Gvermi3787.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3787.t1
Unique Name	Gvermi3787.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4281850..4282671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LLW4
PFAMs	Sm_multidrug_ex
Max annot lvl	2759\|Eukaryota
Evalue	1.52e-43
EggNOG OGs	28NC2@1\|root,2QUXG@2759\|Eukaryota
Description	Putative small multi-drug export protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3787	Gvermi3787	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4281850..4282671 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3787.t1.start1	Gvermi3787.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4281850..4281852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3787.t1.CDS1	Gvermi3787.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4281850..4282671 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3787.t1.exon1	Gvermi3787.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4281850..4282671 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3787.t1.stop1	Gvermi3787.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4282669..4282671 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3787.t1	Gvermi3787.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4281850..4282671 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4281850..4282671+
coding sequence from alignment at ScGOVlb_41:4281850..4282671+

mRNA sequence

>Gvermi3787.t1 ID=Gvermi3787.t1|Name=Gvermi3787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=274bp
MAASKTASRRRVARGIASIAAVGAVLTLCTARAHALAPPSPSPAITAVQQ
TKATLTNPLHSQSTLPLGSQAAAPRVAFHTPAHMPSGHEAANFLRSRGLS
DSLVVLLISALPVVELRGGIPVGFLLGVPPLQTFLLSVIGNMLPVIPVIA
LLRLPLVQRIASPVLDRARKKAESVSNSSSQAKALALFVGVPLPGTGAWT
GCLVAFVLDMPFRSAFFSLLVGVVSAAFIVTSLCLMGRTGGAIAASVLLG
TGLLSLLSDSRRSPVPTDDDVGR*

spliced messenger RNA

>Gvermi3787.t1 ID=Gvermi3787.t1|Name=Gvermi3787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_41:4281850..4282671+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTCGAAAACCGCGTCCAGGCGTAGAGTAGCTCGCGGAATCGC
TTCCATCGCCGCCGTCGGCGCCGTTCTTACCTTGTGCACCGCGCGCGCGC
ATGCTCTCGCGCCCCCTTCCCCGTCGCCCGCGATCACCGCCGTGCAACAA
ACCAAGGCAACGTTGACCAACCCGTTGCATTCTCAAAGCACCCTGCCGCT
GGGCAGTCAAGCAGCCGCCCCTCGCGTTGCTTTCCATACGCCTGCTCATA
TGCCAAGCGGTCATGAGGCTGCAAATTTTCTCCGCTCGCGAGGACTGAGC
GATAGTCTCGTCGTGCTGCTAATCTCCGCCCTGCCCGTGGTCGAGCTCAG
AGGCGGTATCCCGGTAGGATTCCTTCTCGGTGTCCCGCCGCTGCAAACGT
TTTTGTTATCAGTCATAGGCAACATGCTGCCGGTGATTCCCGTGATTGCG
CTTCTGAGGCTGCCTTTGGTCCAGCGCATAGCCTCGCCCGTGTTAGATAG
AGCGAGGAAAAAAGCCGAGTCAGTGAGCAATTCTTCGTCCCAGGCGAAAG
CGTTGGCTCTTTTTGTGGGCGTTCCACTGCCTGGCACTGGAGCGTGGACC
GGGTGCCTGGTGGCATTCGTGCTTGACATGCCCTTTCGCAGCGCGTTTTT
TTCCCTTTTGGTTGGTGTTGTATCGGCCGCGTTTATCGTTACTTCTCTCT
GCCTCATGGGAAGGACGGGCGGCGCCATTGCTGCCTCTGTATTGTTAGGC
ACTGGACTTCTTTCTCTGCTTAGTGACTCCAGGCGTTCTCCCGTTCCGAC
AGATGATGATGTCGGTCGCTGA

protein sequence of Gvermi3787.t1

>Gvermi3787.t1 ID=Gvermi3787.t1|Name=Gvermi3787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=274bp
MAASKTASRRRVARGIASIAAVGAVLTLCTARAHALAPPSPSPAITAVQQ
TKATLTNPLHSQSTLPLGSQAAAPRVAFHTPAHMPSGHEAANFLRSRGLS
DSLVVLLISALPVVELRGGIPVGFLLGVPPLQTFLLSVIGNMLPVIPVIA
LLRLPLVQRIASPVLDRARKKAESVSNSSSQAKALALFVGVPLPGTGAWT
GCLVAFVLDMPFRSAFFSLLVGVVSAAFIVTSLCLMGRTGGAIAASVLLG
TGLLSLLSDSRRSPVPTDDDVGR*

mRNA from alignment at ScGOVlb_41:4281850..4282671+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3787.t1 ID=Gvermi3787.t1|Name=Gvermi3787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_41:4281850..4282671+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCTCGAAAACCGCGTCCAGGCGTAGAGTAGCTCGCGGAATCGC
TTCCATCGCCGCCGTCGGCGCCGTTCTTACCTTGTGCACCGCGCGCGCGC
ATGCTCTCGCGCCCCCTTCCCCGTCGCCCGCGATCACCGCCGTGCAACAA
ACCAAGGCAACGTTGACCAACCCGTTGCATTCTCAAAGCACCCTGCCGCT
GGGCAGTCAAGCAGCCGCCCCTCGCGTTGCTTTCCATACGCCTGCTCATA
TGCCAAGCGGTCATGAGGCTGCAAATTTTCTCCGCTCGCGAGGACTGAGC
GATAGTCTCGTCGTGCTGCTAATCTCCGCCCTGCCCGTGGTCGAGCTCAG
AGGCGGTATCCCGGTAGGATTCCTTCTCGGTGTCCCGCCGCTGCAAACGT
TTTTGTTATCAGTCATAGGCAACATGCTGCCGGTGATTCCCGTGATTGCG
CTTCTGAGGCTGCCTTTGGTCCAGCGCATAGCCTCGCCCGTGTTAGATAG
AGCGAGGAAAAAAGCCGAGTCAGTGAGCAATTCTTCGTCCCAGGCGAAAG
CGTTGGCTCTTTTTGTGGGCGTTCCACTGCCTGGCACTGGAGCGTGGACC
GGGTGCCTGGTGGCATTCGTGCTTGACATGCCCTTTCGCAGCGCGTTTTT
TTCCCTTTTGGTTGGTGTTGTATCGGCCGCGTTTATCGTTACTTCTCTCT
GCCTCATGGGAAGGACGGGCGGCGCCATTGCTGCCTCTGTATTGTTAGGC
ACTGGACTTCTTTCTCTGCTTAGTGACTCCAGGCGTTCTCCCGTTCCGAC
AGATGATGATGTCGGTCGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:4281850..4282671+

>Gvermi3787.t1 ID=Gvermi3787.t1|Name=Gvermi3787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=822bp|location=Sequence derived from alignment at ScGOVlb_41:4281850..4282671+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCTCGAAAACCGCGTCCAGGCGTAGAGTAGCTCGCGGAATCGC
TTCCATCGCCGCCGTCGGCGCCGTTCTTACCTTGTGCACCGCGCGCGCGC
ATGCTCTCGCGCCCCCTTCCCCGTCGCCCGCGATCACCGCCGTGCAACAA
ACCAAGGCAACGTTGACCAACCCGTTGCATTCTCAAAGCACCCTGCCGCT
GGGCAGTCAAGCAGCCGCCCCTCGCGTTGCTTTCCATACGCCTGCTCATA
TGCCAAGCGGTCATGAGGCTGCAAATTTTCTCCGCTCGCGAGGACTGAGC
GATAGTCTCGTCGTGCTGCTAATCTCCGCCCTGCCCGTGGTCGAGCTCAG
AGGCGGTATCCCGGTAGGATTCCTTCTCGGTGTCCCGCCGCTGCAAACGT
TTTTGTTATCAGTCATAGGCAACATGCTGCCGGTGATTCCCGTGATTGCG
CTTCTGAGGCTGCCTTTGGTCCAGCGCATAGCCTCGCCCGTGTTAGATAG
AGCGAGGAAAAAAGCCGAGTCAGTGAGCAATTCTTCGTCCCAGGCGAAAG
CGTTGGCTCTTTTTGTGGGCGTTCCACTGCCTGGCACTGGAGCGTGGACC
GGGTGCCTGGTGGCATTCGTGCTTGACATGCCCTTTCGCAGCGCGTTTTT
TTCCCTTTTGGTTGGTGTTGTATCGGCCGCGTTTATCGTTACTTCTCTCT
GCCTCATGGGAAGGACGGGCGGCGCCATTGCTGCCTCTGTATTGTTAGGC
ACTGGACTTCTTTCTCTGCTTAGTGACTCCAGGCGTTCTCCCGTTCCGAC
AGATGATGATGTCGGTCGCTGA