Gvermi4444.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4444.t1
Unique NameGvermi4444.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1993017..1994019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705274.1
Preferred namePSMB1
PFAMsProteasome
Max annot lvl2759|Eukaryota
KEGG koko:K02732
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019748,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0098542,GO:0098827,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue1.56e-80
EggNOG OGsCOG0638@1|root,KOG0179@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4444Gvermi4444Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1993017..1994019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1Gvermi4444.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1993017..1994019 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1.start1Gvermi4444.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1993017..1993019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1.CDS1Gvermi4444.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1993017..1993509 +
Gvermi4444.t1.CDS2Gvermi4444.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1993724..1994019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1.exon1Gvermi4444.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1993017..1993509 +
Gvermi4444.t1.exon2Gvermi4444.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1993724..1994019 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1.intron1Gvermi4444.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1993510..1993723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4444.t1.stop1Gvermi4444.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1994017..1994019 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4444.t1 ID=Gvermi4444.t1|Name=Gvermi4444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=263bp
MSILQPNASIRGPPYADPQQAAAGFTLGEHHDPSDPLDVAHPPVPISHHF
QPYDNNGGTVVSVSGADYTIVASDTRLGSGYSVPCRYVSRVLKLTDKAVL
ASSGMHTDIAILHKVLKIRLTQYKHRHRKDMTLEAISQLLSTILYYRRFQ
PYYTFNVLGGIDEKGQGWSYGYDAIGSHEKVRAVCSGTGQYLLQPVLDNQ
VEFRQMTPDPSRKELPLEPCVELVKDAFTSAGERDIYTGDTVEICRITPK
GVEIEKFELRAD*
back to top

spliced messenger RNA

>Gvermi4444.t1 ID=Gvermi4444.t1|Name=Gvermi4444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=789bp|location=Sequence derived from alignment at ScGOVlb_147:1993017..1994019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATTTTGCAGCCAAACGCCTCGATCCGCGGTCCCCCGTATGCCGA
TCCACAGCAAGCAGCTGCCGGTTTCACACTCGGCGAACACCATGATCCCA
GTGACCCTTTAGACGTCGCCCACCCACCCGTACCCATCTCTCACCACTTC
CAACCTTACGACAACAACGGGGGCACCGTCGTATCTGTATCCGGTGCCGA
TTACACCATCGTCGCGTCCGACACTCGCCTTGGCTCGGGGTACTCCGTGC
CTTGTCGATATGTCAGCAGGGTTCTCAAACTCACCGACAAGGCTGTGTTG
GCTAGCAGTGGCATGCACACTGATATTGCGATTCTCCACAAGGTTTTGAA
GATAAGACTGACGCAGTACAAGCATCGACACAGGAAGGACATGACTTTGG
AGGCCATTTCACAGCTCCTGTCAACTATATTGTATTACCGACGTTTTCAG
CCTTACTACACCTTCAACGTCCTCGGCGGTATAGACGAAAAAGGGCAAGG
ATGGTCGTACGGTTACGATGCCATCGGGTCGCATGAGAAGGTGCGAGCCG
TTTGCAGTGGTACTGGCCAGTATCTCTTGCAACCCGTCTTGGATAACCAG
GTCGAGTTTCGTCAAATGACCCCTGATCCCAGCCGAAAAGAGCTCCCGTT
GGAGCCGTGCGTTGAGCTGGTGAAGGACGCCTTCACTTCTGCGGGTGAGC
GTGATATTTACACTGGTGACACAGTCGAAATCTGTCGAATCACACCGAAA
GGCGTTGAAATTGAGAAGTTTGAGCTGAGAGCGGACTAG
back to top

protein sequence of Gvermi4444.t1

>Gvermi4444.t1 ID=Gvermi4444.t1|Name=Gvermi4444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=263bp
MSILQPNASIRGPPYADPQQAAAGFTLGEHHDPSDPLDVAHPPVPISHHF
QPYDNNGGTVVSVSGADYTIVASDTRLGSGYSVPCRYVSRVLKLTDKAVL
ASSGMHTDIAILHKVLKIRLTQYKHRHRKDMTLEAISQLLSTILYYRRFQ
PYYTFNVLGGIDEKGQGWSYGYDAIGSHEKVRAVCSGTGQYLLQPVLDNQ
VEFRQMTPDPSRKELPLEPCVELVKDAFTSAGERDIYTGDTVEICRITPK
GVEIEKFELRAD*
back to top

mRNA from alignment at ScGOVlb_147:1993017..1994019+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4444.t1 ID=Gvermi4444.t1|Name=Gvermi4444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1003bp|location=Sequence derived from alignment at ScGOVlb_147:1993017..1994019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATTTTGCAGCCAAACGCCTCGATCCGCGGTCCCCCGTATGCCGA
TCCACAGCAAGCAGCTGCCGGTTTCACACTCGGCGAACACCATGATCCCA
GTGACCCTTTAGACGTCGCCCACCCACCCGTACCCATCTCTCACCACTTC
CAACCTTACGACAACAACGGGGGCACCGTCGTATCTGTATCCGGTGCCGA
TTACACCATCGTCGCGTCCGACACTCGCCTTGGCTCGGGGTACTCCGTGC
CTTGTCGATATGTCAGCAGGGTTCTCAAACTCACCGACAAGGCTGTGTTG
GCTAGCAGTGGCATGCACACTGATATTGCGATTCTCCACAAGGTTTTGAA
GATAAGACTGACGCAGTACAAGCATCGACACAGGAAGGACATGACTTTGG
AGGCCATTTCACAGCTCCTGTCAACTATATTGTATTACCGACGTTTTCAG
CCTTACTACACCTTCAACGTCCTCGGCGGTATAGACGAAAAAGGTACGCT
TTCCAACAATTTCAGTCTTAGGTTCCCCCTTCCTTTTCTATGAAGATTGT
GTTGGCTCCTACTGATGCATCTGAATGGATGCACTGATTGAGAGTATCAC
ATTATTTTTTTTCACCTCTGACGTCTGAGAAAAGCGCAAAACCATTTCCC
ATGTTGATAAGGAAACTAACCCATCTTCTTATTTACTTATCTCTTTTTCC
TGTGTAGGGCAAGGATGGTCGTACGGTTACGATGCCATCGGGTCGCATGA
GAAGGTGCGAGCCGTTTGCAGTGGTACTGGCCAGTATCTCTTGCAACCCG
TCTTGGATAACCAGGTCGAGTTTCGTCAAATGACCCCTGATCCCAGCCGA
AAAGAGCTCCCGTTGGAGCCGTGCGTTGAGCTGGTGAAGGACGCCTTCAC
TTCTGCGGGTGAGCGTGATATTTACACTGGTGACACAGTCGAAATCTGTC
GAATCACACCGAAAGGCGTTGAAATTGAGAAGTTTGAGCTGAGAGCGGAC
TAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_147:1993017..1994019+

>Gvermi4444.t1 ID=Gvermi4444.t1|Name=Gvermi4444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=789bp|location=Sequence derived from alignment at ScGOVlb_147:1993017..1994019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATTTTGCAGCCAAACGCCTCGATCCGCGGTCCCCCGTATGCCGA
TCCACAGCAAGCAGCTGCCGGTTTCACACTCGGCGAACACCATGATCCCA
GTGACCCTTTAGACGTCGCCCACCCACCCGTACCCATCTCTCACCACTTC
CAACCTTACGACAACAACGGGGGCACCGTCGTATCTGTATCCGGTGCCGA
TTACACCATCGTCGCGTCCGACACTCGCCTTGGCTCGGGGTACTCCGTGC
CTTGTCGATATGTCAGCAGGGTTCTCAAACTCACCGACAAGGCTGTGTTG
GCTAGCAGTGGCATGCACACTGATATTGCGATTCTCCACAAGGTTTTGAA
GATAAGACTGACGCAGTACAAGCATCGACACAGGAAGGACATGACTTTGG
AGGCCATTTCACAGCTCCTGTCAACTATATTGTATTACCGACGTTTTCAG
CCTTACTACACCTTCAACGTCCTCGGCGGTATAGACGAAAAAGGGCAAGG
ATGGTCGTACGGTTACGATGCCATCGGGTCGCATGAGAAGGTGCGAGCCG
TTTGCAGTGGTACTGGCCAGTATCTCTTGCAACCCGTCTTGGATAACCAG
GTCGAGTTTCGTCAAATGACCCCTGATCCCAGCCGAAAAGAGCTCCCGTT
GGAGCCGTGCGTTGAGCTGGTGAAGGACGCCTTCACTTCTGCGGGTGAGC
GTGATATTTACACTGGTGACACAGTCGAAATCTGTCGAATCACACCGAAA
GGCGTTGAAATTGAGAAGTTTGAGCTGAGAGCGGACTAG
back to top