Gvermi4408.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4408.t1
Unique NameGvermi4408.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1557633..1559273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_03517T0
PFAMsC2
Max annot lvl4751|Fungi
Evalue8.45e-35
EggNOG OGs2BVDY@1|root,2S261@2759|Eukaryota,39KWF@33154|Opisthokonta,3Q5A2@4751|Fungi
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4408Gvermi4408Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1557633..1559273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4408.t1.stop1Gvermi4408.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1557633..1557635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4408.t1.CDS1Gvermi4408.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1557633..1559273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4408.t1.exon1Gvermi4408.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1557633..1559273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4408.t1.start1Gvermi4408.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1559271..1559273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4408.t1Gvermi4408.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1557633..1559273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4408.t1 ID=Gvermi4408.t1|Name=Gvermi4408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=547bp
MPTKDVEVRLMGACGLKAVNRVGRTSDPYAVLQVVRTKKTHTSRVCLNNV
NPTWYQCFKFNDVNPSDVLAINLFDKNHVKSDILIGTAFISIGHALSHAS
AVVSQAAFEASQSAPSFSSPQYSHTSDSFHVPSDAIPPPPHRSSIPPASI
PPSSYPPPDSSPATASFDTPRSTPSTSSISSADAPSYYRPSPSDTHQPFM
PNLPNEAGIRNFPQNHAPLEQTPALADAPTQRAMTMTYDIAPQGSISLLV
APASVADLCTTVPPKSYKRFQVNKTLEQIASMHSRPSESHSGLSSLGQHV
GKIMKNGLERAKPLQTAIHSVQPIHSVFQEHSTWKISMLGVLDVFQSKRH
GWNRSYPAAQKIFQGPSSVVAKQIVKLQHAYLYGGAVSVKPLQNLREGLQ
EVRGSILDGRDFCEVLDYGHRRGKPRLFTYVLMPERLYLAETGAEFFRDM
MSKHAMHSSASPEVVYAGELQFVVTGYGTSNPKAKLIIDNNSGTYTPGKE
DLPKVAEVFRRNFPDLEVLALDFRDPYLSTLRIQLPPTNLQEETIY*
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spliced messenger RNA

>Gvermi4408.t1 ID=Gvermi4408.t1|Name=Gvermi4408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_147:1557633..1559273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCAAAGACGTTGAAGTGCGCCTCATGGGCGCCTGCGGCTTGAA
GGCCGTCAACAGGGTCGGCAGAACCTCCGACCCCTACGCCGTTTTGCAGG
TCGTGCGCACCAAGAAGACACACACCTCGCGTGTCTGTCTCAACAACGTT
AATCCAACCTGGTACCAATGCTTCAAGTTTAATGACGTCAATCCAAGCGA
TGTGTTGGCTATAAACCTCTTCGATAAGAACCACGTCAAAAGCGACATCC
TAATCGGAACCGCCTTCATCTCCATCGGCCACGCCTTATCGCACGCTTCC
GCAGTCGTGTCGCAAGCTGCCTTTGAGGCCTCTCAATCCGCCCCCTCCTT
CAGCTCCCCGCAATATTCACACACTTCCGATTCGTTTCACGTTCCCTCCG
ACGCCATTCCCCCCCCTCCCCATCGCTCCTCCATTCCGCCCGCCTCAATC
CCGCCTTCCAGCTACCCTCCGCCGGACTCCTCACCTGCCACGGCTTCGTT
CGATACCCCACGCTCAACCCCATCCACATCAAGTATTTCTTCAGCAGATG
CGCCATCATATTACCGTCCTTCCCCAAGCGATACCCACCAACCTTTCATG
CCCAATCTACCAAATGAAGCGGGCATACGCAACTTTCCGCAAAACCATGC
GCCTTTGGAACAAACCCCGGCCCTCGCGGATGCCCCTACGCAGCGCGCTA
TGACCATGACCTACGACATTGCCCCGCAAGGTTCCATCTCGCTTCTTGTC
GCCCCGGCCAGTGTCGCGGACTTGTGCACCACGGTTCCACCAAAATCATA
CAAACGCTTCCAGGTCAACAAAACTCTCGAGCAAATTGCCAGCATGCATT
CCAGACCGTCGGAAAGTCATTCTGGGCTCAGCTCACTTGGCCAGCATGTC
GGCAAGATCATGAAGAACGGACTTGAGAGGGCAAAGCCGCTGCAAACTGC
CATCCACTCTGTGCAGCCCATTCACTCTGTGTTTCAAGAGCACTCCACCT
GGAAGATCTCAATGCTCGGAGTCTTGGACGTATTTCAAAGTAAACGCCAC
GGATGGAATCGCTCGTATCCAGCTGCGCAAAAAATCTTCCAGGGCCCGAG
CTCTGTTGTGGCAAAGCAAATCGTCAAGTTGCAACATGCATATCTCTACG
GCGGTGCAGTTTCGGTCAAACCATTGCAGAATCTGAGAGAGGGTTTGCAA
GAGGTACGCGGCAGCATACTTGACGGTCGCGACTTCTGCGAGGTGCTTGA
TTACGGCCATCGGCGGGGCAAGCCACGTCTATTTACGTACGTGCTGATGC
CTGAAAGACTGTACCTGGCCGAAACAGGGGCAGAGTTCTTCCGCGATATG
ATGTCAAAGCATGCGATGCACTCGTCAGCCAGTCCCGAAGTAGTCTACGC
CGGAGAGCTTCAATTTGTTGTTACCGGCTATGGCACCAGCAACCCCAAGG
CCAAGTTAATAATCGACAACAACTCCGGTACCTACACGCCAGGCAAGGAA
GACCTGCCGAAGGTTGCGGAAGTGTTCCGTCGAAACTTCCCAGATCTAGA
GGTGCTTGCACTTGATTTCCGAGATCCCTACTTGAGTACACTGAGAATTC
AACTGCCTCCTACCAACCTGCAAGAAGAAACCATTTACTAG
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protein sequence of Gvermi4408.t1

>Gvermi4408.t1 ID=Gvermi4408.t1|Name=Gvermi4408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=547bp
MPTKDVEVRLMGACGLKAVNRVGRTSDPYAVLQVVRTKKTHTSRVCLNNV
NPTWYQCFKFNDVNPSDVLAINLFDKNHVKSDILIGTAFISIGHALSHAS
AVVSQAAFEASQSAPSFSSPQYSHTSDSFHVPSDAIPPPPHRSSIPPASI
PPSSYPPPDSSPATASFDTPRSTPSTSSISSADAPSYYRPSPSDTHQPFM
PNLPNEAGIRNFPQNHAPLEQTPALADAPTQRAMTMTYDIAPQGSISLLV
APASVADLCTTVPPKSYKRFQVNKTLEQIASMHSRPSESHSGLSSLGQHV
GKIMKNGLERAKPLQTAIHSVQPIHSVFQEHSTWKISMLGVLDVFQSKRH
GWNRSYPAAQKIFQGPSSVVAKQIVKLQHAYLYGGAVSVKPLQNLREGLQ
EVRGSILDGRDFCEVLDYGHRRGKPRLFTYVLMPERLYLAETGAEFFRDM
MSKHAMHSSASPEVVYAGELQFVVTGYGTSNPKAKLIIDNNSGTYTPGKE
DLPKVAEVFRRNFPDLEVLALDFRDPYLSTLRIQLPPTNLQEETIY*
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mRNA from alignment at ScGOVlb_147:1557633..1559273-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4408.t1 ID=Gvermi4408.t1|Name=Gvermi4408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_147:1557633..1559273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCAAAGACGTTGAAGTGCGCCTCATGGGCGCCTGCGGCTTGAA
GGCCGTCAACAGGGTCGGCAGAACCTCCGACCCCTACGCCGTTTTGCAGG
TCGTGCGCACCAAGAAGACACACACCTCGCGTGTCTGTCTCAACAACGTT
AATCCAACCTGGTACCAATGCTTCAAGTTTAATGACGTCAATCCAAGCGA
TGTGTTGGCTATAAACCTCTTCGATAAGAACCACGTCAAAAGCGACATCC
TAATCGGAACCGCCTTCATCTCCATCGGCCACGCCTTATCGCACGCTTCC
GCAGTCGTGTCGCAAGCTGCCTTTGAGGCCTCTCAATCCGCCCCCTCCTT
CAGCTCCCCGCAATATTCACACACTTCCGATTCGTTTCACGTTCCCTCCG
ACGCCATTCCCCCCCCTCCCCATCGCTCCTCCATTCCGCCCGCCTCAATC
CCGCCTTCCAGCTACCCTCCGCCGGACTCCTCACCTGCCACGGCTTCGTT
CGATACCCCACGCTCAACCCCATCCACATCAAGTATTTCTTCAGCAGATG
CGCCATCATATTACCGTCCTTCCCCAAGCGATACCCACCAACCTTTCATG
CCCAATCTACCAAATGAAGCGGGCATACGCAACTTTCCGCAAAACCATGC
GCCTTTGGAACAAACCCCGGCCCTCGCGGATGCCCCTACGCAGCGCGCTA
TGACCATGACCTACGACATTGCCCCGCAAGGTTCCATCTCGCTTCTTGTC
GCCCCGGCCAGTGTCGCGGACTTGTGCACCACGGTTCCACCAAAATCATA
CAAACGCTTCCAGGTCAACAAAACTCTCGAGCAAATTGCCAGCATGCATT
CCAGACCGTCGGAAAGTCATTCTGGGCTCAGCTCACTTGGCCAGCATGTC
GGCAAGATCATGAAGAACGGACTTGAGAGGGCAAAGCCGCTGCAAACTGC
CATCCACTCTGTGCAGCCCATTCACTCTGTGTTTCAAGAGCACTCCACCT
GGAAGATCTCAATGCTCGGAGTCTTGGACGTATTTCAAAGTAAACGCCAC
GGATGGAATCGCTCGTATCCAGCTGCGCAAAAAATCTTCCAGGGCCCGAG
CTCTGTTGTGGCAAAGCAAATCGTCAAGTTGCAACATGCATATCTCTACG
GCGGTGCAGTTTCGGTCAAACCATTGCAGAATCTGAGAGAGGGTTTGCAA
GAGGTACGCGGCAGCATACTTGACGGTCGCGACTTCTGCGAGGTGCTTGA
TTACGGCCATCGGCGGGGCAAGCCACGTCTATTTACGTACGTGCTGATGC
CTGAAAGACTGTACCTGGCCGAAACAGGGGCAGAGTTCTTCCGCGATATG
ATGTCAAAGCATGCGATGCACTCGTCAGCCAGTCCCGAAGTAGTCTACGC
CGGAGAGCTTCAATTTGTTGTTACCGGCTATGGCACCAGCAACCCCAAGG
CCAAGTTAATAATCGACAACAACTCCGGTACCTACACGCCAGGCAAGGAA
GACCTGCCGAAGGTTGCGGAAGTGTTCCGTCGAAACTTCCCAGATCTAGA
GGTGCTTGCACTTGATTTCCGAGATCCCTACTTGAGTACACTGAGAATTC
AACTGCCTCCTACCAACCTGCAAGAAGAAACCATTTACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_147:1557633..1559273-

>Gvermi4408.t1 ID=Gvermi4408.t1|Name=Gvermi4408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1641bp|location=Sequence derived from alignment at ScGOVlb_147:1557633..1559273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCAAAGACGTTGAAGTGCGCCTCATGGGCGCCTGCGGCTTGAA
GGCCGTCAACAGGGTCGGCAGAACCTCCGACCCCTACGCCGTTTTGCAGG
TCGTGCGCACCAAGAAGACACACACCTCGCGTGTCTGTCTCAACAACGTT
AATCCAACCTGGTACCAATGCTTCAAGTTTAATGACGTCAATCCAAGCGA
TGTGTTGGCTATAAACCTCTTCGATAAGAACCACGTCAAAAGCGACATCC
TAATCGGAACCGCCTTCATCTCCATCGGCCACGCCTTATCGCACGCTTCC
GCAGTCGTGTCGCAAGCTGCCTTTGAGGCCTCTCAATCCGCCCCCTCCTT
CAGCTCCCCGCAATATTCACACACTTCCGATTCGTTTCACGTTCCCTCCG
ACGCCATTCCCCCCCCTCCCCATCGCTCCTCCATTCCGCCCGCCTCAATC
CCGCCTTCCAGCTACCCTCCGCCGGACTCCTCACCTGCCACGGCTTCGTT
CGATACCCCACGCTCAACCCCATCCACATCAAGTATTTCTTCAGCAGATG
CGCCATCATATTACCGTCCTTCCCCAAGCGATACCCACCAACCTTTCATG
CCCAATCTACCAAATGAAGCGGGCATACGCAACTTTCCGCAAAACCATGC
GCCTTTGGAACAAACCCCGGCCCTCGCGGATGCCCCTACGCAGCGCGCTA
TGACCATGACCTACGACATTGCCCCGCAAGGTTCCATCTCGCTTCTTGTC
GCCCCGGCCAGTGTCGCGGACTTGTGCACCACGGTTCCACCAAAATCATA
CAAACGCTTCCAGGTCAACAAAACTCTCGAGCAAATTGCCAGCATGCATT
CCAGACCGTCGGAAAGTCATTCTGGGCTCAGCTCACTTGGCCAGCATGTC
GGCAAGATCATGAAGAACGGACTTGAGAGGGCAAAGCCGCTGCAAACTGC
CATCCACTCTGTGCAGCCCATTCACTCTGTGTTTCAAGAGCACTCCACCT
GGAAGATCTCAATGCTCGGAGTCTTGGACGTATTTCAAAGTAAACGCCAC
GGATGGAATCGCTCGTATCCAGCTGCGCAAAAAATCTTCCAGGGCCCGAG
CTCTGTTGTGGCAAAGCAAATCGTCAAGTTGCAACATGCATATCTCTACG
GCGGTGCAGTTTCGGTCAAACCATTGCAGAATCTGAGAGAGGGTTTGCAA
GAGGTACGCGGCAGCATACTTGACGGTCGCGACTTCTGCGAGGTGCTTGA
TTACGGCCATCGGCGGGGCAAGCCACGTCTATTTACGTACGTGCTGATGC
CTGAAAGACTGTACCTGGCCGAAACAGGGGCAGAGTTCTTCCGCGATATG
ATGTCAAAGCATGCGATGCACTCGTCAGCCAGTCCCGAAGTAGTCTACGC
CGGAGAGCTTCAATTTGTTGTTACCGGCTATGGCACCAGCAACCCCAAGG
CCAAGTTAATAATCGACAACAACTCCGGTACCTACACGCCAGGCAAGGAA
GACCTGCCGAAGGTTGCGGAAGTGTTCCGTCGAAACTTCCCAGATCTAGA
GGTGCTTGCACTTGATTTCCGAGATCCCTACTTGAGTACACTGAGAATTC
AACTGCCTCCTACCAACCTGCAAGAAGAAACCATTTACTAG
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