Gvermi3825.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3825.t1
Unique NameGvermi3825.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4575799..4576340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008607567.1
PFAMsGlyoxalase
Max annot lvl2759|Eukaryota
Evalue5.27e-32
EggNOG OGs2CF1K@1|root,2RZ76@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3825Gvermi3825Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4575799..4576340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1Gvermi3825.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4575799..4576340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1.stop1Gvermi3825.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4575799..4575801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1.CDS1Gvermi3825.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4575799..4576069 -
Gvermi3825.t1.CDS2Gvermi3825.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4576177..4576340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1.exon1Gvermi3825.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4575799..4576069 -
Gvermi3825.t1.exon2Gvermi3825.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4576177..4576340 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1.intron1Gvermi3825.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4576070..4576176 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3825.t1.start1Gvermi3825.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4576338..4576340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3825.t1 ID=Gvermi3825.t1|Name=Gvermi3825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=145bp
MTPRLSRIVLLLRDVQLGLQFYRDGLGLRVESHGARFARLLAANDTALEL
CAAESESQCSAGYSPFLTFEVRDMDETIPRLVQHGAVLDGAIRYEAYGKV
AAVRTPDGHMLGLFEKAGLPNDADTALAAAIAAKRHLHPHRSKS*
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spliced messenger RNA

>Gvermi3825.t1 ID=Gvermi3825.t1|Name=Gvermi3825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp|location=Sequence derived from alignment at ScGOVlb_41:4575799..4576340- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCGCGACTGTCCAGAATCGTGCTGCTGTTGCGCGACGTGCAGCT
CGGCCTCCAGTTCTACCGCGACGGCCTGGGGCTGCGCGTCGAGTCGCACG
GCGCCCGCTTTGCGCGCCTGCTCGCCGCCAATGACACAGCGCTGGAGCTG
TGCGCCGCGGAGAGCGAGTCCCAGTGCTCCGCCGGCTACTCGCCGTTCCT
CACGTTCGAGGTGCGCGACATGGACGAGACGATCCCCAGGCTCGTGCAGC
ACGGCGCCGTGCTGGACGGCGCCATTCGCTACGAGGCGTACGGCAAGGTT
GCGGCCGTGCGCACCCCTGACGGCCACATGCTGGGCTTGTTCGAGAAGGC
GGGCCTGCCAAACGACGCCGACACCGCCCTAGCTGCCGCCATCGCCGCGA
AAAGACATCTGCATCCGCACCGCTCCAAGTCGTGA
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protein sequence of Gvermi3825.t1

>Gvermi3825.t1 ID=Gvermi3825.t1|Name=Gvermi3825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=145bp
MTPRLSRIVLLLRDVQLGLQFYRDGLGLRVESHGARFARLLAANDTALEL
CAAESESQCSAGYSPFLTFEVRDMDETIPRLVQHGAVLDGAIRYEAYGKV
AAVRTPDGHMLGLFEKAGLPNDADTALAAAIAAKRHLHPHRSKS*
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mRNA from alignment at ScGOVlb_41:4575799..4576340-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3825.t1 ID=Gvermi3825.t1|Name=Gvermi3825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=542bp|location=Sequence derived from alignment at ScGOVlb_41:4575799..4576340- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCGCGACTGTCCAGAATCGTGCTGCTGTTGCGCGACGTGCAGCT
CGGCCTCCAGTTCTACCGCGACGGCCTGGGGCTGCGCGTCGAGTCGCACG
GCGCCCGCTTTGCGCGCCTGCTCGCCGCCAATGACACAGCGCTGGAGCTG
TGCGCCGCGGAGAGGTACGTGACGCGCGCGCGCGCGCGCGCGAATCTCTT
TGGCCGCCCGCGAGCCCCGAGTTGACACCCCGCCCCCCGCCCGCGCATTC
GCCGCGTCCGCGCGCGCGCAGCGAGTCCCAGTGCTCCGCCGGCTACTCGC
CGTTCCTCACGTTCGAGGTGCGCGACATGGACGAGACGATCCCCAGGCTC
GTGCAGCACGGCGCCGTGCTGGACGGCGCCATTCGCTACGAGGCGTACGG
CAAGGTTGCGGCCGTGCGCACCCCTGACGGCCACATGCTGGGCTTGTTCG
AGAAGGCGGGCCTGCCAAACGACGCCGACACCGCCCTAGCTGCCGCCATC
GCCGCGAAAAGACATCTGCATCCGCACCGCTCCAAGTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4575799..4576340-

>Gvermi3825.t1 ID=Gvermi3825.t1|Name=Gvermi3825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=435bp|location=Sequence derived from alignment at ScGOVlb_41:4575799..4576340- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCGCGACTGTCCAGAATCGTGCTGCTGTTGCGCGACGTGCAGCT
CGGCCTCCAGTTCTACCGCGACGGCCTGGGGCTGCGCGTCGAGTCGCACG
GCGCCCGCTTTGCGCGCCTGCTCGCCGCCAATGACACAGCGCTGGAGCTG
TGCGCCGCGGAGAGCGAGTCCCAGTGCTCCGCCGGCTACTCGCCGTTCCT
CACGTTCGAGGTGCGCGACATGGACGAGACGATCCCCAGGCTCGTGCAGC
ACGGCGCCGTGCTGGACGGCGCCATTCGCTACGAGGCGTACGGCAAGGTT
GCGGCCGTGCGCACCCCTGACGGCCACATGCTGGGCTTGTTCGAGAAGGC
GGGCCTGCCAAACGACGCCGACACCGCCCTAGCTGCCGCCATCGCCGCGA
AAAGACATCTGCATCCGCACCGCTCCAAGTCGTGA
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