Gvermi3802.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3802.t1
Unique NameGvermi3802.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length590
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4490347..4492116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps23054
Max annot lvl2836|Bacillariophyta
Evalue7.27e-40
EggNOG OGsKOG4152@1|root,KOG4152@2759|Eukaryota,2XCM2@2836|Bacillariophyta
DescriptionGalactose oxidase, central domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3802Gvermi3802Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4490347..4492116 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3802.t1.stop1Gvermi3802.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4490347..4490349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3802.t1.CDS1Gvermi3802.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4490347..4492116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3802.t1.exon1Gvermi3802.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4490347..4492116 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3802.t1.start1Gvermi3802.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4492114..4492116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3802.t1Gvermi3802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4490347..4492116 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3802.t1 ID=Gvermi3802.t1|Name=Gvermi3802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=590bp
MASSTTEVTCGLLRLSVPVSACMPSVQLVDERAVRLSFSNFSGSVLFEAL
PRDRQHAAPSVVPALSEALPADPPIPEYSQVVSSLEGAPSVVPALPEPSQ
PFPCSQPVDSFQAHDISPSVQFPHFSHQYMQLTPNSSLSPCSSPLHAEPC
LLPLTQHPTPSIEPLAAPEPKSTEQPPVSEASDTKDAQKPKGTASQARGL
EKKRPKKKSSPQKRPIPMPKVEDRGAKQGKRVRFDESPVILSSPPKHSPK
ITVSTPWSLQQVADANLPPRRWGATLSKLDSDRFFLVGGESELAGFYNSL
SVYEAKENRWVLTGHDVPPMPEGGRAWHTTCVIDDILLVFGGEKQVNGER
VQTDDVFVYDTSYYSWYPPSYNGIKPSPRAGHCASIVPGSKNMAVYGGIN
GKKWLNDLFVLEELWTWKKIKPSAKSACPSARSYASLTPASGFLVLFGGN
NKTKCFNDVHLLSTDSYLWSEVTICGRAPKPRTGHCAVPSRNGKNVIVYG
GWDDQGLHRIFFSDVWELRIKSATECMWVCLFHGDQKSRTPGPRAGASMC
VGIDGECDAVMYGGWHQLTYYNDLSKLHVPKKSSKSSAR*
back to top

spliced messenger RNA

>Gvermi3802.t1 ID=Gvermi3802.t1|Name=Gvermi3802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_41:4490347..4492116- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCTCCACCACCGAGGTGACGTGCGGCCTTTTGCGCCTTTCGGT
GCCGGTTTCGGCATGTATGCCCAGTGTGCAGCTCGTCGATGAGCGCGCGG
TACGCCTTAGTTTCTCCAACTTCTCTGGCAGCGTGTTGTTTGAGGCACTC
CCGCGAGATCGCCAACATGCCGCACCTTCGGTGGTTCCTGCGCTCAGCGA
AGCGCTTCCTGCTGACCCCCCCATACCGGAATACTCCCAAGTCGTCTCAT
CCTTAGAAGGGGCGCCATCAGTTGTTCCTGCACTCCCGGAGCCGTCGCAG
CCATTTCCGTGCTCGCAGCCTGTGGATTCGTTTCAAGCGCATGATATCAG
CCCCTCTGTTCAATTTCCCCATTTCTCTCACCAATATATGCAGCTTACGC
CTAATTCATCGCTCTCTCCGTGTTCTTCCCCGCTTCATGCAGAGCCGTGT
TTGCTCCCCCTCACTCAGCATCCCACTCCTTCTATTGAGCCGCTTGCCGC
ACCCGAGCCCAAATCTACCGAACAACCCCCTGTTTCAGAAGCTTCTGATA
CAAAAGATGCTCAAAAACCAAAGGGTACAGCTTCTCAAGCGCGTGGTCTG
GAAAAGAAACGACCAAAGAAGAAGTCAAGTCCTCAGAAACGCCCCATTCC
CATGCCCAAGGTTGAGGATCGGGGGGCCAAACAGGGGAAACGCGTGCGCT
TTGACGAAAGCCCCGTCATTCTCAGCAGTCCTCCCAAACACTCCCCGAAA
ATTACAGTTTCCACACCGTGGAGCCTGCAACAGGTTGCTGATGCCAATCT
ACCACCACGACGATGGGGTGCCACTCTATCCAAGTTGGATTCTGACCGGT
TTTTCTTGGTGGGTGGTGAATCTGAACTCGCGGGCTTTTACAACTCTCTG
TCAGTGTACGAAGCAAAAGAAAATCGGTGGGTGCTTACGGGACACGACGT
TCCTCCTATGCCGGAAGGCGGACGGGCTTGGCACACCACTTGCGTGATTG
ATGACATTTTGCTGGTGTTCGGTGGTGAGAAGCAAGTTAATGGAGAACGT
GTACAGACAGATGACGTGTTTGTTTACGACACCTCGTACTATTCGTGGTA
TCCGCCTTCCTACAACGGTATAAAGCCGTCGCCTCGCGCTGGTCATTGTG
CATCGATTGTTCCAGGTTCGAAAAATATGGCTGTATATGGTGGTATCAAC
GGCAAAAAGTGGCTAAATGACCTTTTTGTACTGGAGGAACTGTGGACGTG
GAAGAAGATCAAACCATCTGCAAAGAGTGCTTGTCCAAGTGCACGATCTT
ATGCAAGTTTAACACCCGCGTCTGGCTTTCTCGTGCTCTTTGGCGGAAAT
AACAAGACAAAATGTTTTAATGATGTGCATCTTCTGTCAACAGATTCGTA
CTTATGGTCTGAGGTTACGATTTGTGGACGGGCTCCAAAGCCGAGAACTG
GACACTGTGCAGTACCTTCTAGAAATGGAAAAAATGTAATTGTGTATGGT
GGTTGGGATGACCAGGGCTTGCATCGCATTTTCTTTTCTGATGTGTGGGA
ATTGCGTATCAAGAGCGCCACTGAATGTATGTGGGTTTGTTTGTTTCATG
GAGATCAGAAGAGTAGAACGCCTGGTCCACGAGCTGGTGCTTCCATGTGT
GTTGGAATTGATGGCGAATGTGATGCTGTTATGTACGGCGGATGGCATCA
GCTCACGTACTACAATGATTTGTCAAAGCTTCATGTTCCGAAGAAGAGTT
CAAAATCGTCCGCAAGATAA
back to top

protein sequence of Gvermi3802.t1

>Gvermi3802.t1 ID=Gvermi3802.t1|Name=Gvermi3802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=590bp
MASSTTEVTCGLLRLSVPVSACMPSVQLVDERAVRLSFSNFSGSVLFEAL
PRDRQHAAPSVVPALSEALPADPPIPEYSQVVSSLEGAPSVVPALPEPSQ
PFPCSQPVDSFQAHDISPSVQFPHFSHQYMQLTPNSSLSPCSSPLHAEPC
LLPLTQHPTPSIEPLAAPEPKSTEQPPVSEASDTKDAQKPKGTASQARGL
EKKRPKKKSSPQKRPIPMPKVEDRGAKQGKRVRFDESPVILSSPPKHSPK
ITVSTPWSLQQVADANLPPRRWGATLSKLDSDRFFLVGGESELAGFYNSL
SVYEAKENRWVLTGHDVPPMPEGGRAWHTTCVIDDILLVFGGEKQVNGER
VQTDDVFVYDTSYYSWYPPSYNGIKPSPRAGHCASIVPGSKNMAVYGGIN
GKKWLNDLFVLEELWTWKKIKPSAKSACPSARSYASLTPASGFLVLFGGN
NKTKCFNDVHLLSTDSYLWSEVTICGRAPKPRTGHCAVPSRNGKNVIVYG
GWDDQGLHRIFFSDVWELRIKSATECMWVCLFHGDQKSRTPGPRAGASMC
VGIDGECDAVMYGGWHQLTYYNDLSKLHVPKKSSKSSAR*
back to top

mRNA from alignment at ScGOVlb_41:4490347..4492116-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3802.t1 ID=Gvermi3802.t1|Name=Gvermi3802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_41:4490347..4492116- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCTCCACCACCGAGGTGACGTGCGGCCTTTTGCGCCTTTCGGT
GCCGGTTTCGGCATGTATGCCCAGTGTGCAGCTCGTCGATGAGCGCGCGG
TACGCCTTAGTTTCTCCAACTTCTCTGGCAGCGTGTTGTTTGAGGCACTC
CCGCGAGATCGCCAACATGCCGCACCTTCGGTGGTTCCTGCGCTCAGCGA
AGCGCTTCCTGCTGACCCCCCCATACCGGAATACTCCCAAGTCGTCTCAT
CCTTAGAAGGGGCGCCATCAGTTGTTCCTGCACTCCCGGAGCCGTCGCAG
CCATTTCCGTGCTCGCAGCCTGTGGATTCGTTTCAAGCGCATGATATCAG
CCCCTCTGTTCAATTTCCCCATTTCTCTCACCAATATATGCAGCTTACGC
CTAATTCATCGCTCTCTCCGTGTTCTTCCCCGCTTCATGCAGAGCCGTGT
TTGCTCCCCCTCACTCAGCATCCCACTCCTTCTATTGAGCCGCTTGCCGC
ACCCGAGCCCAAATCTACCGAACAACCCCCTGTTTCAGAAGCTTCTGATA
CAAAAGATGCTCAAAAACCAAAGGGTACAGCTTCTCAAGCGCGTGGTCTG
GAAAAGAAACGACCAAAGAAGAAGTCAAGTCCTCAGAAACGCCCCATTCC
CATGCCCAAGGTTGAGGATCGGGGGGCCAAACAGGGGAAACGCGTGCGCT
TTGACGAAAGCCCCGTCATTCTCAGCAGTCCTCCCAAACACTCCCCGAAA
ATTACAGTTTCCACACCGTGGAGCCTGCAACAGGTTGCTGATGCCAATCT
ACCACCACGACGATGGGGTGCCACTCTATCCAAGTTGGATTCTGACCGGT
TTTTCTTGGTGGGTGGTGAATCTGAACTCGCGGGCTTTTACAACTCTCTG
TCAGTGTACGAAGCAAAAGAAAATCGGTGGGTGCTTACGGGACACGACGT
TCCTCCTATGCCGGAAGGCGGACGGGCTTGGCACACCACTTGCGTGATTG
ATGACATTTTGCTGGTGTTCGGTGGTGAGAAGCAAGTTAATGGAGAACGT
GTACAGACAGATGACGTGTTTGTTTACGACACCTCGTACTATTCGTGGTA
TCCGCCTTCCTACAACGGTATAAAGCCGTCGCCTCGCGCTGGTCATTGTG
CATCGATTGTTCCAGGTTCGAAAAATATGGCTGTATATGGTGGTATCAAC
GGCAAAAAGTGGCTAAATGACCTTTTTGTACTGGAGGAACTGTGGACGTG
GAAGAAGATCAAACCATCTGCAAAGAGTGCTTGTCCAAGTGCACGATCTT
ATGCAAGTTTAACACCCGCGTCTGGCTTTCTCGTGCTCTTTGGCGGAAAT
AACAAGACAAAATGTTTTAATGATGTGCATCTTCTGTCAACAGATTCGTA
CTTATGGTCTGAGGTTACGATTTGTGGACGGGCTCCAAAGCCGAGAACTG
GACACTGTGCAGTACCTTCTAGAAATGGAAAAAATGTAATTGTGTATGGT
GGTTGGGATGACCAGGGCTTGCATCGCATTTTCTTTTCTGATGTGTGGGA
ATTGCGTATCAAGAGCGCCACTGAATGTATGTGGGTTTGTTTGTTTCATG
GAGATCAGAAGAGTAGAACGCCTGGTCCACGAGCTGGTGCTTCCATGTGT
GTTGGAATTGATGGCGAATGTGATGCTGTTATGTACGGCGGATGGCATCA
GCTCACGTACTACAATGATTTGTCAAAGCTTCATGTTCCGAAGAAGAGTT
CAAAATCGTCCGCAAGATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:4490347..4492116-

>Gvermi3802.t1 ID=Gvermi3802.t1|Name=Gvermi3802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1770bp|location=Sequence derived from alignment at ScGOVlb_41:4490347..4492116- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCTCCACCACCGAGGTGACGTGCGGCCTTTTGCGCCTTTCGGT
GCCGGTTTCGGCATGTATGCCCAGTGTGCAGCTCGTCGATGAGCGCGCGG
TACGCCTTAGTTTCTCCAACTTCTCTGGCAGCGTGTTGTTTGAGGCACTC
CCGCGAGATCGCCAACATGCCGCACCTTCGGTGGTTCCTGCGCTCAGCGA
AGCGCTTCCTGCTGACCCCCCCATACCGGAATACTCCCAAGTCGTCTCAT
CCTTAGAAGGGGCGCCATCAGTTGTTCCTGCACTCCCGGAGCCGTCGCAG
CCATTTCCGTGCTCGCAGCCTGTGGATTCGTTTCAAGCGCATGATATCAG
CCCCTCTGTTCAATTTCCCCATTTCTCTCACCAATATATGCAGCTTACGC
CTAATTCATCGCTCTCTCCGTGTTCTTCCCCGCTTCATGCAGAGCCGTGT
TTGCTCCCCCTCACTCAGCATCCCACTCCTTCTATTGAGCCGCTTGCCGC
ACCCGAGCCCAAATCTACCGAACAACCCCCTGTTTCAGAAGCTTCTGATA
CAAAAGATGCTCAAAAACCAAAGGGTACAGCTTCTCAAGCGCGTGGTCTG
GAAAAGAAACGACCAAAGAAGAAGTCAAGTCCTCAGAAACGCCCCATTCC
CATGCCCAAGGTTGAGGATCGGGGGGCCAAACAGGGGAAACGCGTGCGCT
TTGACGAAAGCCCCGTCATTCTCAGCAGTCCTCCCAAACACTCCCCGAAA
ATTACAGTTTCCACACCGTGGAGCCTGCAACAGGTTGCTGATGCCAATCT
ACCACCACGACGATGGGGTGCCACTCTATCCAAGTTGGATTCTGACCGGT
TTTTCTTGGTGGGTGGTGAATCTGAACTCGCGGGCTTTTACAACTCTCTG
TCAGTGTACGAAGCAAAAGAAAATCGGTGGGTGCTTACGGGACACGACGT
TCCTCCTATGCCGGAAGGCGGACGGGCTTGGCACACCACTTGCGTGATTG
ATGACATTTTGCTGGTGTTCGGTGGTGAGAAGCAAGTTAATGGAGAACGT
GTACAGACAGATGACGTGTTTGTTTACGACACCTCGTACTATTCGTGGTA
TCCGCCTTCCTACAACGGTATAAAGCCGTCGCCTCGCGCTGGTCATTGTG
CATCGATTGTTCCAGGTTCGAAAAATATGGCTGTATATGGTGGTATCAAC
GGCAAAAAGTGGCTAAATGACCTTTTTGTACTGGAGGAACTGTGGACGTG
GAAGAAGATCAAACCATCTGCAAAGAGTGCTTGTCCAAGTGCACGATCTT
ATGCAAGTTTAACACCCGCGTCTGGCTTTCTCGTGCTCTTTGGCGGAAAT
AACAAGACAAAATGTTTTAATGATGTGCATCTTCTGTCAACAGATTCGTA
CTTATGGTCTGAGGTTACGATTTGTGGACGGGCTCCAAAGCCGAGAACTG
GACACTGTGCAGTACCTTCTAGAAATGGAAAAAATGTAATTGTGTATGGT
GGTTGGGATGACCAGGGCTTGCATCGCATTTTCTTTTCTGATGTGTGGGA
ATTGCGTATCAAGAGCGCCACTGAATGTATGTGGGTTTGTTTGTTTCATG
GAGATCAGAAGAGTAGAACGCCTGGTCCACGAGCTGGTGCTTCCATGTGT
GTTGGAATTGATGGCGAATGTGATGCTGTTATGTACGGCGGATGGCATCA
GCTCACGTACTACAATGATTTGTCAAAGCTTCATGTTCCGAAGAAGAGTT
CAAAATCGTCCGCAAGATAA
back to top