Gvermi3811.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3811.t1
Unique Name	Gvermi3811.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4511678..4513015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123355.JHYO01000015_gene1961
Preferred name	purD
PFAMs	GARS_A,GARS_C,GARS_N
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00090,RC00166
KEGG ko	ko:K01945
KEGG Reaction	R04144
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG Module	M00048
Evalue	3.81e-168
EggNOG OGs	COG0151@1\|root,COG0151@2\|Bacteria,1MUAH@1224\|Proteobacteria,2TQR5@28211\|Alphaproteobacteria,36XI8@31993\|Methylocystaceae
EC	6.3.4.13
Description	Phosphoribosylglycinamide synthetase, C domain
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3811	Gvermi3811	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4511678..4513015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3811.t1.start1	Gvermi3811.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4511678..4511680 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3811.t1.CDS1	Gvermi3811.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4511678..4513015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3811.t1.exon1	Gvermi3811.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4511678..4513015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3811.t1.stop1	Gvermi3811.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4513013..4513015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3811.t1	Gvermi3811.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4511678..4513015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4511678..4513015+
coding sequence from alignment at ScGOVlb_41:4511678..4513015+

mRNA sequence

>Gvermi3811.t1 ID=Gvermi3811.t1|Name=Gvermi3811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=446bp
MRLSDVPLKSLVVLVVGSGGREHALVHSISDSPYLKHLLAAPGNVGMLPQ
CECVPIAADDVDAIVNLAVERSVSFVVVGPEVPLVLGLVDRLNEKGISAF
GPSKAASVLEGSKVFMKAFLERNQIPTAWYASFTDATEAKRFIQKKGAPI
VVKADGLAAGKGVILAETVNDALAAVDTMMLDRKFGDAGSKIVVEEFLEG
EELSFFALLDGNVALPLASAQDHKAAFDGDKGPNTGGMGSYSPAPVCNNE
IRNQVMSKIVIPTMDGMRNEGREFRGILYCGLMVDKAGKVKVLEYNIRFG
DPECQVLCTRMRTDLLELLYRTASKRLGESEFKLEWDPLSTIVVVLAAKG
YPGSYKKGSIIRGIDVADSMDGVKVYHAGTALSPDGEFIADGGRVLGVTA
TGGTIRDAQDLAYKAIDAIDWEEGFYRKDIGWRAIEREKSSVVHR*

spliced messenger RNA

>Gvermi3811.t1 ID=Gvermi3811.t1|Name=Gvermi3811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_41:4511678..4513015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTTTCCGATGTGCCGTTGAAGTCTCTCGTGGTTCTTGTCGTAGG
TTCTGGTGGTCGGGAACACGCTTTGGTTCACAGTATTTCCGATTCCCCGT
ATTTGAAGCATCTTCTGGCAGCCCCGGGGAATGTGGGTATGTTACCACAA
TGCGAATGTGTCCCCATTGCTGCGGATGATGTGGATGCGATTGTTAACTT
GGCTGTTGAGAGATCTGTCTCTTTTGTAGTAGTCGGACCAGAAGTGCCAC
TTGTTCTTGGTCTGGTGGACAGATTGAATGAAAAAGGCATTTCTGCATTC
GGTCCATCTAAAGCAGCGTCTGTATTGGAAGGTTCGAAGGTATTCATGAA
AGCGTTTTTGGAAAGGAATCAAATTCCTACGGCATGGTACGCCTCATTCA
CGGACGCCACCGAGGCGAAAAGGTTTATTCAAAAAAAAGGGGCACCGATC
GTTGTTAAAGCAGATGGACTTGCTGCGGGAAAAGGAGTCATTTTGGCAGA
GACAGTCAATGATGCTCTCGCAGCTGTTGACACAATGATGCTTGACCGGA
AGTTCGGGGACGCAGGTTCAAAAATAGTGGTAGAAGAGTTCCTGGAAGGG
GAGGAACTCAGTTTTTTTGCTCTCTTGGATGGAAACGTCGCACTACCCTT
GGCGTCTGCTCAAGATCACAAGGCCGCCTTCGATGGTGACAAAGGGCCGA
ATACTGGAGGTATGGGGTCGTATTCCCCTGCACCAGTATGCAATAACGAG
ATACGAAATCAGGTTATGTCGAAAATTGTAATTCCAACGATGGACGGTAT
GAGAAATGAAGGTCGGGAGTTTCGCGGAATACTATACTGCGGATTAATGG
TGGATAAAGCCGGGAAAGTAAAGGTTCTTGAATATAACATTAGGTTTGGA
GACCCGGAATGCCAAGTGTTGTGTACGAGAATGCGTACAGATTTATTAGA
ATTACTTTACCGCACAGCGTCGAAGCGTCTTGGTGAAAGCGAGTTCAAAC
TTGAATGGGATCCTCTGTCAACCATAGTTGTGGTCCTTGCGGCAAAAGGC
TATCCCGGGTCGTACAAGAAAGGGAGCATTATTCGAGGGATAGATGTTGC
AGATTCCATGGATGGAGTGAAAGTATATCACGCTGGAACCGCTTTATCAC
CTGATGGAGAGTTCATTGCTGATGGAGGGAGAGTTCTCGGAGTCACTGCG
ACCGGCGGAACGATCAGGGACGCACAAGATCTAGCTTACAAAGCAATCGA
TGCTATAGACTGGGAAGAAGGCTTCTACCGAAAAGACATTGGATGGCGTG
CTATTGAAAGGGAGAAGAGTTCTGTTGTTCACCGTTAG

protein sequence of Gvermi3811.t1

>Gvermi3811.t1 ID=Gvermi3811.t1|Name=Gvermi3811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=446bp
MRLSDVPLKSLVVLVVGSGGREHALVHSISDSPYLKHLLAAPGNVGMLPQ
CECVPIAADDVDAIVNLAVERSVSFVVVGPEVPLVLGLVDRLNEKGISAF
GPSKAASVLEGSKVFMKAFLERNQIPTAWYASFTDATEAKRFIQKKGAPI
VVKADGLAAGKGVILAETVNDALAAVDTMMLDRKFGDAGSKIVVEEFLEG
EELSFFALLDGNVALPLASAQDHKAAFDGDKGPNTGGMGSYSPAPVCNNE
IRNQVMSKIVIPTMDGMRNEGREFRGILYCGLMVDKAGKVKVLEYNIRFG
DPECQVLCTRMRTDLLELLYRTASKRLGESEFKLEWDPLSTIVVVLAAKG
YPGSYKKGSIIRGIDVADSMDGVKVYHAGTALSPDGEFIADGGRVLGVTA
TGGTIRDAQDLAYKAIDAIDWEEGFYRKDIGWRAIEREKSSVVHR*

mRNA from alignment at ScGOVlb_41:4511678..4513015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3811.t1 ID=Gvermi3811.t1|Name=Gvermi3811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_41:4511678..4513015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACTTTCCGATGTGCCGTTGAAGTCTCTCGTGGTTCTTGTCGTAGG
TTCTGGTGGTCGGGAACACGCTTTGGTTCACAGTATTTCCGATTCCCCGT
ATTTGAAGCATCTTCTGGCAGCCCCGGGGAATGTGGGTATGTTACCACAA
TGCGAATGTGTCCCCATTGCTGCGGATGATGTGGATGCGATTGTTAACTT
GGCTGTTGAGAGATCTGTCTCTTTTGTAGTAGTCGGACCAGAAGTGCCAC
TTGTTCTTGGTCTGGTGGACAGATTGAATGAAAAAGGCATTTCTGCATTC
GGTCCATCTAAAGCAGCGTCTGTATTGGAAGGTTCGAAGGTATTCATGAA
AGCGTTTTTGGAAAGGAATCAAATTCCTACGGCATGGTACGCCTCATTCA
CGGACGCCACCGAGGCGAAAAGGTTTATTCAAAAAAAAGGGGCACCGATC
GTTGTTAAAGCAGATGGACTTGCTGCGGGAAAAGGAGTCATTTTGGCAGA
GACAGTCAATGATGCTCTCGCAGCTGTTGACACAATGATGCTTGACCGGA
AGTTCGGGGACGCAGGTTCAAAAATAGTGGTAGAAGAGTTCCTGGAAGGG
GAGGAACTCAGTTTTTTTGCTCTCTTGGATGGAAACGTCGCACTACCCTT
GGCGTCTGCTCAAGATCACAAGGCCGCCTTCGATGGTGACAAAGGGCCGA
ATACTGGAGGTATGGGGTCGTATTCCCCTGCACCAGTATGCAATAACGAG
ATACGAAATCAGGTTATGTCGAAAATTGTAATTCCAACGATGGACGGTAT
GAGAAATGAAGGTCGGGAGTTTCGCGGAATACTATACTGCGGATTAATGG
TGGATAAAGCCGGGAAAGTAAAGGTTCTTGAATATAACATTAGGTTTGGA
GACCCGGAATGCCAAGTGTTGTGTACGAGAATGCGTACAGATTTATTAGA
ATTACTTTACCGCACAGCGTCGAAGCGTCTTGGTGAAAGCGAGTTCAAAC
TTGAATGGGATCCTCTGTCAACCATAGTTGTGGTCCTTGCGGCAAAAGGC
TATCCCGGGTCGTACAAGAAAGGGAGCATTATTCGAGGGATAGATGTTGC
AGATTCCATGGATGGAGTGAAAGTATATCACGCTGGAACCGCTTTATCAC
CTGATGGAGAGTTCATTGCTGATGGAGGGAGAGTTCTCGGAGTCACTGCG
ACCGGCGGAACGATCAGGGACGCACAAGATCTAGCTTACAAAGCAATCGA
TGCTATAGACTGGGAAGAAGGCTTCTACCGAAAAGACATTGGATGGCGTG
CTATTGAAAGGGAGAAGAGTTCTGTTGTTCACCGTTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:4511678..4513015+

>Gvermi3811.t1 ID=Gvermi3811.t1|Name=Gvermi3811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1338bp|location=Sequence derived from alignment at ScGOVlb_41:4511678..4513015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACTTTCCGATGTGCCGTTGAAGTCTCTCGTGGTTCTTGTCGTAGG
TTCTGGTGGTCGGGAACACGCTTTGGTTCACAGTATTTCCGATTCCCCGT
ATTTGAAGCATCTTCTGGCAGCCCCGGGGAATGTGGGTATGTTACCACAA
TGCGAATGTGTCCCCATTGCTGCGGATGATGTGGATGCGATTGTTAACTT
GGCTGTTGAGAGATCTGTCTCTTTTGTAGTAGTCGGACCAGAAGTGCCAC
TTGTTCTTGGTCTGGTGGACAGATTGAATGAAAAAGGCATTTCTGCATTC
GGTCCATCTAAAGCAGCGTCTGTATTGGAAGGTTCGAAGGTATTCATGAA
AGCGTTTTTGGAAAGGAATCAAATTCCTACGGCATGGTACGCCTCATTCA
CGGACGCCACCGAGGCGAAAAGGTTTATTCAAAAAAAAGGGGCACCGATC
GTTGTTAAAGCAGATGGACTTGCTGCGGGAAAAGGAGTCATTTTGGCAGA
GACAGTCAATGATGCTCTCGCAGCTGTTGACACAATGATGCTTGACCGGA
AGTTCGGGGACGCAGGTTCAAAAATAGTGGTAGAAGAGTTCCTGGAAGGG
GAGGAACTCAGTTTTTTTGCTCTCTTGGATGGAAACGTCGCACTACCCTT
GGCGTCTGCTCAAGATCACAAGGCCGCCTTCGATGGTGACAAAGGGCCGA
ATACTGGAGGTATGGGGTCGTATTCCCCTGCACCAGTATGCAATAACGAG
ATACGAAATCAGGTTATGTCGAAAATTGTAATTCCAACGATGGACGGTAT
GAGAAATGAAGGTCGGGAGTTTCGCGGAATACTATACTGCGGATTAATGG
TGGATAAAGCCGGGAAAGTAAAGGTTCTTGAATATAACATTAGGTTTGGA
GACCCGGAATGCCAAGTGTTGTGTACGAGAATGCGTACAGATTTATTAGA
ATTACTTTACCGCACAGCGTCGAAGCGTCTTGGTGAAAGCGAGTTCAAAC
TTGAATGGGATCCTCTGTCAACCATAGTTGTGGTCCTTGCGGCAAAAGGC
TATCCCGGGTCGTACAAGAAAGGGAGCATTATTCGAGGGATAGATGTTGC
AGATTCCATGGATGGAGTGAAAGTATATCACGCTGGAACCGCTTTATCAC
CTGATGGAGAGTTCATTGCTGATGGAGGGAGAGTTCTCGGAGTCACTGCG
ACCGGCGGAACGATCAGGGACGCACAAGATCTAGCTTACAAAGCAATCGA
TGCTATAGACTGGGAAGAAGGCTTCTACCGAAAAGACATTGGATGGCGTG
CTATTGAAAGGGAGAAGAGTTCTGTTGTTCACCGTTAG