Gvermi4391.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4391.t1
Unique NameGvermi4391.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1516295..1517014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA064CT
PFAMsCPP1-like
Max annot lvl2759|Eukaryota
Evalue1.93e-45
EggNOG OGs2E785@1|root,2SDV7@2759|Eukaryota
DescriptionPfam:DUF3353
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4391Gvermi4391Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1516295..1517014 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4391.t1.start1Gvermi4391.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1516295..1516297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4391.t1.CDS1Gvermi4391.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1516295..1517014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4391.t1.exon1Gvermi4391.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1516295..1517014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4391.t1.stop1Gvermi4391.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1517012..1517014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4391.t1Gvermi4391.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1516295..1517014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4391.t1 ID=Gvermi4391.t1|Name=Gvermi4391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=240bp
MLFGFGSKKKSAPNKGRSGTNPYRALGVGEDATYEEVESAVKSLSIKYAD
NPKKLMMLDVYKDQIFEDKLQKRMSGALMPKIKESPYERKPQPKKRFVMP
AWAQGIFKLPDFPYFKRTGIIMGIFFALGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEIRPVKHRIVLKTILINLGVAAVFFGLAQLYM
LYLPLPLWAPPDAFVNAAVVIGLWMSCLLFMAQDPNDLY*
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spliced messenger RNA

>Gvermi4391.t1 ID=Gvermi4391.t1|Name=Gvermi4391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_147:1516295..1517014+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTTGGTTTCGGTAGCAAGAAAAAGAGCGCCCCGAACAAGGGCAG
GTCAGGCACAAATCCATACCGTGCATTAGGTGTCGGTGAGGATGCTACAT
ATGAAGAAGTCGAATCAGCTGTGAAAAGTCTATCCATCAAGTATGCAGAC
AACCCGAAGAAACTCATGATGCTCGACGTATACAAAGATCAAATCTTCGA
GGACAAGCTGCAAAAGCGCATGTCTGGTGCGCTCATGCCGAAAATCAAAG
AGTCTCCGTACGAGAGGAAACCGCAACCGAAGAAGAGGTTTGTCATGCCC
GCCTGGGCGCAAGGCATTTTTAAACTTCCCGACTTTCCGTACTTCAAACG
TACGGGTATCATCATGGGGATATTTTTCGCTCTTGGATTTGTTACCCCGA
CACTGGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGGGGCCTCCCAGAACCTGTGCGAGACGACTACGGTGCATA
CGGAGAGATTCGCCCAGTCAAACATCGTATCGTGCTCAAAACTATATTGA
TCAACCTTGGGGTTGCCGCTGTATTTTTCGGATTAGCACAATTGTACATG
CTCTACCTTCCATTGCCACTGTGGGCACCGCCCGATGCCTTTGTCAACGC
TGCGGTAGTGATTGGTTTATGGATGTCTTGTTTATTGTTCATGGCTCAAG
ATCCAAACGACTTGTACTAG
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protein sequence of Gvermi4391.t1

>Gvermi4391.t1 ID=Gvermi4391.t1|Name=Gvermi4391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MLFGFGSKKKSAPNKGRSGTNPYRALGVGEDATYEEVESAVKSLSIKYAD
NPKKLMMLDVYKDQIFEDKLQKRMSGALMPKIKESPYERKPQPKKRFVMP
AWAQGIFKLPDFPYFKRTGIIMGIFFALGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEIRPVKHRIVLKTILINLGVAAVFFGLAQLYM
LYLPLPLWAPPDAFVNAAVVIGLWMSCLLFMAQDPNDLY*
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mRNA from alignment at ScGOVlb_147:1516295..1517014+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4391.t1 ID=Gvermi4391.t1|Name=Gvermi4391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_147:1516295..1517014+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTTTGGTTTCGGTAGCAAGAAAAAGAGCGCCCCGAACAAGGGCAG
GTCAGGCACAAATCCATACCGTGCATTAGGTGTCGGTGAGGATGCTACAT
ATGAAGAAGTCGAATCAGCTGTGAAAAGTCTATCCATCAAGTATGCAGAC
AACCCGAAGAAACTCATGATGCTCGACGTATACAAAGATCAAATCTTCGA
GGACAAGCTGCAAAAGCGCATGTCTGGTGCGCTCATGCCGAAAATCAAAG
AGTCTCCGTACGAGAGGAAACCGCAACCGAAGAAGAGGTTTGTCATGCCC
GCCTGGGCGCAAGGCATTTTTAAACTTCCCGACTTTCCGTACTTCAAACG
TACGGGTATCATCATGGGGATATTTTTCGCTCTTGGATTTGTTACCCCGA
CACTGGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGGGGCCTCCCAGAACCTGTGCGAGACGACTACGGTGCATA
CGGAGAGATTCGCCCAGTCAAACATCGTATCGTGCTCAAAACTATATTGA
TCAACCTTGGGGTTGCCGCTGTATTTTTCGGATTAGCACAATTGTACATG
CTCTACCTTCCATTGCCACTGTGGGCACCGCCCGATGCCTTTGTCAACGC
TGCGGTAGTGATTGGTTTATGGATGTCTTGTTTATTGTTCATGGCTCAAG
ATCCAAACGACTTGTACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_147:1516295..1517014+

>Gvermi4391.t1 ID=Gvermi4391.t1|Name=Gvermi4391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=720bp|location=Sequence derived from alignment at ScGOVlb_147:1516295..1517014+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTTTGGTTTCGGTAGCAAGAAAAAGAGCGCCCCGAACAAGGGCAG
GTCAGGCACAAATCCATACCGTGCATTAGGTGTCGGTGAGGATGCTACAT
ATGAAGAAGTCGAATCAGCTGTGAAAAGTCTATCCATCAAGTATGCAGAC
AACCCGAAGAAACTCATGATGCTCGACGTATACAAAGATCAAATCTTCGA
GGACAAGCTGCAAAAGCGCATGTCTGGTGCGCTCATGCCGAAAATCAAAG
AGTCTCCGTACGAGAGGAAACCGCAACCGAAGAAGAGGTTTGTCATGCCC
GCCTGGGCGCAAGGCATTTTTAAACTTCCCGACTTTCCGTACTTCAAACG
TACGGGTATCATCATGGGGATATTTTTCGCTCTTGGATTTGTTACCCCGA
CACTGGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGGGGCCTCCCAGAACCTGTGCGAGACGACTACGGTGCATA
CGGAGAGATTCGCCCAGTCAAACATCGTATCGTGCTCAAAACTATATTGA
TCAACCTTGGGGTTGCCGCTGTATTTTTCGGATTAGCACAATTGTACATG
CTCTACCTTCCATTGCCACTGTGGGCACCGCCCGATGCCTTTGTCAACGC
TGCGGTAGTGATTGGTTTATGGATGTCTTGTTTATTGTTCATGGCTCAAG
ATCCAAACGACTTGTACTAG
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