Gvermi3819.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3819.t1
Unique Name	Gvermi3819.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4525032..4526060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703841.1
Preferred name	cit-1.2
PFAMs	BTB,Cyclin_C,Cyclin_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15188
KEGG Pathway	ko05202,map05202
GOs	GO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue	6.37e-55
EggNOG OGs	COG5333@1\|root,KOG0834@2759\|Eukaryota
Description	positive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG category	DKL
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3819	Gvermi3819	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4525032..4526060 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3819.t1.start1	Gvermi3819.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4525032..4525034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3819.t1.CDS1	Gvermi3819.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4525032..4526060 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3819.t1.exon1	Gvermi3819.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4525032..4526060 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3819.t1.stop1	Gvermi3819.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4526058..4526060 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3819.t1	Gvermi3819.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4525032..4526060 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4525032..4526060+
coding sequence from alignment at ScGOVlb_41:4525032..4526060+

mRNA sequence

>Gvermi3819.t1 ID=Gvermi3819.t1|Name=Gvermi3819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=343bp
MSRPHNLSQDGSRRGIKRPNQHIGGACPPVQTSEDNSWLFTEEEVTETPS
RVQGLPEPVELKVIAKTAQFIQETGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LLENSPGYYEEKNNILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGSD
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSAKLHNHPLPDG
TTRERATGKRILAWHEFFKTNLNRVEEICKILLDMYELEDKASNMFRNGT
GVLDSIPASHPAKRHKTEGVKLESTPIVNDSRPRVEPYTAYR*

spliced messenger RNA

>Gvermi3819.t1 ID=Gvermi3819.t1|Name=Gvermi3819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at ScGOVlb_41:4525032..4526060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGCCACATAACCTCTCCCAGGATGGCTCTCGACGCGGAATCAA
GCGCCCAAATCAACATATTGGTGGAGCCTGCCCCCCCGTGCAGACCTCAG
AAGATAACTCGTGGCTGTTCACAGAAGAAGAGGTGACAGAAACTCCCTCA
CGGGTACAGGGGCTTCCGGAACCTGTTGAGCTCAAGGTCATCGCCAAAAC
TGCACAATTCATTCAAGAAACCGGACGTGAGCTTCAAGTCCCGCAGCTCA
CTATGTCTGTCGCCGTCAAATTCTTTCAACGCTTCTTTATGTTGGAAAGC
ATGCTCAATCACCCGCCGCCGCTCGTGGCCGCCGCATGCCTGTTTCTTTC
CTGCAAGGTGCAGGAAACACACAAACGCCTCAAGGATATCATTTATTGGA
CAGTAAAAGTGCGAACAAGAAACACAAAAGATTTCCCCGAGGGCATGGAT
TTGCTCGAGAATTCTCCAGGATATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGCGAGGTTTTACGCGTTCTAAACTTTGATCTCACCGTTGATC
ATCCGTACAAGCACTTGTGGACCTTGACAAAGTCCTACCTCGGCAGTGAT
CAAGTACAGAAATCCATCACCCAAGCTGGCTGGAATTTCTTGAATGACTC
ATTCAGAACCTATTTGCACGTAAGATACGACGCAAAAGAGGTTGCTACGG
CAGCGTTTTTCATGTCAGCCAAGCTTCATAATCATCCGCTGCCGGATGGG
ACTACCAGGGAACGAGCAACAGGCAAGCGAATCCTCGCTTGGCATGAGTT
CTTTAAAACAAATCTCAATCGCGTGGAGGAAATTTGCAAGATTCTTCTTG
ACATGTACGAATTGGAAGATAAGGCTTCCAATATGTTTAGAAACGGAACT
GGCGTTTTGGACTCTATACCCGCCAGTCATCCTGCAAAGCGTCACAAGAC
TGAGGGGGTTAAGCTAGAGTCAACTCCAATCGTGAACGACTCCCGACCAC
GAGTTGAGCCATACACCGCTTACCGTTAA

protein sequence of Gvermi3819.t1

>Gvermi3819.t1 ID=Gvermi3819.t1|Name=Gvermi3819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=343bp
MSRPHNLSQDGSRRGIKRPNQHIGGACPPVQTSEDNSWLFTEEEVTETPS
RVQGLPEPVELKVIAKTAQFIQETGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LLENSPGYYEEKNNILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGSD
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSAKLHNHPLPDG
TTRERATGKRILAWHEFFKTNLNRVEEICKILLDMYELEDKASNMFRNGT
GVLDSIPASHPAKRHKTEGVKLESTPIVNDSRPRVEPYTAYR*

mRNA from alignment at ScGOVlb_41:4525032..4526060+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3819.t1 ID=Gvermi3819.t1|Name=Gvermi3819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at ScGOVlb_41:4525032..4526060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCCACATAACCTCTCCCAGGATGGCTCTCGACGCGGAATCAA
GCGCCCAAATCAACATATTGGTGGAGCCTGCCCCCCCGTGCAGACCTCAG
AAGATAACTCGTGGCTGTTCACAGAAGAAGAGGTGACAGAAACTCCCTCA
CGGGTACAGGGGCTTCCGGAACCTGTTGAGCTCAAGGTCATCGCCAAAAC
TGCACAATTCATTCAAGAAACCGGACGTGAGCTTCAAGTCCCGCAGCTCA
CTATGTCTGTCGCCGTCAAATTCTTTCAACGCTTCTTTATGTTGGAAAGC
ATGCTCAATCACCCGCCGCCGCTCGTGGCCGCCGCATGCCTGTTTCTTTC
CTGCAAGGTGCAGGAAACACACAAACGCCTCAAGGATATCATTTATTGGA
CAGTAAAAGTGCGAACAAGAAACACAAAAGATTTCCCCGAGGGCATGGAT
TTGCTCGAGAATTCTCCAGGATATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGCGAGGTTTTACGCGTTCTAAACTTTGATCTCACCGTTGATC
ATCCGTACAAGCACTTGTGGACCTTGACAAAGTCCTACCTCGGCAGTGAT
CAAGTACAGAAATCCATCACCCAAGCTGGCTGGAATTTCTTGAATGACTC
ATTCAGAACCTATTTGCACGTAAGATACGACGCAAAAGAGGTTGCTACGG
CAGCGTTTTTCATGTCAGCCAAGCTTCATAATCATCCGCTGCCGGATGGG
ACTACCAGGGAACGAGCAACAGGCAAGCGAATCCTCGCTTGGCATGAGTT
CTTTAAAACAAATCTCAATCGCGTGGAGGAAATTTGCAAGATTCTTCTTG
ACATGTACGAATTGGAAGATAAGGCTTCCAATATGTTTAGAAACGGAACT
GGCGTTTTGGACTCTATACCCGCCAGTCATCCTGCAAAGCGTCACAAGAC
TGAGGGGGTTAAGCTAGAGTCAACTCCAATCGTGAACGACTCCCGACCAC
GAGTTGAGCCATACACCGCTTACCGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:4525032..4526060+

>Gvermi3819.t1 ID=Gvermi3819.t1|Name=Gvermi3819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1029bp|location=Sequence derived from alignment at ScGOVlb_41:4525032..4526060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCCACATAACCTCTCCCAGGATGGCTCTCGACGCGGAATCAA
GCGCCCAAATCAACATATTGGTGGAGCCTGCCCCCCCGTGCAGACCTCAG
AAGATAACTCGTGGCTGTTCACAGAAGAAGAGGTGACAGAAACTCCCTCA
CGGGTACAGGGGCTTCCGGAACCTGTTGAGCTCAAGGTCATCGCCAAAAC
TGCACAATTCATTCAAGAAACCGGACGTGAGCTTCAAGTCCCGCAGCTCA
CTATGTCTGTCGCCGTCAAATTCTTTCAACGCTTCTTTATGTTGGAAAGC
ATGCTCAATCACCCGCCGCCGCTCGTGGCCGCCGCATGCCTGTTTCTTTC
CTGCAAGGTGCAGGAAACACACAAACGCCTCAAGGATATCATTTATTGGA
CAGTAAAAGTGCGAACAAGAAACACAAAAGATTTCCCCGAGGGCATGGAT
TTGCTCGAGAATTCTCCAGGATATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGCGAGGTTTTACGCGTTCTAAACTTTGATCTCACCGTTGATC
ATCCGTACAAGCACTTGTGGACCTTGACAAAGTCCTACCTCGGCAGTGAT
CAAGTACAGAAATCCATCACCCAAGCTGGCTGGAATTTCTTGAATGACTC
ATTCAGAACCTATTTGCACGTAAGATACGACGCAAAAGAGGTTGCTACGG
CAGCGTTTTTCATGTCAGCCAAGCTTCATAATCATCCGCTGCCGGATGGG
ACTACCAGGGAACGAGCAACAGGCAAGCGAATCCTCGCTTGGCATGAGTT
CTTTAAAACAAATCTCAATCGCGTGGAGGAAATTTGCAAGATTCTTCTTG
ACATGTACGAATTGGAAGATAAGGCTTCCAATATGTTTAGAAACGGAACT
GGCGTTTTGGACTCTATACCCGCCAGTCATCCTGCAAAGCGTCACAAGAC
TGAGGGGGTTAAGCTAGAGTCAACTCCAATCGTGAACGACTCCCGACCAC
GAGTTGAGCCATACACCGCTTACCGTTAA