Gvermi3820.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3820.t1
Unique NameGvermi3820.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4526675..4527910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705709.1
Preferred nameGPAT
PFAMsAcyltransferase,GPAT_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K00630
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
GOsGO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576
Evalue5.92e-80
EggNOG OGs28J58@1|root,2QRHE@2759|Eukaryota
EC2.3.1.15
Descriptionsn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s2_g9657_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3820Gvermi3820Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4526675..4527910 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3820.t1.stop1Gvermi3820.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4526675..4526677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3820.t1.CDS1Gvermi3820.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4526675..4527910 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3820.t1.exon1Gvermi3820.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4526675..4527910 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3820.t1.start1Gvermi3820.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4527908..4527910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3820.t1Gvermi3820.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4526675..4527910 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3820.t1 ID=Gvermi3820.t1|Name=Gvermi3820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=412bp
MKNCAFVSPLPLRRLLQSLPASSTAHSQTAVRQRIYRLRATALISLDKEN
HRSTFEAPSPSRLEAVDGLRFFERADYLVNSRQVPRHIVENLKAWHKSYG
VAASENPSLEEDPDDFTEAMFSTLLELCRRTIADPLDFSSYHRRIRHPFD
HYKFGFDFSSVLLDRSKSSVIGIENIRQAENYVSQGHNVIFLSNHQSEGD
PYAIDFLLDWIAGCDRRFCEKLVFMAGDRVRNDPMVAPFSAGRNLLTVYS
KKHINDQPELRDQKLQHNRRTIWETQRILKKGGKAVWFAPSGGRDRRSAE
TGSVEISPFDEGAVATMIFTAEKSGAPCHFYPMALWTYDMLPPPSGVGGA
EVGEERTVKYTPMRMYVGNEIDWSPVVSTSIADKLEKRKTQCTYIENLVR
DGYTRIGGYEH*
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spliced messenger RNA

>Gvermi3820.t1 ID=Gvermi3820.t1|Name=Gvermi3820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at ScGOVlb_41:4526675..4527910- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAATTGCGCTTTTGTGTCTCCTCTGCCATTACGACGCTTGCTGCA
GTCGTTGCCCGCCTCGAGCACGGCCCATTCCCAAACAGCGGTCCGCCAAC
GAATCTACCGCTTGCGCGCTACTGCTCTAATTTCTCTCGACAAGGAGAAT
CACCGTTCCACCTTCGAAGCTCCCAGCCCCAGTCGCTTGGAAGCCGTCGA
TGGATTGCGATTCTTCGAGCGCGCCGACTATCTTGTCAACTCACGGCAAG
TACCCCGTCACATAGTCGAAAACCTCAAAGCTTGGCACAAATCCTACGGA
GTGGCAGCCTCGGAAAACCCATCATTGGAGGAGGATCCGGACGATTTCAC
GGAGGCTATGTTCTCAACCCTCCTAGAGCTCTGTCGGAGAACTATTGCAG
ACCCTCTCGATTTCTCATCTTACCATCGACGGATCCGACACCCGTTCGAT
CACTACAAATTTGGCTTCGACTTTTCCAGTGTTCTTCTTGATAGATCCAA
GAGTTCTGTCATCGGAATTGAAAATATTCGTCAAGCGGAGAATTACGTAT
CACAGGGACACAATGTTATATTCTTGTCCAACCACCAGTCTGAGGGAGAC
CCGTATGCTATCGATTTCTTATTGGACTGGATTGCAGGATGCGACCGACG
TTTTTGTGAGAAGCTGGTGTTCATGGCTGGTGATCGTGTGAGGAACGATC
CCATGGTTGCCCCATTTTCAGCCGGCCGAAATCTGCTCACCGTGTACTCA
AAGAAACATATCAATGACCAACCGGAGCTGCGGGACCAGAAACTGCAGCA
CAATAGGCGAACTATTTGGGAGACACAGCGCATATTGAAGAAGGGCGGAA
AAGCGGTGTGGTTCGCTCCGTCAGGAGGGCGAGATAGAAGGAGTGCGGAA
ACGGGGAGTGTTGAGATATCACCTTTCGATGAAGGGGCCGTAGCCACGAT
GATATTCACAGCGGAGAAAAGCGGAGCTCCATGTCATTTTTATCCAATGG
CACTCTGGACGTACGATATGCTTCCACCGCCTTCCGGTGTTGGAGGTGCG
GAAGTCGGAGAAGAAAGAACCGTCAAATATACACCAATGCGAATGTACGT
GGGCAATGAAATCGACTGGAGTCCGGTTGTGTCGACAAGTATTGCGGACA
AACTCGAAAAGAGAAAAACTCAATGCACATACATTGAGAATCTCGTCAGG
GATGGATATACACGAATCGGCGGGTATGAGCATTGA
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protein sequence of Gvermi3820.t1

>Gvermi3820.t1 ID=Gvermi3820.t1|Name=Gvermi3820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=412bp
MKNCAFVSPLPLRRLLQSLPASSTAHSQTAVRQRIYRLRATALISLDKEN
HRSTFEAPSPSRLEAVDGLRFFERADYLVNSRQVPRHIVENLKAWHKSYG
VAASENPSLEEDPDDFTEAMFSTLLELCRRTIADPLDFSSYHRRIRHPFD
HYKFGFDFSSVLLDRSKSSVIGIENIRQAENYVSQGHNVIFLSNHQSEGD
PYAIDFLLDWIAGCDRRFCEKLVFMAGDRVRNDPMVAPFSAGRNLLTVYS
KKHINDQPELRDQKLQHNRRTIWETQRILKKGGKAVWFAPSGGRDRRSAE
TGSVEISPFDEGAVATMIFTAEKSGAPCHFYPMALWTYDMLPPPSGVGGA
EVGEERTVKYTPMRMYVGNEIDWSPVVSTSIADKLEKRKTQCTYIENLVR
DGYTRIGGYEH*
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mRNA from alignment at ScGOVlb_41:4526675..4527910-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3820.t1 ID=Gvermi3820.t1|Name=Gvermi3820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at ScGOVlb_41:4526675..4527910- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAATTGCGCTTTTGTGTCTCCTCTGCCATTACGACGCTTGCTGCA
GTCGTTGCCCGCCTCGAGCACGGCCCATTCCCAAACAGCGGTCCGCCAAC
GAATCTACCGCTTGCGCGCTACTGCTCTAATTTCTCTCGACAAGGAGAAT
CACCGTTCCACCTTCGAAGCTCCCAGCCCCAGTCGCTTGGAAGCCGTCGA
TGGATTGCGATTCTTCGAGCGCGCCGACTATCTTGTCAACTCACGGCAAG
TACCCCGTCACATAGTCGAAAACCTCAAAGCTTGGCACAAATCCTACGGA
GTGGCAGCCTCGGAAAACCCATCATTGGAGGAGGATCCGGACGATTTCAC
GGAGGCTATGTTCTCAACCCTCCTAGAGCTCTGTCGGAGAACTATTGCAG
ACCCTCTCGATTTCTCATCTTACCATCGACGGATCCGACACCCGTTCGAT
CACTACAAATTTGGCTTCGACTTTTCCAGTGTTCTTCTTGATAGATCCAA
GAGTTCTGTCATCGGAATTGAAAATATTCGTCAAGCGGAGAATTACGTAT
CACAGGGACACAATGTTATATTCTTGTCCAACCACCAGTCTGAGGGAGAC
CCGTATGCTATCGATTTCTTATTGGACTGGATTGCAGGATGCGACCGACG
TTTTTGTGAGAAGCTGGTGTTCATGGCTGGTGATCGTGTGAGGAACGATC
CCATGGTTGCCCCATTTTCAGCCGGCCGAAATCTGCTCACCGTGTACTCA
AAGAAACATATCAATGACCAACCGGAGCTGCGGGACCAGAAACTGCAGCA
CAATAGGCGAACTATTTGGGAGACACAGCGCATATTGAAGAAGGGCGGAA
AAGCGGTGTGGTTCGCTCCGTCAGGAGGGCGAGATAGAAGGAGTGCGGAA
ACGGGGAGTGTTGAGATATCACCTTTCGATGAAGGGGCCGTAGCCACGAT
GATATTCACAGCGGAGAAAAGCGGAGCTCCATGTCATTTTTATCCAATGG
CACTCTGGACGTACGATATGCTTCCACCGCCTTCCGGTGTTGGAGGTGCG
GAAGTCGGAGAAGAAAGAACCGTCAAATATACACCAATGCGAATGTACGT
GGGCAATGAAATCGACTGGAGTCCGGTTGTGTCGACAAGTATTGCGGACA
AACTCGAAAAGAGAAAAACTCAATGCACATACATTGAGAATCTCGTCAGG
GATGGATATACACGAATCGGCGGGTATGAGCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4526675..4527910-

>Gvermi3820.t1 ID=Gvermi3820.t1|Name=Gvermi3820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1236bp|location=Sequence derived from alignment at ScGOVlb_41:4526675..4527910- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAATTGCGCTTTTGTGTCTCCTCTGCCATTACGACGCTTGCTGCA
GTCGTTGCCCGCCTCGAGCACGGCCCATTCCCAAACAGCGGTCCGCCAAC
GAATCTACCGCTTGCGCGCTACTGCTCTAATTTCTCTCGACAAGGAGAAT
CACCGTTCCACCTTCGAAGCTCCCAGCCCCAGTCGCTTGGAAGCCGTCGA
TGGATTGCGATTCTTCGAGCGCGCCGACTATCTTGTCAACTCACGGCAAG
TACCCCGTCACATAGTCGAAAACCTCAAAGCTTGGCACAAATCCTACGGA
GTGGCAGCCTCGGAAAACCCATCATTGGAGGAGGATCCGGACGATTTCAC
GGAGGCTATGTTCTCAACCCTCCTAGAGCTCTGTCGGAGAACTATTGCAG
ACCCTCTCGATTTCTCATCTTACCATCGACGGATCCGACACCCGTTCGAT
CACTACAAATTTGGCTTCGACTTTTCCAGTGTTCTTCTTGATAGATCCAA
GAGTTCTGTCATCGGAATTGAAAATATTCGTCAAGCGGAGAATTACGTAT
CACAGGGACACAATGTTATATTCTTGTCCAACCACCAGTCTGAGGGAGAC
CCGTATGCTATCGATTTCTTATTGGACTGGATTGCAGGATGCGACCGACG
TTTTTGTGAGAAGCTGGTGTTCATGGCTGGTGATCGTGTGAGGAACGATC
CCATGGTTGCCCCATTTTCAGCCGGCCGAAATCTGCTCACCGTGTACTCA
AAGAAACATATCAATGACCAACCGGAGCTGCGGGACCAGAAACTGCAGCA
CAATAGGCGAACTATTTGGGAGACACAGCGCATATTGAAGAAGGGCGGAA
AAGCGGTGTGGTTCGCTCCGTCAGGAGGGCGAGATAGAAGGAGTGCGGAA
ACGGGGAGTGTTGAGATATCACCTTTCGATGAAGGGGCCGTAGCCACGAT
GATATTCACAGCGGAGAAAAGCGGAGCTCCATGTCATTTTTATCCAATGG
CACTCTGGACGTACGATATGCTTCCACCGCCTTCCGGTGTTGGAGGTGCG
GAAGTCGGAGAAGAAAGAACCGTCAAATATACACCAATGCGAATGTACGT
GGGCAATGAAATCGACTGGAGTCCGGTTGTGTCGACAAGTATTGCGGACA
AACTCGAAAAGAGAAAAACTCAATGCACATACATTGAGAATCTCGTCAGG
GATGGATATACACGAATCGGCGGGTATGAGCATTGA
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