Gvermi3826.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3826.t1
Unique NameGvermi3826.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4577352..4578896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391612.CY0110_09812
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue2.88e-15
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3826Gvermi3826Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4577352..4578896 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3826.t1.start1Gvermi3826.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4577352..4577354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3826.t1.CDS1Gvermi3826.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4577352..4578896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3826.t1.exon1Gvermi3826.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4577352..4578896 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3826.t1.stop1Gvermi3826.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4578894..4578896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3826.t1Gvermi3826.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4577352..4578896 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3826.t1 ID=Gvermi3826.t1|Name=Gvermi3826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=515bp
MNEPSLRALHCEKLPTPRPDPPECKPTRTSSPDQRFYFILLPSQDRSKLL
VQSLPDACVRLPVLETSVPVSCQTSDPIEDTVSQLLGVPVALVRVLWRAN
EDADIVLWDKCYHTVAVLLVECYEPECTINCTTTKTKWLPRCQVSNANWV
ATEQNLNFHLNQVVFDAMKEINGEIHPRIPPWQHMGWRMKMMKWVKHVLN
PLVTDQEHYAKFEMMASNHHSVVWGYNCEDQAPGETYNSYAWFYVKAALP
EFSEAQRTAAIARVIGDIVPEVIAVHQSGTMWLMGDAGILDEESGEYDGD
KIVQTITTMQQMSRHRLHQLRAGGVEVRDSKWVIANIHRILFDDNLQNAV
HGVAKYENILRKLRSCESEIIRACNMILSYDVPNTLVHGDLGLHNIGTPD
ESRGRGYQFFDWDCACIGHPFVDIKEPTRFSRDKASTDRLYHEYWKTWSS
IVSKEDFLKLIVLVQFLEDAMILDMFLKESQLYDYNYDLTKRMRYSLDYL
MEDLNDVKQYKPVK*
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spliced messenger RNA

>Gvermi3826.t1 ID=Gvermi3826.t1|Name=Gvermi3826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_41:4577352..4578896+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGCCGTCCCTCCGAGCTCTGCATTGCGAAAAACTTCCCACGCC
GCGCCCAGATCCCCCGGAGTGCAAACCAACCCGAACGTCTTCCCCTGACC
AACGCTTCTACTTCATTCTGCTCCCTTCGCAAGACAGAAGCAAACTGCTC
GTGCAGTCTCTGCCCGACGCATGCGTGCGGCTCCCCGTGCTGGAAACGTC
CGTCCCAGTCAGTTGCCAGACATCTGACCCCATCGAAGACACCGTCTCCC
AGCTACTCGGCGTTCCAGTGGCGCTCGTGAGGGTTCTGTGGAGAGCAAAC
GAGGATGCCGATATCGTCCTGTGGGATAAGTGTTACCACACCGTCGCTGT
CCTCCTCGTTGAATGCTATGAACCGGAGTGCACCATCAACTGCACAACCA
CAAAGACAAAATGGTTGCCGAGATGTCAAGTGTCCAACGCAAACTGGGTT
GCAACCGAGCAAAACCTCAATTTCCACCTCAACCAAGTTGTCTTCGATGC
CATGAAGGAGATAAATGGCGAAATCCACCCGAGAATCCCACCCTGGCAGC
ACATGGGGTGGCGCATGAAGATGATGAAATGGGTCAAGCACGTGCTCAAC
CCTCTCGTCACAGATCAGGAGCACTACGCCAAGTTTGAGATGATGGCAAG
CAATCACCACTCCGTCGTGTGGGGTTACAACTGCGAAGATCAAGCGCCGG
GAGAGACATACAATTCATACGCCTGGTTCTACGTCAAGGCAGCACTTCCG
GAGTTTAGCGAAGCTCAGCGCACGGCAGCAATAGCCCGCGTCATCGGTGA
CATTGTCCCGGAAGTCATTGCAGTGCACCAAAGTGGCACCATGTGGCTCA
TGGGAGACGCCGGCATACTGGATGAAGAAAGCGGCGAGTACGATGGTGAC
AAGATTGTGCAAACCATCACCACCATGCAGCAGATGTCGAGGCATCGTCT
GCACCAACTGAGAGCGGGCGGTGTAGAGGTGAGAGACAGCAAGTGGGTTA
TTGCCAACATTCACAGAATTCTGTTCGACGACAATTTGCAGAATGCAGTG
CACGGCGTCGCCAAGTATGAAAACATCCTGCGAAAACTCCGCAGCTGCGA
AAGTGAAATCATTCGTGCGTGCAACATGATCCTCAGCTACGATGTGCCAA
ACACTCTGGTGCACGGCGATTTGGGCTTGCACAATATTGGAACGCCAGAC
GAATCCAGAGGTCGGGGCTACCAATTCTTTGATTGGGATTGTGCTTGCAT
CGGGCACCCTTTTGTTGATATCAAGGAACCTACTCGCTTTTCCCGCGACA
AGGCGAGCACAGATCGCTTGTATCACGAGTACTGGAAGACCTGGAGCTCA
ATCGTAAGCAAGGAAGATTTTCTGAAGCTCATTGTATTGGTGCAGTTTTT
GGAGGATGCCATGATCCTGGATATGTTTCTCAAAGAAAGTCAGCTATATG
ACTATAATTATGATTTAACAAAGCGAATGAGATACAGTCTCGACTATCTT
ATGGAGGATCTGAACGATGTCAAGCAGTATAAACCGGTCAAGTAG
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protein sequence of Gvermi3826.t1

>Gvermi3826.t1 ID=Gvermi3826.t1|Name=Gvermi3826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=515bp
MNEPSLRALHCEKLPTPRPDPPECKPTRTSSPDQRFYFILLPSQDRSKLL
VQSLPDACVRLPVLETSVPVSCQTSDPIEDTVSQLLGVPVALVRVLWRAN
EDADIVLWDKCYHTVAVLLVECYEPECTINCTTTKTKWLPRCQVSNANWV
ATEQNLNFHLNQVVFDAMKEINGEIHPRIPPWQHMGWRMKMMKWVKHVLN
PLVTDQEHYAKFEMMASNHHSVVWGYNCEDQAPGETYNSYAWFYVKAALP
EFSEAQRTAAIARVIGDIVPEVIAVHQSGTMWLMGDAGILDEESGEYDGD
KIVQTITTMQQMSRHRLHQLRAGGVEVRDSKWVIANIHRILFDDNLQNAV
HGVAKYENILRKLRSCESEIIRACNMILSYDVPNTLVHGDLGLHNIGTPD
ESRGRGYQFFDWDCACIGHPFVDIKEPTRFSRDKASTDRLYHEYWKTWSS
IVSKEDFLKLIVLVQFLEDAMILDMFLKESQLYDYNYDLTKRMRYSLDYL
MEDLNDVKQYKPVK*
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mRNA from alignment at ScGOVlb_41:4577352..4578896+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3826.t1 ID=Gvermi3826.t1|Name=Gvermi3826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_41:4577352..4578896+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGAGCCGTCCCTCCGAGCTCTGCATTGCGAAAAACTTCCCACGCC
GCGCCCAGATCCCCCGGAGTGCAAACCAACCCGAACGTCTTCCCCTGACC
AACGCTTCTACTTCATTCTGCTCCCTTCGCAAGACAGAAGCAAACTGCTC
GTGCAGTCTCTGCCCGACGCATGCGTGCGGCTCCCCGTGCTGGAAACGTC
CGTCCCAGTCAGTTGCCAGACATCTGACCCCATCGAAGACACCGTCTCCC
AGCTACTCGGCGTTCCAGTGGCGCTCGTGAGGGTTCTGTGGAGAGCAAAC
GAGGATGCCGATATCGTCCTGTGGGATAAGTGTTACCACACCGTCGCTGT
CCTCCTCGTTGAATGCTATGAACCGGAGTGCACCATCAACTGCACAACCA
CAAAGACAAAATGGTTGCCGAGATGTCAAGTGTCCAACGCAAACTGGGTT
GCAACCGAGCAAAACCTCAATTTCCACCTCAACCAAGTTGTCTTCGATGC
CATGAAGGAGATAAATGGCGAAATCCACCCGAGAATCCCACCCTGGCAGC
ACATGGGGTGGCGCATGAAGATGATGAAATGGGTCAAGCACGTGCTCAAC
CCTCTCGTCACAGATCAGGAGCACTACGCCAAGTTTGAGATGATGGCAAG
CAATCACCACTCCGTCGTGTGGGGTTACAACTGCGAAGATCAAGCGCCGG
GAGAGACATACAATTCATACGCCTGGTTCTACGTCAAGGCAGCACTTCCG
GAGTTTAGCGAAGCTCAGCGCACGGCAGCAATAGCCCGCGTCATCGGTGA
CATTGTCCCGGAAGTCATTGCAGTGCACCAAAGTGGCACCATGTGGCTCA
TGGGAGACGCCGGCATACTGGATGAAGAAAGCGGCGAGTACGATGGTGAC
AAGATTGTGCAAACCATCACCACCATGCAGCAGATGTCGAGGCATCGTCT
GCACCAACTGAGAGCGGGCGGTGTAGAGGTGAGAGACAGCAAGTGGGTTA
TTGCCAACATTCACAGAATTCTGTTCGACGACAATTTGCAGAATGCAGTG
CACGGCGTCGCCAAGTATGAAAACATCCTGCGAAAACTCCGCAGCTGCGA
AAGTGAAATCATTCGTGCGTGCAACATGATCCTCAGCTACGATGTGCCAA
ACACTCTGGTGCACGGCGATTTGGGCTTGCACAATATTGGAACGCCAGAC
GAATCCAGAGGTCGGGGCTACCAATTCTTTGATTGGGATTGTGCTTGCAT
CGGGCACCCTTTTGTTGATATCAAGGAACCTACTCGCTTTTCCCGCGACA
AGGCGAGCACAGATCGCTTGTATCACGAGTACTGGAAGACCTGGAGCTCA
ATCGTAAGCAAGGAAGATTTTCTGAAGCTCATTGTATTGGTGCAGTTTTT
GGAGGATGCCATGATCCTGGATATGTTTCTCAAAGAAAGTCAGCTATATG
ACTATAATTATGATTTAACAAAGCGAATGAGATACAGTCTCGACTATCTT
ATGGAGGATCTGAACGATGTCAAGCAGTATAAACCGGTCAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:4577352..4578896+

>Gvermi3826.t1 ID=Gvermi3826.t1|Name=Gvermi3826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1545bp|location=Sequence derived from alignment at ScGOVlb_41:4577352..4578896+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGAGCCGTCCCTCCGAGCTCTGCATTGCGAAAAACTTCCCACGCC
GCGCCCAGATCCCCCGGAGTGCAAACCAACCCGAACGTCTTCCCCTGACC
AACGCTTCTACTTCATTCTGCTCCCTTCGCAAGACAGAAGCAAACTGCTC
GTGCAGTCTCTGCCCGACGCATGCGTGCGGCTCCCCGTGCTGGAAACGTC
CGTCCCAGTCAGTTGCCAGACATCTGACCCCATCGAAGACACCGTCTCCC
AGCTACTCGGCGTTCCAGTGGCGCTCGTGAGGGTTCTGTGGAGAGCAAAC
GAGGATGCCGATATCGTCCTGTGGGATAAGTGTTACCACACCGTCGCTGT
CCTCCTCGTTGAATGCTATGAACCGGAGTGCACCATCAACTGCACAACCA
CAAAGACAAAATGGTTGCCGAGATGTCAAGTGTCCAACGCAAACTGGGTT
GCAACCGAGCAAAACCTCAATTTCCACCTCAACCAAGTTGTCTTCGATGC
CATGAAGGAGATAAATGGCGAAATCCACCCGAGAATCCCACCCTGGCAGC
ACATGGGGTGGCGCATGAAGATGATGAAATGGGTCAAGCACGTGCTCAAC
CCTCTCGTCACAGATCAGGAGCACTACGCCAAGTTTGAGATGATGGCAAG
CAATCACCACTCCGTCGTGTGGGGTTACAACTGCGAAGATCAAGCGCCGG
GAGAGACATACAATTCATACGCCTGGTTCTACGTCAAGGCAGCACTTCCG
GAGTTTAGCGAAGCTCAGCGCACGGCAGCAATAGCCCGCGTCATCGGTGA
CATTGTCCCGGAAGTCATTGCAGTGCACCAAAGTGGCACCATGTGGCTCA
TGGGAGACGCCGGCATACTGGATGAAGAAAGCGGCGAGTACGATGGTGAC
AAGATTGTGCAAACCATCACCACCATGCAGCAGATGTCGAGGCATCGTCT
GCACCAACTGAGAGCGGGCGGTGTAGAGGTGAGAGACAGCAAGTGGGTTA
TTGCCAACATTCACAGAATTCTGTTCGACGACAATTTGCAGAATGCAGTG
CACGGCGTCGCCAAGTATGAAAACATCCTGCGAAAACTCCGCAGCTGCGA
AAGTGAAATCATTCGTGCGTGCAACATGATCCTCAGCTACGATGTGCCAA
ACACTCTGGTGCACGGCGATTTGGGCTTGCACAATATTGGAACGCCAGAC
GAATCCAGAGGTCGGGGCTACCAATTCTTTGATTGGGATTGTGCTTGCAT
CGGGCACCCTTTTGTTGATATCAAGGAACCTACTCGCTTTTCCCGCGACA
AGGCGAGCACAGATCGCTTGTATCACGAGTACTGGAAGACCTGGAGCTCA
ATCGTAAGCAAGGAAGATTTTCTGAAGCTCATTGTATTGGTGCAGTTTTT
GGAGGATGCCATGATCCTGGATATGTTTCTCAAAGAAAGTCAGCTATATG
ACTATAATTATGATTTAACAAAGCGAATGAGATACAGTCTCGACTATCTT
ATGGAGGATCTGAACGATGTCAAGCAGTATAAACCGGTCAAGTAG
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