Gvermi4443.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4443.t1
Unique NameGvermi4443.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1991281..1992663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121441.AUCX01000009_gene2400
PFAMsPHO4
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03306
KEGG TC2.A.20
Evalue2.09e-45
EggNOG OGsCOG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,42MYT@68525|delta/epsilon subdivisions,2WM6R@28221|Deltaproteobacteria,2MGR6@213115|Desulfovibrionales
Descriptionphosphate transporter
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4443Gvermi4443Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1991281..1992663 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4443.t1.start1Gvermi4443.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1991281..1991283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4443.t1.CDS1Gvermi4443.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1991281..1992663 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4443.t1.exon1Gvermi4443.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1991281..1992663 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4443.t1.stop1Gvermi4443.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1992661..1992663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4443.t1Gvermi4443.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1991281..1992663 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4443.t1 ID=Gvermi4443.t1|Name=Gvermi4443.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=461bp
MAADLYMLIATGACGAFGMLFVLGANDVANSVGVPIGSGALTTRMAIVLA
AVCNILGASLAGSRVAQTLSKGVSPSLAEDPASYEAALAFLCVLLSAMTI
IFIGTVLALPLSSTHAVVGAVAGAAILLNGPRSLHWQKLYQIAAAWVVSP
LLGCVLGFFLLHLTSLALRGKRFNYIVAPSLAGLTAAAVAGVLTDSLVQI
TGSEHPSTCDFLTGLTMAFALGFVSGWLVVNGEYEKLASGTLYGNSDEKS
VENPLIEPEEEPEDSGTDYGMAKLLQRKKIALTENSWYFGALLVTTVPAL
SFAHGSNDVSNGVGPFIMILRYYLIKSSDGKIDTIERSLLLGVLCTGGVA
IALGLSIFGARVIATIGGSGEKSLSSKPWTFARAFPAQFAAACSVLVASS
FGLPVSTSHAVVGAVVGVQLASASHVNWKTLTNILIGAGLTPILAAITCI
ILLAVLLVVL*
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spliced messenger RNA

>Gvermi4443.t1 ID=Gvermi4443.t1|Name=Gvermi4443.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_147:1991281..1992663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGACTTGTACATGCTTATCGCCACAGGGGCGTGTGGCGCGTT
TGGAATGCTTTTCGTGCTTGGTGCCAACGATGTAGCCAATTCTGTAGGAG
TTCCCATCGGGAGCGGCGCTCTCACAACGCGAATGGCCATTGTGCTAGCT
GCCGTATGCAACATTCTGGGTGCATCACTTGCCGGCTCGCGCGTCGCCCA
GACGCTGTCAAAAGGTGTTTCCCCTTCCCTCGCTGAAGATCCGGCTTCGT
ACGAAGCAGCTTTGGCCTTCTTATGCGTGCTGCTCTCCGCCATGACTATC
ATCTTTATCGGAACCGTACTCGCGCTACCCCTATCTTCCACGCACGCGGT
CGTCGGCGCGGTGGCGGGCGCAGCAATCTTGCTGAATGGTCCACGCTCCT
TGCACTGGCAGAAACTTTACCAAATCGCGGCTGCATGGGTGGTGTCGCCG
CTGTTAGGCTGCGTGTTAGGGTTCTTTTTGCTCCATCTTACAAGCCTGGC
GTTGCGAGGCAAGCGCTTCAATTACATCGTGGCACCAAGTCTAGCAGGGC
TCACAGCTGCGGCCGTTGCAGGTGTACTAACCGACTCTCTGGTGCAAATT
ACCGGTAGCGAGCATCCCTCAACTTGCGATTTCCTCACCGGTTTGACGAT
GGCATTCGCGCTCGGGTTTGTAAGTGGATGGTTGGTGGTGAATGGCGAAT
ATGAGAAGCTGGCCTCGGGAACGCTGTACGGAAATTCAGATGAGAAGTCT
GTCGAGAACCCGCTCATTGAGCCTGAGGAAGAGCCGGAAGATTCTGGTAC
CGACTATGGGATGGCCAAGTTGTTGCAACGTAAGAAAATCGCACTCACGG
AAAACTCATGGTACTTTGGAGCACTTTTGGTGACGACCGTGCCGGCATTG
TCATTCGCGCACGGAAGCAATGATGTGTCCAATGGTGTGGGGCCGTTCAT
AATGATCTTGCGCTATTATCTCATCAAAAGCAGCGACGGCAAGATAGACA
CAATAGAGCGCAGTCTTTTGTTGGGGGTGCTTTGCACCGGTGGGGTGGCA
ATCGCACTCGGGTTGAGTATCTTCGGAGCCCGGGTGATCGCCACGATTGG
AGGCAGCGGTGAAAAGTCTCTTAGCTCGAAGCCGTGGACTTTTGCCAGGG
CTTTTCCGGCGCAGTTTGCGGCGGCCTGCTCGGTGTTGGTGGCGTCGTCG
TTCGGTCTGCCTGTCTCGACGTCGCACGCTGTTGTGGGGGCGGTGGTTGG
GGTGCAGCTGGCTAGTGCGTCTCATGTGAACTGGAAAACATTGACCAACA
TTTTGATAGGGGCTGGATTAACGCCGATACTGGCGGCGATTACGTGCATC
ATTCTGCTTGCCGTGCTGCTTGTTGTGCTGTAG
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protein sequence of Gvermi4443.t1

>Gvermi4443.t1 ID=Gvermi4443.t1|Name=Gvermi4443.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=461bp
MAADLYMLIATGACGAFGMLFVLGANDVANSVGVPIGSGALTTRMAIVLA
AVCNILGASLAGSRVAQTLSKGVSPSLAEDPASYEAALAFLCVLLSAMTI
IFIGTVLALPLSSTHAVVGAVAGAAILLNGPRSLHWQKLYQIAAAWVVSP
LLGCVLGFFLLHLTSLALRGKRFNYIVAPSLAGLTAAAVAGVLTDSLVQI
TGSEHPSTCDFLTGLTMAFALGFVSGWLVVNGEYEKLASGTLYGNSDEKS
VENPLIEPEEEPEDSGTDYGMAKLLQRKKIALTENSWYFGALLVTTVPAL
SFAHGSNDVSNGVGPFIMILRYYLIKSSDGKIDTIERSLLLGVLCTGGVA
IALGLSIFGARVIATIGGSGEKSLSSKPWTFARAFPAQFAAACSVLVASS
FGLPVSTSHAVVGAVVGVQLASASHVNWKTLTNILIGAGLTPILAAITCI
ILLAVLLVVL*
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mRNA from alignment at ScGOVlb_147:1991281..1992663+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4443.t1 ID=Gvermi4443.t1|Name=Gvermi4443.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_147:1991281..1992663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCTGACTTGTACATGCTTATCGCCACAGGGGCGTGTGGCGCGTT
TGGAATGCTTTTCGTGCTTGGTGCCAACGATGTAGCCAATTCTGTAGGAG
TTCCCATCGGGAGCGGCGCTCTCACAACGCGAATGGCCATTGTGCTAGCT
GCCGTATGCAACATTCTGGGTGCATCACTTGCCGGCTCGCGCGTCGCCCA
GACGCTGTCAAAAGGTGTTTCCCCTTCCCTCGCTGAAGATCCGGCTTCGT
ACGAAGCAGCTTTGGCCTTCTTATGCGTGCTGCTCTCCGCCATGACTATC
ATCTTTATCGGAACCGTACTCGCGCTACCCCTATCTTCCACGCACGCGGT
CGTCGGCGCGGTGGCGGGCGCAGCAATCTTGCTGAATGGTCCACGCTCCT
TGCACTGGCAGAAACTTTACCAAATCGCGGCTGCATGGGTGGTGTCGCCG
CTGTTAGGCTGCGTGTTAGGGTTCTTTTTGCTCCATCTTACAAGCCTGGC
GTTGCGAGGCAAGCGCTTCAATTACATCGTGGCACCAAGTCTAGCAGGGC
TCACAGCTGCGGCCGTTGCAGGTGTACTAACCGACTCTCTGGTGCAAATT
ACCGGTAGCGAGCATCCCTCAACTTGCGATTTCCTCACCGGTTTGACGAT
GGCATTCGCGCTCGGGTTTGTAAGTGGATGGTTGGTGGTGAATGGCGAAT
ATGAGAAGCTGGCCTCGGGAACGCTGTACGGAAATTCAGATGAGAAGTCT
GTCGAGAACCCGCTCATTGAGCCTGAGGAAGAGCCGGAAGATTCTGGTAC
CGACTATGGGATGGCCAAGTTGTTGCAACGTAAGAAAATCGCACTCACGG
AAAACTCATGGTACTTTGGAGCACTTTTGGTGACGACCGTGCCGGCATTG
TCATTCGCGCACGGAAGCAATGATGTGTCCAATGGTGTGGGGCCGTTCAT
AATGATCTTGCGCTATTATCTCATCAAAAGCAGCGACGGCAAGATAGACA
CAATAGAGCGCAGTCTTTTGTTGGGGGTGCTTTGCACCGGTGGGGTGGCA
ATCGCACTCGGGTTGAGTATCTTCGGAGCCCGGGTGATCGCCACGATTGG
AGGCAGCGGTGAAAAGTCTCTTAGCTCGAAGCCGTGGACTTTTGCCAGGG
CTTTTCCGGCGCAGTTTGCGGCGGCCTGCTCGGTGTTGGTGGCGTCGTCG
TTCGGTCTGCCTGTCTCGACGTCGCACGCTGTTGTGGGGGCGGTGGTTGG
GGTGCAGCTGGCTAGTGCGTCTCATGTGAACTGGAAAACATTGACCAACA
TTTTGATAGGGGCTGGATTAACGCCGATACTGGCGGCGATTACGTGCATC
ATTCTGCTTGCCGTGCTGCTTGTTGTGCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_147:1991281..1992663+

>Gvermi4443.t1 ID=Gvermi4443.t1|Name=Gvermi4443.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1383bp|location=Sequence derived from alignment at ScGOVlb_147:1991281..1992663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCTGACTTGTACATGCTTATCGCCACAGGGGCGTGTGGCGCGTT
TGGAATGCTTTTCGTGCTTGGTGCCAACGATGTAGCCAATTCTGTAGGAG
TTCCCATCGGGAGCGGCGCTCTCACAACGCGAATGGCCATTGTGCTAGCT
GCCGTATGCAACATTCTGGGTGCATCACTTGCCGGCTCGCGCGTCGCCCA
GACGCTGTCAAAAGGTGTTTCCCCTTCCCTCGCTGAAGATCCGGCTTCGT
ACGAAGCAGCTTTGGCCTTCTTATGCGTGCTGCTCTCCGCCATGACTATC
ATCTTTATCGGAACCGTACTCGCGCTACCCCTATCTTCCACGCACGCGGT
CGTCGGCGCGGTGGCGGGCGCAGCAATCTTGCTGAATGGTCCACGCTCCT
TGCACTGGCAGAAACTTTACCAAATCGCGGCTGCATGGGTGGTGTCGCCG
CTGTTAGGCTGCGTGTTAGGGTTCTTTTTGCTCCATCTTACAAGCCTGGC
GTTGCGAGGCAAGCGCTTCAATTACATCGTGGCACCAAGTCTAGCAGGGC
TCACAGCTGCGGCCGTTGCAGGTGTACTAACCGACTCTCTGGTGCAAATT
ACCGGTAGCGAGCATCCCTCAACTTGCGATTTCCTCACCGGTTTGACGAT
GGCATTCGCGCTCGGGTTTGTAAGTGGATGGTTGGTGGTGAATGGCGAAT
ATGAGAAGCTGGCCTCGGGAACGCTGTACGGAAATTCAGATGAGAAGTCT
GTCGAGAACCCGCTCATTGAGCCTGAGGAAGAGCCGGAAGATTCTGGTAC
CGACTATGGGATGGCCAAGTTGTTGCAACGTAAGAAAATCGCACTCACGG
AAAACTCATGGTACTTTGGAGCACTTTTGGTGACGACCGTGCCGGCATTG
TCATTCGCGCACGGAAGCAATGATGTGTCCAATGGTGTGGGGCCGTTCAT
AATGATCTTGCGCTATTATCTCATCAAAAGCAGCGACGGCAAGATAGACA
CAATAGAGCGCAGTCTTTTGTTGGGGGTGCTTTGCACCGGTGGGGTGGCA
ATCGCACTCGGGTTGAGTATCTTCGGAGCCCGGGTGATCGCCACGATTGG
AGGCAGCGGTGAAAAGTCTCTTAGCTCGAAGCCGTGGACTTTTGCCAGGG
CTTTTCCGGCGCAGTTTGCGGCGGCCTGCTCGGTGTTGGTGGCGTCGTCG
TTCGGTCTGCCTGTCTCGACGTCGCACGCTGTTGTGGGGGCGGTGGTTGG
GGTGCAGCTGGCTAGTGCGTCTCATGTGAACTGGAAAACATTGACCAACA
TTTTGATAGGGGCTGGATTAACGCCGATACTGGCGGCGATTACGTGCATC
ATTCTGCTTGCCGTGCTGCTTGTTGTGCTGTAG
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