGAGTCATC
AGTGGTGCCGTCCTGCGCCGCCGCGCATGCGGCGAACGAGGCTGGCGATA
CACCGGGAACGCTAATTGTGAATGACGAGTACGCGCACATGGACGCGTTG
GACGAGGGGCACACCAAGGCCGCTGTTGCCAATGCAGAGCCGGTGCCGGT
GCCAGTGCCGAAGGACGACGGTAAGGGCTCGGGCGCAGCGCGGCTCGGGC
GCCGCCGAAAGGGCGGCGCCAGGCAGAACAGCCTGCGAGAACGCATGAAA
GCGGCGTCGGCTGAGCAGGACGACCTCAGAAACTTTGACATGAGCGAGTG
GGGAAAGATCAGCGTTGATCAGGACTATGATGACGTCACGTACGGCGACC
ACGCTTTGTGGCCCGAATCCAGGGCGCGCCGCAAAATCTTGGAAGACGAC
CGCCTCATCGTGGGCTACGCCTACTGCAGTGTTGGCGCGCCCTTCGTCCT
GCCTGGCGAGCTGTAG

protein sequence of Gvermi4450.t1

>Gvermi4450.t1 ID=Gvermi4450.t1|Name=Gvermi4450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=622bp
MASSPRSVRERPAPAAASSFPPFAATRQARRSLNLRTRVYRAPAADSIHN
DSLSLLERIPPTTTASAWIKCARFPFMAKYQRLWIELRSRIVLATGDNAQ
FVSLFSIHACSVSRKPSAPLLKITSSSSSHAVWLRFDDDRAADIWEKALM
NATQQRVVSISDFEFISPIGKGASGKVFLVVDRKTGHKLALKILDKNKVF
ESKTTLRHALDERLALQMVDGHPFFSRLRYAFQTRSFFYLAIDFYDGGDL
YQYLKTHSGRLRESQVKSVAAQVLLALEHLHTLGFVYRDLKPENVLLDSQ
GHVRLADFGLCKFLPDRTLTNSICGTHTYAAPEMLSVRNYGKSVDLWAFG
VFVYHMLRGRTPYEARELDQVIANMNNRRIRFSSSTSGELVNMVKRLLDW
NPDTRLGCGQNGCAEVREHPFFRGMDWKKVYMRLTGEDALLDGGGATLPA
GEAPVGDAPITAPPESSVVPSCAAAHAANEAGDTPGTLIVNDEYAHMDAL
DEGHTKAAVANAEPVPVPVPKDDGKGSGAARLGRRRKGGARQNSLRERMK
AASAEQDDLRNFDMSEWGKISVDQDYDDVTYGDHALWPESRARRKILEDD
RLIVGYAYCSVGAPFVLPGEL*

mRNA from alignment at ScGOVlb_147:2015555..2017420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi4450.t1 ID=Gvermi4450.t1|Name=Gvermi4450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_147:2015555..2017420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGTCGCCGCGCTCCGTGCGGGAGAGgccggcccccgccgccgc
ctcctccttcccccccttcgccgccACGCGACAGGCCAGGCGCTCCCTCA
ACTTGCGAACGCGCGTGTACAGGGCGCCCGCCGCCGATAGCATCCACAAT
GACTCGTTGTCGCTGTTGGAGAGAATCCCGCCCACCACCACCGCCTCGGC
GTGGATCAAGTGTGCCAGGTTCCCTTTCATGGCCAAGTACCAGCGCCTAT
GGATCGAGCTGCGCTCCAGGATTGTGCTGGCCACCGGCGACAACGCACAG
TTTGTTTCCCTCTTCTCCATCCACGCCTGTTCCGTCTCCCGCAAACCTTC
CGCCCCGCTGCTCAAGATCACCTCCTCCTCCAGCTCGCACGCCGTGTGGC
TGCGCTTCGACGACGACCGCGCCGCCGACATCTGGGAAAAGGCCCTCATG
AACGCCACTCAGCAGCGCGTCGTATCTATTTCCGACTTTGAGTTCATCAG
CCCCATCGGCAAGGGCGCCAGCGGAAAGGTCTTTCTCGTCGTCGACCGCA
AGACCGGCCACAAGCTCGCCCTCAAGATCCTGGACAAGAACAAGGTCTTC
GAGTCGAAGACAACATTGCGACACGCCTTGGACGAGCGCCTCGCCTTGCA
GATGGTCGATGGACACCCCTTCTTCTCGCGCCTTCGCTATGCCTTTCAGA
CCCGCTCTTTTTTTTACCTCGCCATCGACTTTTACGACGGCGGCGACCTT
TACCAGTACTTGAAAACCCACTCCGGTCGGTTGAGGGAGTCGCAGGTCAA
GTCCGTCGCCGCCCAGGTGTTGCTCGCGCTTGAGCATTTGCACACCCTGG
GCTTTGTGTACCGTGACCTCAAGCCGGAGAACGTGCTGCTGGACTCGCAA
GGACACGTGCGTCTGGCCGATTTTGGCTTGTGCAAGTTCCTCCCAGATCG
AACGCTCACCAACTCCATCTGCGGCACCCACACGTACGCCGCCCCGGAGA
TGCTTTCCGTGCGCAATTATGGCAAGTCGGTCGATCTTTGGGCATTTGGC
GTGTTTGTATACCACATGCTCCGGGGCCGCACCCCCTACGAGGCGCGAGA
ACTGGACCAGGTCATTGCCAACATGAACAACCGCCGCATTCGCTTCTCGT
CCAGCACATCGGGAGAGCTGGTCAACATGGTCAAGCGCTTGTTGGACTGG
AACCCGGACACGAGACTGGGCTGCGGACAGAACGGGTGCGCTGAGGTCAG
GGAACACCCCTTCTTCCGCGGCATGGATTGGAAAAAGGTCTACATGAGAC
TTACTGGTGAGGACGCTCTGCTTGACGGCGGGGGTGCCACTTTGCCGGCT
GGTGAGGCGCCTGTTGGCGATGCTCCGATAACTGCGCCGCCTGAGTCATC
AGTGGTGCCGTCCTGCGCCGCCGCGCATGCGGCGAACGAGGCTGGCGATA
CACCGGGAACGCTAATTGTGAATGACGAGTACGCGCACATGGACGCGTTG
GACGAGGGGCACACCAAGGCCGCTGTTGCCAATGCAGAGCCGGTGCCGGT
GCCAGTGCCGAAGGACGACGGTAAGGGCTCGGGCGCAGCGCGGCTCGGGC
GCCGCCGAAAGGGCGGCGCCAGGCAGAACAGCCTGCGAGAACGCATGAAA
GCGGCGTCGGCTGAGCAGGACGACCTCAGAAACTTTGACATGAGCGAGTG
GGGAAAGATCAGCGTTGATCAGGACTATGATGACGTCACGTACGGCGACC
ACGCTTTGTGGCCCGAATCCAGGGCGCGCCGCAAAATCTTGGAAGACGAC
CGCCTCATCGTGGGCTACGCCTACTGCAGTGTTGGCGCGCCCTTCGTCCT
GCCTGGCGAGCTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_147:2015555..2017420+

>Gvermi4450.t1 ID=Gvermi4450.t1|Name=Gvermi4450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1866bp|location=Sequence derived from alignment at ScGOVlb_147:2015555..2017420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGTCGCCGCGCTCCGTGCGGGAGAGgccggcccccgccgccgc
ctcctccttcccccccttcgccgccACGCGACAGGCCAGGCGCTCCCTCA
ACTTGCGAACGCGCGTGTACAGGGCGCCCGCCGCCGATAGCATCCACAAT
GACTCGTTGTCGCTGTTGGAGAGAATCCCGCCCACCACCACCGCCTCGGC
GTGGATCAAGTGTGCCAGGTTCCCTTTCATGGCCAAGTACCAGCGCCTAT
GGATCGAGCTGCGCTCCAGGATTGTGCTGGCCACCGGCGACAACGCACAG
TTTGTTTCCCTCTTCTCCATCCACGCCTGTTCCGTCTCCCGCAAACCTTC
CGCCCCGCTGCTCAAGATCACCTCCTCCTCCAGCTCGCACGCCGTGTGGC
TGCGCTTCGACGACGACCGCGCCGCCGACATCTGGGAAAAGGCCCTCATG
AACGCCACTCAGCAGCGCGTCGTATCTATTTCCGACTTTGAGTTCATCAG
CCCCATCGGCAAGGGCGCCAGCGGAAAGGTCTTTCTCGTCGTCGACCGCA
AGACCGGCCACAAGCTCGCCCTCAAGATCCTGGACAAGAACAAGGTCTTC
GAGTCGAAGACAACATTGCGACACGCCTTGGACGAGCGCCTCGCCTTGCA
GATGGTCGATGGACACCCCTTCTTCTCGCGCCTTCGCTATGCCTTTCAGA
CCCGCTCTTTTTTTTACCTCGCCATCGACTTTTACGACGGCGGCGACCTT
TACCAGTACTTGAAAACCCACTCCGGTCGGTTGAGGGAGTCGCAGGTCAA
GTCCGTCGCCGCCCAGGTGTTGCTCGCGCTTGAGCATTTGCACACCCTGG
GCTTTGTGTACCGTGACCTCAAGCCGGAGAACGTGCTGCTGGACTCGCAA
GGACACGTGCGTCTGGCCGATTTTGGCTTGTGCAAGTTCCTCCCAGATCG
AACGCTCACCAACTCCATCTGCGGCACCCACACGTACGCCGCCCCGGAGA
TGCTTTCCGTGCGCAATTATGGCAAGTCGGTCGATCTTTGGGCATTTGGC
GTGTTTGTATACCACATGCTCCGGGGCCGCACCCCCTACGAGGCGCGAGA
ACTGGACCAGGTCATTGCCAACATGAACAACCGCCGCATTCGCTTCTCGT
CCAGCACATCGGGAGAGCTGGTCAACATGGTCAAGCGCTTGTTGGACTGG
AACCCGGACACGAGACTGGGCTGCGGACAGAACGGGTGCGCTGAGGTCAG
GGAACACCCCTTCTTCCGCGGCATGGATTGGAAAAAGGTCTACATGAGAC
TTACTGGTGAGGACGCTCTGCTTGACGGCGGGGGTGCCACTTTGCCGGCT
GGTGAGGCGCCTGTTGGCGATGCTCCGATAACTGCGCCGCCTGAGTCATC
AGTGGTGCCGTCCTGCGCCGCCGCGCATGCGGCGAACGAGGCTGGCGATA
CACCGGGAACGCTAATTGTGAATGACGAGTACGCGCACATGGACGCGTTG
GACGAGGGGCACACCAAGGCCGCTGTTGCCAATGCAGAGCCGGTGCCGGT
GCCAGTGCCGAAGGACGACGGTAAGGGCTCGGGCGCAGCGCGGCTCGGGC
GCCGCCGAAAGGGCGGCGCCAGGCAGAACAGCCTGCGAGAACGCATGAAA
GCGGCGTCGGCTGAGCAGGACGACCTCAGAAACTTTGACATGAGCGAGTG
GGGAAAGATCAGCGTTGATCAGGACTATGATGACGTCACGTACGGCGACC
ACGCTTTGTGGCCCGAATCCAGGGCGCGCCGCAAAATCTTGGAAGACGAC
CGCCTCATCGTGGGCTACGCCTACTGCAGTGTTGGCGCGCCCTTCGTCCT
GCCTGGCGAGCTGTAG