Gvermi4294.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi4294.t1
Unique Name	Gvermi4294.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	723

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_147	contig	ScGOVlb_147:1066604..1068772 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo157214
PFAMs	Peptidase_M3
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K01410
Evalue	8.65e-147
EggNOG OGs	COG0339@1\|root,KOG2090@2759\|Eukaryota,3QD9B@4776\|Peronosporales
EC	3.4.24.59
Description	Peptidase family M3
COG category	O
BRITE	ko00000,ko01000,ko01002,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi4294	Gvermi4294	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_147 1066604..1068772 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4294.t1.stop1	Gvermi4294.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_147 1066604..1066606 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4294.t1.CDS1	Gvermi4294.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_147 1066604..1068772 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4294.t1.exon1	Gvermi4294.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_147 1066604..1068772 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4294.t1.start1	Gvermi4294.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_147 1068770..1068772 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4294.t1	Gvermi4294.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_147 1066604..1068772 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_147:1066604..1068772-
coding sequence from alignment at ScGOVlb_147:1066604..1068772-

mRNA sequence

>Gvermi4294.t1 ID=Gvermi4294.t1|Name=Gvermi4294.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp
MLALRNVRQSVLRRKHAATFFSKSKSAQEEDKAGYFGLKGLHRPSDWHHL
GNQCIDDCLQLADSIRSQRKEPTVKVLQTFDDLSDRLCAVLDVAELCRNV
HPEPDFVESANEAFLNVSSVIQHLNADKSLYEPLSELYERHISQTRNGFR
TGTHLSGEDLIMVKSLKQDFERGGINLEQSEKMRLIQLQDEVTTACAKFT
STPLEHSTIMQLPYNKLRSVPNHLLKSLKRAPGNPDHVLIPLNSSNIHFL
LKWVPDSNIREKVYRLSHSVQRGTKDHYLATILENRLQIAKMLGHDSYAD
LLFADRLASSPSDVSEFLEALSALIRRPALNDRTAIEMEKMQREPHLACN
GSVKIHGWDRSFYIGRLKAENFDISSNQIAQYFPLSACLYGLGYLLHATF
GVHMVRCNANEGEVWHDDVQKLQLKDSHGELLGQIFLDLYPREGKYGHAA
HFSVTCGRQPPNGADYQIPTVALVCNFGRDDCSGERLLTVSEYETFFHEF
GHSLHSIFSRTKYQHLSGTRVTTDFVEVPSHLFEHFAWHPALISKFAHHH
RTGEPMPTKLLRSLCASRNGFISTDTQMQLLFSAMDLEFHGTHPPVSDTT
EAFADLQQKLTVYEPDEDVSVPTSFHHFVGYGAGYYTYVFARVLSAQLWS
KLFGRDPFSREGGASLRHELLAYGGARDPGALLRSIIDGEINCEAFLSNL
GISEREGHKRLRIPIRSGSQDD*

spliced messenger RNA

>Gvermi4294.t1 ID=Gvermi4294.t1|Name=Gvermi4294.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2169bp|location=Sequence derived from alignment at ScGOVlb_147:1066604..1068772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCACTCAGAAATGTTCGACAGAGCGTTCTGCGTCGTAAACATGC
TGCGACCTTCTTTTCAAAATCAAAAAGTGCCCAGGAAGAGGATAAGGCTG
GCTATTTTGGATTGAAAGGCCTGCACCGCCCGTCTGATTGGCATCATTTG
GGAAATCAGTGTATTGATGACTGCTTGCAACTTGCCGATAGCATTCGGTC
ACAACGCAAGGAGCCCACGGTTAAGGTGCTCCAAACATTTGATGACTTAT
CTGACAGATTATGCGCAGTGTTGGACGTCGCCGAACTATGTCGAAACGTG
CACCCTGAGCCAGACTTTGTAGAATCCGCCAATGAAGCGTTCCTAAATGT
GTCATCTGTCATTCAACACCTCAACGCTGACAAGTCTCTCTACGAACCCC
TTAGCGAATTATATGAACGTCACATATCTCAGACTCGTAATGGATTTCGG
ACGGGAACTCACCTGAGTGGTGAAGATTTAATAATGGTGAAGTCTTTGAA
ACAAGACTTCGAACGCGGGGGAATTAACTTGGAGCAATCTGAAAAGATGA
GACTAATCCAATTGCAAGACGAAGTGACGACCGCTTGTGCAAAGTTCACG
TCAACACCGCTCGAACATTCAACCATCATGCAGTTACCATACAACAAACT
GCGCTCAGTTCCAAACCATCTTCTGAAATCCCTAAAACGAGCACCCGGAA
ATCCTGATCATGTCTTGATCCCGTTAAACAGTTCAAACATCCACTTTTTG
TTGAAGTGGGTTCCAGATTCCAATATTAGGGAAAAAGTGTATCGCTTAAG
CCATAGCGTACAGAGAGGGACAAAGGATCACTATCTTGCAACTATTCTCG
AGAATCGCTTGCAAATAGCCAAAATGCTAGGGCATGACAGCTATGCTGAC
CTCCTTTTTGCAGATCGCCTCGCTTCTTCTCCGTCTGATGTCTCAGAGTT
CTTGGAGGCCTTGTCGGCTCTTATTCGTCGGCCAGCATTGAACGATAGAA
CAGCAATAGAAATGGAGAAAATGCAGCGTGAGCCTCATCTGGCATGCAAT
GGATCCGTTAAGATCCATGGATGGGACCGAAGCTTCTACATTGGTAGACT
GAAAGCAGAGAACTTTGATATATCTTCCAATCAAATTGCGCAGTACTTTC
CTCTTTCAGCCTGCTTGTATGGGTTAGGATATCTCCTTCATGCGACCTTT
GGAGTTCATATGGTTCGATGCAATGCGAACGAGGGCGAAGTGTGGCATGA
TGACGTCCAAAAACTTCAACTCAAGGACTCACATGGAGAGCTTTTGGGGC
AAATATTTTTAGACCTATATCCTCGTGAGGGCAAATACGGCCATGCTGCT
CACTTTTCCGTAACTTGCGGACGTCAGCCTCCGAATGGAGCAGACTATCA
AATTCCAACAGTCGCTCTTGTGTGCAACTTCGGTAGAGACGATTGCAGTG
GGGAAAGGTTGCTGACGGTGTCGGAGTATGAGACATTCTTCCATGAGTTT
GGGCATTCTCTTCACTCTATATTTTCACGAACAAAGTACCAGCATCTATC
CGGTACGCGTGTGACAACAGATTTCGTTGAAGTCCCATCTCATTTGTTTG
AGCATTTTGCTTGGCATCCTGCTCTGATCTCCAAATTTGCACATCATCAC
CGAACCGGCGAACCGATGCCTACCAAGCTGCTTCGTTCTCTTTGCGCTTC
AAGAAACGGGTTTATTTCCACTGATACTCAAATGCAGCTGCTGTTCTCGG
CTATGGATCTAGAATTCCATGGCACACATCCACCGGTGAGCGACACAACT
GAGGCGTTCGCAGACCTACAGCAAAAATTGACAGTGTATGAACCCGATGA
GGATGTATCAGTCCCAACCTCGTTTCATCATTTTGTTGGCTACGGAGCCG
GGTACTACACCTATGTTTTTGCGCGAGTGCTCTCTGCGCAGTTATGGAGC
AAGCTCTTTGGGCGCGATCCATTCTCGCGGGAAGGCGGTGCTAGTCTGAG
ACATGAGCTCTTGGCCTATGGAGGCGCTCGCGATCCAGGAGCGTTGCTGC
GAAGTATAATAGATGGTGAAATCAACTGCGAAGCGTTCCTTTCGAACCTC
GGGATAAGCGAGAGAGAAGGTCATAAGAGGCTACGGATTCCGATACGAAG
TGGCTCGCAAGACGATTGA

protein sequence of Gvermi4294.t1

>Gvermi4294.t1 ID=Gvermi4294.t1|Name=Gvermi4294.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=723bp
MLALRNVRQSVLRRKHAATFFSKSKSAQEEDKAGYFGLKGLHRPSDWHHL
GNQCIDDCLQLADSIRSQRKEPTVKVLQTFDDLSDRLCAVLDVAELCRNV
HPEPDFVESANEAFLNVSSVIQHLNADKSLYEPLSELYERHISQTRNGFR
TGTHLSGEDLIMVKSLKQDFERGGINLEQSEKMRLIQLQDEVTTACAKFT
STPLEHSTIMQLPYNKLRSVPNHLLKSLKRAPGNPDHVLIPLNSSNIHFL
LKWVPDSNIREKVYRLSHSVQRGTKDHYLATILENRLQIAKMLGHDSYAD
LLFADRLASSPSDVSEFLEALSALIRRPALNDRTAIEMEKMQREPHLACN
GSVKIHGWDRSFYIGRLKAENFDISSNQIAQYFPLSACLYGLGYLLHATF
GVHMVRCNANEGEVWHDDVQKLQLKDSHGELLGQIFLDLYPREGKYGHAA
HFSVTCGRQPPNGADYQIPTVALVCNFGRDDCSGERLLTVSEYETFFHEF
GHSLHSIFSRTKYQHLSGTRVTTDFVEVPSHLFEHFAWHPALISKFAHHH
RTGEPMPTKLLRSLCASRNGFISTDTQMQLLFSAMDLEFHGTHPPVSDTT
EAFADLQQKLTVYEPDEDVSVPTSFHHFVGYGAGYYTYVFARVLSAQLWS
KLFGRDPFSREGGASLRHELLAYGGARDPGALLRSIIDGEINCEAFLSNL
GISEREGHKRLRIPIRSGSQDD*

mRNA from alignment at ScGOVlb_147:1066604..1068772-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi4294.t1 ID=Gvermi4294.t1|Name=Gvermi4294.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2169bp|location=Sequence derived from alignment at ScGOVlb_147:1066604..1068772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCACTCAGAAATGTTCGACAGAGCGTTCTGCGTCGTAAACATGC
TGCGACCTTCTTTTCAAAATCAAAAAGTGCCCAGGAAGAGGATAAGGCTG
GCTATTTTGGATTGAAAGGCCTGCACCGCCCGTCTGATTGGCATCATTTG
GGAAATCAGTGTATTGATGACTGCTTGCAACTTGCCGATAGCATTCGGTC
ACAACGCAAGGAGCCCACGGTTAAGGTGCTCCAAACATTTGATGACTTAT
CTGACAGATTATGCGCAGTGTTGGACGTCGCCGAACTATGTCGAAACGTG
CACCCTGAGCCAGACTTTGTAGAATCCGCCAATGAAGCGTTCCTAAATGT
GTCATCTGTCATTCAACACCTCAACGCTGACAAGTCTCTCTACGAACCCC
TTAGCGAATTATATGAACGTCACATATCTCAGACTCGTAATGGATTTCGG
ACGGGAACTCACCTGAGTGGTGAAGATTTAATAATGGTGAAGTCTTTGAA
ACAAGACTTCGAACGCGGGGGAATTAACTTGGAGCAATCTGAAAAGATGA
GACTAATCCAATTGCAAGACGAAGTGACGACCGCTTGTGCAAAGTTCACG
TCAACACCGCTCGAACATTCAACCATCATGCAGTTACCATACAACAAACT
GCGCTCAGTTCCAAACCATCTTCTGAAATCCCTAAAACGAGCACCCGGAA
ATCCTGATCATGTCTTGATCCCGTTAAACAGTTCAAACATCCACTTTTTG
TTGAAGTGGGTTCCAGATTCCAATATTAGGGAAAAAGTGTATCGCTTAAG
CCATAGCGTACAGAGAGGGACAAAGGATCACTATCTTGCAACTATTCTCG
AGAATCGCTTGCAAATAGCCAAAATGCTAGGGCATGACAGCTATGCTGAC
CTCCTTTTTGCAGATCGCCTCGCTTCTTCTCCGTCTGATGTCTCAGAGTT
CTTGGAGGCCTTGTCGGCTCTTATTCGTCGGCCAGCATTGAACGATAGAA
CAGCAATAGAAATGGAGAAAATGCAGCGTGAGCCTCATCTGGCATGCAAT
GGATCCGTTAAGATCCATGGATGGGACCGAAGCTTCTACATTGGTAGACT
GAAAGCAGAGAACTTTGATATATCTTCCAATCAAATTGCGCAGTACTTTC
CTCTTTCAGCCTGCTTGTATGGGTTAGGATATCTCCTTCATGCGACCTTT
GGAGTTCATATGGTTCGATGCAATGCGAACGAGGGCGAAGTGTGGCATGA
TGACGTCCAAAAACTTCAACTCAAGGACTCACATGGAGAGCTTTTGGGGC
AAATATTTTTAGACCTATATCCTCGTGAGGGCAAATACGGCCATGCTGCT
CACTTTTCCGTAACTTGCGGACGTCAGCCTCCGAATGGAGCAGACTATCA
AATTCCAACAGTCGCTCTTGTGTGCAACTTCGGTAGAGACGATTGCAGTG
GGGAAAGGTTGCTGACGGTGTCGGAGTATGAGACATTCTTCCATGAGTTT
GGGCATTCTCTTCACTCTATATTTTCACGAACAAAGTACCAGCATCTATC
CGGTACGCGTGTGACAACAGATTTCGTTGAAGTCCCATCTCATTTGTTTG
AGCATTTTGCTTGGCATCCTGCTCTGATCTCCAAATTTGCACATCATCAC
CGAACCGGCGAACCGATGCCTACCAAGCTGCTTCGTTCTCTTTGCGCTTC
AAGAAACGGGTTTATTTCCACTGATACTCAAATGCAGCTGCTGTTCTCGG
CTATGGATCTAGAATTCCATGGCACACATCCACCGGTGAGCGACACAACT
GAGGCGTTCGCAGACCTACAGCAAAAATTGACAGTGTATGAACCCGATGA
GGATGTATCAGTCCCAACCTCGTTTCATCATTTTGTTGGCTACGGAGCCG
GGTACTACACCTATGTTTTTGCGCGAGTGCTCTCTGCGCAGTTATGGAGC
AAGCTCTTTGGGCGCGATCCATTCTCGCGGGAAGGCGGTGCTAGTCTGAG
ACATGAGCTCTTGGCCTATGGAGGCGCTCGCGATCCAGGAGCGTTGCTGC
GAAGTATAATAGATGGTGAAATCAACTGCGAAGCGTTCCTTTCGAACCTC
GGGATAAGCGAGAGAGAAGGTCATAAGAGGCTACGGATTCCGATACGAAG
TGGCTCGCAAGACGATTGA

Coding sequence (CDS) from alignment at ScGOVlb_147:1066604..1068772-

>Gvermi4294.t1 ID=Gvermi4294.t1|Name=Gvermi4294.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2169bp|location=Sequence derived from alignment at ScGOVlb_147:1066604..1068772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCACTCAGAAATGTTCGACAGAGCGTTCTGCGTCGTAAACATGC
TGCGACCTTCTTTTCAAAATCAAAAAGTGCCCAGGAAGAGGATAAGGCTG
GCTATTTTGGATTGAAAGGCCTGCACCGCCCGTCTGATTGGCATCATTTG
GGAAATCAGTGTATTGATGACTGCTTGCAACTTGCCGATAGCATTCGGTC
ACAACGCAAGGAGCCCACGGTTAAGGTGCTCCAAACATTTGATGACTTAT
CTGACAGATTATGCGCAGTGTTGGACGTCGCCGAACTATGTCGAAACGTG
CACCCTGAGCCAGACTTTGTAGAATCCGCCAATGAAGCGTTCCTAAATGT
GTCATCTGTCATTCAACACCTCAACGCTGACAAGTCTCTCTACGAACCCC
TTAGCGAATTATATGAACGTCACATATCTCAGACTCGTAATGGATTTCGG
ACGGGAACTCACCTGAGTGGTGAAGATTTAATAATGGTGAAGTCTTTGAA
ACAAGACTTCGAACGCGGGGGAATTAACTTGGAGCAATCTGAAAAGATGA
GACTAATCCAATTGCAAGACGAAGTGACGACCGCTTGTGCAAAGTTCACG
TCAACACCGCTCGAACATTCAACCATCATGCAGTTACCATACAACAAACT
GCGCTCAGTTCCAAACCATCTTCTGAAATCCCTAAAACGAGCACCCGGAA
ATCCTGATCATGTCTTGATCCCGTTAAACAGTTCAAACATCCACTTTTTG
TTGAAGTGGGTTCCAGATTCCAATATTAGGGAAAAAGTGTATCGCTTAAG
CCATAGCGTACAGAGAGGGACAAAGGATCACTATCTTGCAACTATTCTCG
AGAATCGCTTGCAAATAGCCAAAATGCTAGGGCATGACAGCTATGCTGAC
CTCCTTTTTGCAGATCGCCTCGCTTCTTCTCCGTCTGATGTCTCAGAGTT
CTTGGAGGCCTTGTCGGCTCTTATTCGTCGGCCAGCATTGAACGATAGAA
CAGCAATAGAAATGGAGAAAATGCAGCGTGAGCCTCATCTGGCATGCAAT
GGATCCGTTAAGATCCATGGATGGGACCGAAGCTTCTACATTGGTAGACT
GAAAGCAGAGAACTTTGATATATCTTCCAATCAAATTGCGCAGTACTTTC
CTCTTTCAGCCTGCTTGTATGGGTTAGGATATCTCCTTCATGCGACCTTT
GGAGTTCATATGGTTCGATGCAATGCGAACGAGGGCGAAGTGTGGCATGA
TGACGTCCAAAAACTTCAACTCAAGGACTCACATGGAGAGCTTTTGGGGC
AAATATTTTTAGACCTATATCCTCGTGAGGGCAAATACGGCCATGCTGCT
CACTTTTCCGTAACTTGCGGACGTCAGCCTCCGAATGGAGCAGACTATCA
AATTCCAACAGTCGCTCTTGTGTGCAACTTCGGTAGAGACGATTGCAGTG
GGGAAAGGTTGCTGACGGTGTCGGAGTATGAGACATTCTTCCATGAGTTT
GGGCATTCTCTTCACTCTATATTTTCACGAACAAAGTACCAGCATCTATC
CGGTACGCGTGTGACAACAGATTTCGTTGAAGTCCCATCTCATTTGTTTG
AGCATTTTGCTTGGCATCCTGCTCTGATCTCCAAATTTGCACATCATCAC
CGAACCGGCGAACCGATGCCTACCAAGCTGCTTCGTTCTCTTTGCGCTTC
AAGAAACGGGTTTATTTCCACTGATACTCAAATGCAGCTGCTGTTCTCGG
CTATGGATCTAGAATTCCATGGCACACATCCACCGGTGAGCGACACAACT
GAGGCGTTCGCAGACCTACAGCAAAAATTGACAGTGTATGAACCCGATGA
GGATGTATCAGTCCCAACCTCGTTTCATCATTTTGTTGGCTACGGAGCCG
GGTACTACACCTATGTTTTTGCGCGAGTGCTCTCTGCGCAGTTATGGAGC
AAGCTCTTTGGGCGCGATCCATTCTCGCGGGAAGGCGGTGCTAGTCTGAG
ACATGAGCTCTTGGCCTATGGAGGCGCTCGCGATCCAGGAGCGTTGCTGC
GAAGTATAATAGATGGTGAAATCAACTGCGAAGCGTTCCTTTCGAACCTC
GGGATAAGCGAGAGAGAAGGTCATAAGAGGCTACGGATTCCGATACGAAG
TGGCTCGCAAGACGATTGA