Gvermi4219.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi4219.t1
Unique Name	Gvermi4219.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	658

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_147	contig	ScGOVlb_147:777012..778985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707961.1
PFAMs	ABC_membrane_2,ABC_tran,PWWP
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	7.87e-162
EggNOG OGs	COG4178@1\|root,KOG0060@2759\|Eukaryota
Description	ATP-binding cassette sub-family D
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi4219	Gvermi4219	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_147 777012..778985 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4219.t1.stop1	Gvermi4219.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_147 777012..777014 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4219.t1.CDS1	Gvermi4219.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_147 777012..778985 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4219.t1.exon1	Gvermi4219.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_147 777012..778985 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4219.t1.start1	Gvermi4219.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_147 778983..778985 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4219.t1	Gvermi4219.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_147 777012..778985 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_147:777012..778985-
coding sequence from alignment at ScGOVlb_147:777012..778985-

mRNA sequence

>Gvermi4219.t1 ID=Gvermi4219.t1|Name=Gvermi4219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=658bp
MQLSPSASSNDLNQKQQQRLATQRQDPRRLWFLFLTLARPYWKYGAGAKF
NICWVVFLGLVRSSLSVVFSYISRDFWTALQKKDVPMFWRQITLFTIVLL
SALPILVWYTYAKDRLALRWRKWYTEKVLGDYFANRNYYEIDQSGTVDNP
DQRIADDIESFTSTSLSLFMTILLSIVDLVNFSIILLTIYPKLFIVLFSY
STMGTIIAVLLGKRLINLNFMQLQKEADFRYSLIRVRENAESIAFYRGEE
REKYEITRRFGAAFLNRIDLIVWSRNLSFFTTTYSYVIQILPLMIIAPLY
FKGTIELGVVSQSQQAFGHILDDLSLIVNEFDRLSAFSAGIDRLGELEEF
IYTRFGKNDDDTLPETRKSPGEESQPSAWYDDGDEDKIFAKLYGREDAIA
RFRRLQFEKLRREGAHEVDELLNLEGGSMRASITTTITPNGESKVVVENL
TLKTPDKLHRVLFENISFSLESGDRMLIVGPSGIGKSSALRALAGLWNCG
GGTVMRPKLEDIFFLPQRPYCTLGSLREQLVYPTPVSESNATPDDLHAAL
KVVNLESLPSRVGGLDEVRDWSGILSLGEQQRLAFARLIVGRPKIAILDE
CSSALDAASEDRLYSHLQTLRIGYISVGHRPSLFKYHNLLLRLGSNDQTL
SRIDETP*

spliced messenger RNA

>Gvermi4219.t1 ID=Gvermi4219.t1|Name=Gvermi4219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_147:777012..778985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGTCGCCATCCGCATCAAGCAATGACTTAAATCAAAAGCAGCA
GCAGCGTCTTGCAACGCAACGTCAAGACCCTCGGCGCTTATGGTTTTTGT
TCTTGACGCTGGCAAGGCCGTACTGGAAGTATGGCGCCGGTGCCAAGTTC
AACATTTGTTGGGTTGTGTTCCTTGGCCTCGTGCGAAGTAGCCTTTCAGT
CGTGTTCTCTTACATCTCCCGAGATTTTTGGACTGCCCTGCAAAAGAAGG
ACGTGCCCATGTTTTGGCGTCAAATAACGCTGTTTACCATTGTTCTCCTA
TCCGCGTTGCCCATCCTGGTGTGGTATACGTATGCCAAAGATCGATTAGC
CTTGCGGTGGCGAAAGTGGTACACGGAAAAGGTCTTGGGCGATTATTTTG
CAAATAGAAATTACTACGAGATTGACCAAAGTGGAACAGTCGATAATCCT
GACCAGCGAATTGCTGACGATATCGAGTCCTTCACATCCACTTCACTCTC
TCTTTTCATGACTATTTTGCTTTCAATTGTTGACCTTGTCAACTTTTCGA
TCATATTGCTCACCATTTACCCGAAACTCTTTATTGTTTTGTTTTCCTAC
TCAACGATGGGTACAATTATTGCAGTTCTACTAGGGAAGCGACTCATCAA
TCTCAACTTCATGCAGCTTCAGAAGGAAGCCGATTTCCGCTACTCTTTGA
TTCGAGTCCGAGAAAACGCTGAAAGCATCGCTTTCTATCGAGGGGAAGAA
CGGGAGAAGTATGAGATCACCAGAAGATTTGGAGCTGCCTTTCTGAACCG
CATCGACCTTATTGTGTGGTCGCGTAATCTTTCCTTTTTCACCACAACTT
ACTCCTATGTCATTCAGATTCTCCCCCTTATGATCATTGCACCACTGTAT
TTTAAGGGCACCATCGAGCTTGGTGTAGTCTCTCAATCCCAGCAAGCATT
TGGCCATATCCTTGATGATCTTTCTCTTATTGTGAATGAATTTGACAGAC
TGAGTGCGTTTTCTGCCGGTATTGATCGTCTTGGTGAGCTTGAAGAGTTC
ATTTACACTCGCTTCGGGAAAAATGATGATGATACTTTGCCTGAAACAAG
AAAAAGTCCTGGAGAAGAAAGTCAACCATCCGCCTGGTACGATGATGGCG
ACGAAGATAAAATTTTCGCAAAGTTGTACGGCCGAGAGGATGCCATAGCG
AGATTCCGAAGACTGCAATTCGAAAAGTTGCGAAGAGAAGGGGCGCATGA
AGTGGACGAGCTTCTAAACTTGGAGGGGGGGTCTATGAGAGCCAGTATCA
CTACTACAATCACCCCGAACGGTGAGTCAAAAGTGGTTGTCGAAAATTTA
ACGTTGAAGACTCCGGACAAGCTGCACCGCGTTCTCTTTGAGAACATATC
TTTTTCGTTAGAAAGCGGAGATAGAATGCTCATCGTTGGTCCGTCTGGCA
TTGGAAAAAGTAGCGCTTTGCGTGCCCTCGCCGGACTGTGGAACTGTGGT
GGAGGCACAGTGATGCGACCCAAACTCGAGGATATATTTTTCTTGCCACA
AAGGCCGTATTGTACTCTTGGGTCTCTTAGAGAACAACTTGTGTACCCAA
CTCCTGTTTCAGAATCAAACGCAACCCCGGACGACCTCCATGCGGCTCTG
AAGGTTGTCAACTTGGAATCATTGCCTTCCCGAGTTGGGGGTCTTGATGA
GGTCAGAGACTGGTCTGGAATTTTGTCTTTGGGGGAGCAGCAGCGGCTTG
CTTTTGCTCGTCTAATCGTCGGCAGGCCTAAAATAGCTATTTTAGACGAA
TGCTCCAGTGCCTTAGATGCGGCTTCGGAGGACCGGCTATATTCTCATCT
TCAGACTTTAAGGATCGGCTACATCTCAGTTGGACATAGGCCCAGTTTAT
TCAAATATCACAACCTCTTACTTCGCCTCGGGTCTAATGACCAAACTTTA
AGTCGAATTGACGAAACTCCATAA

protein sequence of Gvermi4219.t1

>Gvermi4219.t1 ID=Gvermi4219.t1|Name=Gvermi4219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=658bp
MQLSPSASSNDLNQKQQQRLATQRQDPRRLWFLFLTLARPYWKYGAGAKF
NICWVVFLGLVRSSLSVVFSYISRDFWTALQKKDVPMFWRQITLFTIVLL
SALPILVWYTYAKDRLALRWRKWYTEKVLGDYFANRNYYEIDQSGTVDNP
DQRIADDIESFTSTSLSLFMTILLSIVDLVNFSIILLTIYPKLFIVLFSY
STMGTIIAVLLGKRLINLNFMQLQKEADFRYSLIRVRENAESIAFYRGEE
REKYEITRRFGAAFLNRIDLIVWSRNLSFFTTTYSYVIQILPLMIIAPLY
FKGTIELGVVSQSQQAFGHILDDLSLIVNEFDRLSAFSAGIDRLGELEEF
IYTRFGKNDDDTLPETRKSPGEESQPSAWYDDGDEDKIFAKLYGREDAIA
RFRRLQFEKLRREGAHEVDELLNLEGGSMRASITTTITPNGESKVVVENL
TLKTPDKLHRVLFENISFSLESGDRMLIVGPSGIGKSSALRALAGLWNCG
GGTVMRPKLEDIFFLPQRPYCTLGSLREQLVYPTPVSESNATPDDLHAAL
KVVNLESLPSRVGGLDEVRDWSGILSLGEQQRLAFARLIVGRPKIAILDE
CSSALDAASEDRLYSHLQTLRIGYISVGHRPSLFKYHNLLLRLGSNDQTL
SRIDETP*

mRNA from alignment at ScGOVlb_147:777012..778985-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi4219.t1 ID=Gvermi4219.t1|Name=Gvermi4219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_147:777012..778985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTGTCGCCATCCGCATCAAGCAATGACTTAAATCAAAAGCAGCA
GCAGCGTCTTGCAACGCAACGTCAAGACCCTCGGCGCTTATGGTTTTTGT
TCTTGACGCTGGCAAGGCCGTACTGGAAGTATGGCGCCGGTGCCAAGTTC
AACATTTGTTGGGTTGTGTTCCTTGGCCTCGTGCGAAGTAGCCTTTCAGT
CGTGTTCTCTTACATCTCCCGAGATTTTTGGACTGCCCTGCAAAAGAAGG
ACGTGCCCATGTTTTGGCGTCAAATAACGCTGTTTACCATTGTTCTCCTA
TCCGCGTTGCCCATCCTGGTGTGGTATACGTATGCCAAAGATCGATTAGC
CTTGCGGTGGCGAAAGTGGTACACGGAAAAGGTCTTGGGCGATTATTTTG
CAAATAGAAATTACTACGAGATTGACCAAAGTGGAACAGTCGATAATCCT
GACCAGCGAATTGCTGACGATATCGAGTCCTTCACATCCACTTCACTCTC
TCTTTTCATGACTATTTTGCTTTCAATTGTTGACCTTGTCAACTTTTCGA
TCATATTGCTCACCATTTACCCGAAACTCTTTATTGTTTTGTTTTCCTAC
TCAACGATGGGTACAATTATTGCAGTTCTACTAGGGAAGCGACTCATCAA
TCTCAACTTCATGCAGCTTCAGAAGGAAGCCGATTTCCGCTACTCTTTGA
TTCGAGTCCGAGAAAACGCTGAAAGCATCGCTTTCTATCGAGGGGAAGAA
CGGGAGAAGTATGAGATCACCAGAAGATTTGGAGCTGCCTTTCTGAACCG
CATCGACCTTATTGTGTGGTCGCGTAATCTTTCCTTTTTCACCACAACTT
ACTCCTATGTCATTCAGATTCTCCCCCTTATGATCATTGCACCACTGTAT
TTTAAGGGCACCATCGAGCTTGGTGTAGTCTCTCAATCCCAGCAAGCATT
TGGCCATATCCTTGATGATCTTTCTCTTATTGTGAATGAATTTGACAGAC
TGAGTGCGTTTTCTGCCGGTATTGATCGTCTTGGTGAGCTTGAAGAGTTC
ATTTACACTCGCTTCGGGAAAAATGATGATGATACTTTGCCTGAAACAAG
AAAAAGTCCTGGAGAAGAAAGTCAACCATCCGCCTGGTACGATGATGGCG
ACGAAGATAAAATTTTCGCAAAGTTGTACGGCCGAGAGGATGCCATAGCG
AGATTCCGAAGACTGCAATTCGAAAAGTTGCGAAGAGAAGGGGCGCATGA
AGTGGACGAGCTTCTAAACTTGGAGGGGGGGTCTATGAGAGCCAGTATCA
CTACTACAATCACCCCGAACGGTGAGTCAAAAGTGGTTGTCGAAAATTTA
ACGTTGAAGACTCCGGACAAGCTGCACCGCGTTCTCTTTGAGAACATATC
TTTTTCGTTAGAAAGCGGAGATAGAATGCTCATCGTTGGTCCGTCTGGCA
TTGGAAAAAGTAGCGCTTTGCGTGCCCTCGCCGGACTGTGGAACTGTGGT
GGAGGCACAGTGATGCGACCCAAACTCGAGGATATATTTTTCTTGCCACA
AAGGCCGTATTGTACTCTTGGGTCTCTTAGAGAACAACTTGTGTACCCAA
CTCCTGTTTCAGAATCAAACGCAACCCCGGACGACCTCCATGCGGCTCTG
AAGGTTGTCAACTTGGAATCATTGCCTTCCCGAGTTGGGGGTCTTGATGA
GGTCAGAGACTGGTCTGGAATTTTGTCTTTGGGGGAGCAGCAGCGGCTTG
CTTTTGCTCGTCTAATCGTCGGCAGGCCTAAAATAGCTATTTTAGACGAA
TGCTCCAGTGCCTTAGATGCGGCTTCGGAGGACCGGCTATATTCTCATCT
TCAGACTTTAAGGATCGGCTACATCTCAGTTGGACATAGGCCCAGTTTAT
TCAAATATCACAACCTCTTACTTCGCCTCGGGTCTAATGACCAAACTTTA
AGTCGAATTGACGAAACTCCATAA

Coding sequence (CDS) from alignment at ScGOVlb_147:777012..778985-

>Gvermi4219.t1 ID=Gvermi4219.t1|Name=Gvermi4219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1974bp|location=Sequence derived from alignment at ScGOVlb_147:777012..778985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTGTCGCCATCCGCATCAAGCAATGACTTAAATCAAAAGCAGCA
GCAGCGTCTTGCAACGCAACGTCAAGACCCTCGGCGCTTATGGTTTTTGT
TCTTGACGCTGGCAAGGCCGTACTGGAAGTATGGCGCCGGTGCCAAGTTC
AACATTTGTTGGGTTGTGTTCCTTGGCCTCGTGCGAAGTAGCCTTTCAGT
CGTGTTCTCTTACATCTCCCGAGATTTTTGGACTGCCCTGCAAAAGAAGG
ACGTGCCCATGTTTTGGCGTCAAATAACGCTGTTTACCATTGTTCTCCTA
TCCGCGTTGCCCATCCTGGTGTGGTATACGTATGCCAAAGATCGATTAGC
CTTGCGGTGGCGAAAGTGGTACACGGAAAAGGTCTTGGGCGATTATTTTG
CAAATAGAAATTACTACGAGATTGACCAAAGTGGAACAGTCGATAATCCT
GACCAGCGAATTGCTGACGATATCGAGTCCTTCACATCCACTTCACTCTC
TCTTTTCATGACTATTTTGCTTTCAATTGTTGACCTTGTCAACTTTTCGA
TCATATTGCTCACCATTTACCCGAAACTCTTTATTGTTTTGTTTTCCTAC
TCAACGATGGGTACAATTATTGCAGTTCTACTAGGGAAGCGACTCATCAA
TCTCAACTTCATGCAGCTTCAGAAGGAAGCCGATTTCCGCTACTCTTTGA
TTCGAGTCCGAGAAAACGCTGAAAGCATCGCTTTCTATCGAGGGGAAGAA
CGGGAGAAGTATGAGATCACCAGAAGATTTGGAGCTGCCTTTCTGAACCG
CATCGACCTTATTGTGTGGTCGCGTAATCTTTCCTTTTTCACCACAACTT
ACTCCTATGTCATTCAGATTCTCCCCCTTATGATCATTGCACCACTGTAT
TTTAAGGGCACCATCGAGCTTGGTGTAGTCTCTCAATCCCAGCAAGCATT
TGGCCATATCCTTGATGATCTTTCTCTTATTGTGAATGAATTTGACAGAC
TGAGTGCGTTTTCTGCCGGTATTGATCGTCTTGGTGAGCTTGAAGAGTTC
ATTTACACTCGCTTCGGGAAAAATGATGATGATACTTTGCCTGAAACAAG
AAAAAGTCCTGGAGAAGAAAGTCAACCATCCGCCTGGTACGATGATGGCG
ACGAAGATAAAATTTTCGCAAAGTTGTACGGCCGAGAGGATGCCATAGCG
AGATTCCGAAGACTGCAATTCGAAAAGTTGCGAAGAGAAGGGGCGCATGA
AGTGGACGAGCTTCTAAACTTGGAGGGGGGGTCTATGAGAGCCAGTATCA
CTACTACAATCACCCCGAACGGTGAGTCAAAAGTGGTTGTCGAAAATTTA
ACGTTGAAGACTCCGGACAAGCTGCACCGCGTTCTCTTTGAGAACATATC
TTTTTCGTTAGAAAGCGGAGATAGAATGCTCATCGTTGGTCCGTCTGGCA
TTGGAAAAAGTAGCGCTTTGCGTGCCCTCGCCGGACTGTGGAACTGTGGT
GGAGGCACAGTGATGCGACCCAAACTCGAGGATATATTTTTCTTGCCACA
AAGGCCGTATTGTACTCTTGGGTCTCTTAGAGAACAACTTGTGTACCCAA
CTCCTGTTTCAGAATCAAACGCAACCCCGGACGACCTCCATGCGGCTCTG
AAGGTTGTCAACTTGGAATCATTGCCTTCCCGAGTTGGGGGTCTTGATGA
GGTCAGAGACTGGTCTGGAATTTTGTCTTTGGGGGAGCAGCAGCGGCTTG
CTTTTGCTCGTCTAATCGTCGGCAGGCCTAAAATAGCTATTTTAGACGAA
TGCTCCAGTGCCTTAGATGCGGCTTCGGAGGACCGGCTATATTCTCATCT
TCAGACTTTAAGGATCGGCTACATCTCAGTTGGACATAGGCCCAGTTTAT
TCAAATATCACAACCTCTTACTTCGCCTCGGGTCTAATGACCAAACTTTA
AGTCGAATTGACGAAACTCCATAA