Gvermi4434.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4434.t1
Unique NameGvermi4434.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1917907..1918722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4434Gvermi4434Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1917907..1918722 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4434.t1.stop1Gvermi4434.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1917907..1917909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4434.t1.CDS1Gvermi4434.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1917907..1918722 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4434.t1.exon1Gvermi4434.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1917907..1918722 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4434.t1.start1Gvermi4434.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1918720..1918722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4434.t1Gvermi4434.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1917907..1918722 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4434.t1 ID=Gvermi4434.t1|Name=Gvermi4434.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=272bp
MCSAQVWPRLYLRVILDSVRIEQTTCLLLSGATAFMTPSNTEPHISDVGR
LDAPLSSTVEVALQEALNAARSLISALQSENKQLRDVNLESQRTIKKLKE
SLTVRTRSDYKHARLSTLLGELERLQRATQKPQALQSFLPDATIARLARA
VHEEQREPSRRERRNTNGQHCLQLLLGATLHCDDESAILIDMVNPDNKNR
LAFELRWDQVHIEYTRKCAQFSGETPELAQEEGMHFEVSQGPHFLKELLN
CMYPIKASPSQSPQHTEADTL*
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spliced messenger RNA

>Gvermi4434.t1 ID=Gvermi4434.t1|Name=Gvermi4434.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_147:1917907..1918722- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAGTGCCCAAGTCTGGCCGCGATTGTATCTGCGCGTGATCCTTGA
CTCAGTCCGGATTGAACAGACGACCTGCCTGCTTCTCAGCGGCGCTACAG
CGTTCATGACTCCGTCCAACACGGAGCCACATATCTCTGATGTAGGGCGT
TTAGATGCCCCGCTTTCGTCAACCGTCGAGGTAGCGCTTCAAGAGGCGCT
CAACGCTGCTCGAAGCCTCATATCCGCCCTCCAAAGCGAGAATAAGCAGC
TTCGAGATGTCAATCTCGAATCCCAACGCACCATAAAAAAACTCAAGGAA
AGCCTCACGGTACGCACTCGTTCCGACTACAAGCACGCACGTCTATCCAC
TCTCCTCGGCGAGCTGGAACGCTTGCAGCGGGCAACTCAAAAGCCACAAG
CGCTGCAAAGCTTTTTACCCGATGCTACCATTGCACGATTGGCCAGGGCC
GTTCACGAGGAGCAAAGGGAACCATCGCGCCGGGAAAGACGTAATACAAA
CGGACAACATTGTTTACAACTTTTGTTGGGTGCTACTCTACACTGTGACG
ATGAATCAGCGATTCTCATCGATATGGTTAATCCAGATAACAAAAACAGA
TTAGCTTTTGAGCTTCGATGGGACCAAGTCCACATCGAGTACACAAGAAA
GTGTGCTCAATTTTCCGGAGAGACTCCTGAGCTTGCGCAAGAGGAAGGAA
TGCACTTTGAGGTGTCACAGGGTCCTCACTTTTTGAAGGAGCTTCTCAAT
TGCATGTACCCAATAAAAGCAAGTCCGTCGCAATCTCCGCAACATACAGA
AGCGGATACACTCTGA
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protein sequence of Gvermi4434.t1

>Gvermi4434.t1 ID=Gvermi4434.t1|Name=Gvermi4434.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=272bp
MCSAQVWPRLYLRVILDSVRIEQTTCLLLSGATAFMTPSNTEPHISDVGR
LDAPLSSTVEVALQEALNAARSLISALQSENKQLRDVNLESQRTIKKLKE
SLTVRTRSDYKHARLSTLLGELERLQRATQKPQALQSFLPDATIARLARA
VHEEQREPSRRERRNTNGQHCLQLLLGATLHCDDESAILIDMVNPDNKNR
LAFELRWDQVHIEYTRKCAQFSGETPELAQEEGMHFEVSQGPHFLKELLN
CMYPIKASPSQSPQHTEADTL*
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mRNA from alignment at ScGOVlb_147:1917907..1918722-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4434.t1 ID=Gvermi4434.t1|Name=Gvermi4434.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_147:1917907..1918722- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCAGTGCCCAAGTCTGGCCGCGATTGTATCTGCGCGTGATCCTTGA
CTCAGTCCGGATTGAACAGACGACCTGCCTGCTTCTCAGCGGCGCTACAG
CGTTCATGACTCCGTCCAACACGGAGCCACATATCTCTGATGTAGGGCGT
TTAGATGCCCCGCTTTCGTCAACCGTCGAGGTAGCGCTTCAAGAGGCGCT
CAACGCTGCTCGAAGCCTCATATCCGCCCTCCAAAGCGAGAATAAGCAGC
TTCGAGATGTCAATCTCGAATCCCAACGCACCATAAAAAAACTCAAGGAA
AGCCTCACGGTACGCACTCGTTCCGACTACAAGCACGCACGTCTATCCAC
TCTCCTCGGCGAGCTGGAACGCTTGCAGCGGGCAACTCAAAAGCCACAAG
CGCTGCAAAGCTTTTTACCCGATGCTACCATTGCACGATTGGCCAGGGCC
GTTCACGAGGAGCAAAGGGAACCATCGCGCCGGGAAAGACGTAATACAAA
CGGACAACATTGTTTACAACTTTTGTTGGGTGCTACTCTACACTGTGACG
ATGAATCAGCGATTCTCATCGATATGGTTAATCCAGATAACAAAAACAGA
TTAGCTTTTGAGCTTCGATGGGACCAAGTCCACATCGAGTACACAAGAAA
GTGTGCTCAATTTTCCGGAGAGACTCCTGAGCTTGCGCAAGAGGAAGGAA
TGCACTTTGAGGTGTCACAGGGTCCTCACTTTTTGAAGGAGCTTCTCAAT
TGCATGTACCCAATAAAAGCAAGTCCGTCGCAATCTCCGCAACATACAGA
AGCGGATACACTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_147:1917907..1918722-

>Gvermi4434.t1 ID=Gvermi4434.t1|Name=Gvermi4434.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=816bp|location=Sequence derived from alignment at ScGOVlb_147:1917907..1918722- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCAGTGCCCAAGTCTGGCCGCGATTGTATCTGCGCGTGATCCTTGA
CTCAGTCCGGATTGAACAGACGACCTGCCTGCTTCTCAGCGGCGCTACAG
CGTTCATGACTCCGTCCAACACGGAGCCACATATCTCTGATGTAGGGCGT
TTAGATGCCCCGCTTTCGTCAACCGTCGAGGTAGCGCTTCAAGAGGCGCT
CAACGCTGCTCGAAGCCTCATATCCGCCCTCCAAAGCGAGAATAAGCAGC
TTCGAGATGTCAATCTCGAATCCCAACGCACCATAAAAAAACTCAAGGAA
AGCCTCACGGTACGCACTCGTTCCGACTACAAGCACGCACGTCTATCCAC
TCTCCTCGGCGAGCTGGAACGCTTGCAGCGGGCAACTCAAAAGCCACAAG
CGCTGCAAAGCTTTTTACCCGATGCTACCATTGCACGATTGGCCAGGGCC
GTTCACGAGGAGCAAAGGGAACCATCGCGCCGGGAAAGACGTAATACAAA
CGGACAACATTGTTTACAACTTTTGTTGGGTGCTACTCTACACTGTGACG
ATGAATCAGCGATTCTCATCGATATGGTTAATCCAGATAACAAAAACAGA
TTAGCTTTTGAGCTTCGATGGGACCAAGTCCACATCGAGTACACAAGAAA
GTGTGCTCAATTTTCCGGAGAGACTCCTGAGCTTGCGCAAGAGGAAGGAA
TGCACTTTGAGGTGTCACAGGGTCCTCACTTTTTGAAGGAGCTTCTCAAT
TGCATGTACCCAATAAAAGCAAGTCCGTCGCAATCTCCGCAACATACAGA
AGCGGATACACTCTGA
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