Gvermi4291.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4291.t1
Unique NameGvermi4291.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1061696..1062311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5297.GMQ_01416T0
PFAMsTBCA
Max annot lvl4751|Fungi
KEGG koko:K17292
Evalue2.1e-11
EggNOG OGsKOG3470@1|root,KOG3470@2759|Eukaryota,3A3KE@33154|Opisthokonta,3P6UM@4751|Fungi,3VBZC@5204|Basidiomycota,2YGFJ@29000|Pucciniomycotina
DescriptionTubulin binding cofactor A
COG categoryZ
BRITEko00000,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4291Gvermi4291Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1061696..1062311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1Gvermi4291.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1061696..1062311 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1.start1Gvermi4291.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1061696..1061698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1.CDS1Gvermi4291.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1061696..1061757 +
Gvermi4291.t1.CDS2Gvermi4291.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1061840..1061942 +
Gvermi4291.t1.CDS3Gvermi4291.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1062041..1062127 +
Gvermi4291.t1.CDS4Gvermi4291.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1062216..1062311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1.exon1Gvermi4291.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1061696..1061757 +
Gvermi4291.t1.exon2Gvermi4291.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1061840..1061942 +
Gvermi4291.t1.exon3Gvermi4291.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1062041..1062127 +
Gvermi4291.t1.exon4Gvermi4291.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1062216..1062311 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1.intron1Gvermi4291.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1061758..1061839 +
Gvermi4291.t1.intron2Gvermi4291.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1061943..1062040 +
Gvermi4291.t1.intron3Gvermi4291.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1062128..1062215 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4291.t1.stop1Gvermi4291.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1062309..1062311 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4291.t1 ID=Gvermi4291.t1|Name=Gvermi4291.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=116bp
MSSASHPSLRTLKIKTAVVLRIVKELDSYYDELEDNRKKVEQIRCSDDHS
KLKQMENVLGETQCMIPDTTTRLSNAVDDLSALLDQPSTRSDLAGTQELE
SAIAAVSKASQKLQA*
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spliced messenger RNA

>Gvermi4291.t1 ID=Gvermi4291.t1|Name=Gvermi4291.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_147:1061696..1062311+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTGCGTCTCATCCCTCTCTTAGAACTCTCAAGATCAAGACAGC
AGTCGTGCTCAGAATCGTCAAGGAACTAGACTCCTACTATGACGAGCTTG
AAGACAACAGAAAGAAAGTGGAGCAAATTCGATGCAGTGATGATCATTCA
AAACTGAAGCAAATGGAAAACGTGTTGGGGGAAACCCAATGCATGATTCC
TGATACTACGACTCGCCTATCGAATGCTGTCGATGACCTATCAGCATTGT
TGGATCAGCCAAGTACTAGGAGTGATTTAGCAGGCACACAAGAACTGGAG
TCTGCTATAGCTGCCGTATCCAAAGCTTCTCAAAAATTGCAGGCTTAG
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protein sequence of Gvermi4291.t1

>Gvermi4291.t1 ID=Gvermi4291.t1|Name=Gvermi4291.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=116bp
MSSASHPSLRTLKIKTAVVLRIVKELDSYYDELEDNRKKVEQIRCSDDHS
KLKQMENVLGETQCMIPDTTTRLSNAVDDLSALLDQPSTRSDLAGTQELE
SAIAAVSKASQKLQA*
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mRNA from alignment at ScGOVlb_147:1061696..1062311+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4291.t1 ID=Gvermi4291.t1|Name=Gvermi4291.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=616bp|location=Sequence derived from alignment at ScGOVlb_147:1061696..1062311+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCTGCGTCTCATCCCTCTCTTAGAACTCTCAAGATCAAGACAGC
AGTCGTGCTCAGGTAAGCAAACCCTCTTGTACATGTTTTAAATAAAATAA
GCTGCCGCGCGCCTCAACTGACACCGCACGCTATACCTCCTCAGAATCGT
CAAGGAACTAGACTCCTACTATGACGAGCTTGAAGACAACAGAAAGAAAG
TGGAGCAAATTCGATGCAGTGATGATCATTCAAAACTGAAGCAAATGGTC
AGTCCATCTGCGCTCCATCTACGCTGTTGCTTAAACAAATTTATCCCCAC
ATCTAACGTGCGTACAAACCCTTTTTACCTCTGCAACTTCCGCAGGAAAA
CGTGTTGGGGGAAACCCAATGCATGATTCCTGATACTACGACTCGCCTAT
CGAATGCTGTCGATGACCTATCAGCATTGTTGGTATGTGAGCCAAACTCG
CCAATCTCACCCCACAGGCTGCAAAATTCTCACACATGCGCTCTGTGCAT
CTCCCGTGGCAAAACTACAGGATCAGCCAAGTACTAGGAGTGATTTAGCA
GGCACACAAGAACTGGAGTCTGCTATAGCTGCCGTATCCAAAGCTTCTCA
AAAATTGCAGGCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_147:1061696..1062311+

>Gvermi4291.t1 ID=Gvermi4291.t1|Name=Gvermi4291.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=348bp|location=Sequence derived from alignment at ScGOVlb_147:1061696..1062311+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCTGCGTCTCATCCCTCTCTTAGAACTCTCAAGATCAAGACAGC
AGTCGTGCTCAGAATCGTCAAGGAACTAGACTCCTACTATGACGAGCTTG
AAGACAACAGAAAGAAAGTGGAGCAAATTCGATGCAGTGATGATCATTCA
AAACTGAAGCAAATGGAAAACGTGTTGGGGGAAACCCAATGCATGATTCC
TGATACTACGACTCGCCTATCGAATGCTGTCGATGACCTATCAGCATTGT
TGGATCAGCCAAGTACTAGGAGTGATTTAGCAGGCACACAAGAACTGGAG
TCTGCTATAGCTGCCGTATCCAAAGCTTCTCAAAAATTGCAGGCTTAG
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