Gvermi3784.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3784.t1
Unique Name	Gvermi3784.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	538

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4271377..4272990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121921.KB898707_gene779
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.43e-43
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria
Description	ASPIC and UnbV
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3784	Gvermi3784	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4271377..4272990 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3784.t1.start1	Gvermi3784.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4271377..4271379 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3784.t1.CDS1	Gvermi3784.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4271377..4272990 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3784.t1.exon1	Gvermi3784.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4271377..4272990 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3784.t1.stop1	Gvermi3784.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4272988..4272990 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3784.t1	Gvermi3784.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4271377..4272990 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4271377..4272990+
coding sequence from alignment at ScGOVlb_41:4271377..4272990+

mRNA sequence

>Gvermi3784.t1 ID=Gvermi3784.t1|Name=Gvermi3784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MSPSAPCSICHATTLVPFSSRRERASDMPRSTRMLAAFLVAAAAAACLAS
AAKPAPTFRDVTVQAGIDLRRPKLKKYGAPSVADLDRDGWPDLLFCHHDQ
TFEELYFNNRDGTFTKAQWGVWHDTHGLNAWPVSPTTKTMRFSMSVGGNF
GKDPNPPFVFEVNPSTRAITRVDAEAGLDVFRGRGRSAIYLDLSQGRHPQ
FLDIIYTNAFSLDGKSQFAYEGIDGDKFKPRQLKGGFEVSDNSLAMVTDV
DNDGKVEVLAMWRFTMYKVTGDFELTDITNQVLPSSVPRDGVIAVAELDF
DNDGDFDLYVARTRVGPWLPDVAYDDILLENRNGKYVDVSARAGIPKDTQ
SHGVTAGDFNNDGWMDIYVSQYNEPDYMLINNGDRTFRRVDGLTTRPDDV
RGDNAVAVDYDLDGRLDLISSQGDHNVADLGGSYRIFKNTLDMSEGNANF
INVRVGVPWDRSCTPMHAEVLVNAGNLWIKRRVGSPGTEVSNSYLETLHF
GLGSRTEVTAIYVKYANGYVVMRRNVEHGQTVVLGLL*

spliced messenger RNA

>Gvermi3784.t1 ID=Gvermi3784.t1|Name=Gvermi3784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_41:4271377..4272990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCGAGCGCTCCGTGCTCCATATGCCACGCCACTACCCTCGTGCC
CTTCTCGTCTCGTCGTGAGCGCGCTTCCGATATGCCACGCTCCACCCGCA
TGCTCGCCGCCTTTCTCGTGgccgccgccgccgccgcctgtctcgcctcc
gccgccAAGCCCGCCCCGACCTTTCGCGACGTTACCGTGCAGGCCGGCAT
CGACCTGCGCCGCCCCAAGCTCAAAAAGTACGGCGCACCGTCCGTGGCCG
ATTTGGATCGCGACGGATGGCCTGACCTGCTTTTCTGTCACCATGACCAA
ACTTTCGAGGAGCTGTACTTCAACAACCGCGACGGCACCTTCACCAAGGC
GCAATGGGGCGTGTGGCACGACACACACGGACTCAACGCCTGGCCCGTGT
CGCCCACGACCAAAACCATGCGCTTCTCCATGTCGGTTGGCGGCAACTTC
GGCAAGGACCCCAACCCGCCGTTTGTGTTCGAGGTGAACCCGTCCACGCG
CGCCATAACGCGCGTCGACGCCGAGGCGGGGCTGGATGTGTTCCGCGGGC
GCGGGCGCTCCGCCATCTATCTGGACCTGTCACAGGGCCGTCACCCGCAG
TTTCTGGACATTATCTACACCAACGCGTTCTCGCTGGACGGCAAGTCACA
GTTTGCATACGAGGGTATCGATGGGGACAAATTCAAGCCGCGCCAACTGA
AGGGCGGGTTCGAGGTGTCGGACAACTCGCTGGCCATGGTCACCGACGTG
GACAACGACGGGAAGGTGGAGGTCTTGGCCATGTGGCGCTTCACCATGTA
CAAGGTGACCGGCGACTTTGAGCTGACGGACATCACTAACCAGGTGTTGC
CGAGCAGCGTGCCGCGCGACGGGGTGATTGCGGTGGCCGAGTTGGACTTT
GACAACGACGGCGACTTTGATCTGTACGTAGCGCGCACGCGCGTCGGGCC
GTGGTTGCCAGACGTTGCGTACGACGACATTTTGTTGGAGAATCGTAATG
GAAAGTATGTAGACGTGAGCGCACGGGCGGGCATTCCAAAGGACACGCAG
TCACACGGGGTGACGGCGGGTGACTTCAACAATGACGGGTGGATGGATAT
CTACGTGAGCCAGTACAACGAGCCGGACTACATGCTGATCAACAACGGCG
ACCGGACGTTCCGGCGCGTGGATGGGCTGACGACGCGGCCGGATGACGTG
CGCGGCGACAACGCCGTGGCGGTGGACTACGACCTAGACGGGCGCTTGGA
CTTGATCTCGAGCCAGGGCGACCACAACGTCGCGGATCTGGGGGGGTCGT
ACCGCATCTTCAAGAACACGCTGGACATGTCGGAGGGCAACGCCAACTTC
ATCAACGTGCGCGTGGGGGTGCCGTGGGACCGGAGCTGCACGCCGATGCA
CGCGGAGGTGCTGGTGAATGCGGGGAACCTGTGGATCAAGCGGCGGGTGG
GGTCGCCAGGCACGGAGGTGTCGAACTCGTATCTGGAGACGCTGCACTTC
GGGCTGGGGTCGCGCACGGAGGTGACTGCGATCTACGTCAAGTATGCCAA
CGGGTACGTGGTGATGAGACGGAACGTGGAGCACGGGCAGACGGTTGTGC
TCGGGCTGCTGTGA

protein sequence of Gvermi3784.t1

>Gvermi3784.t1 ID=Gvermi3784.t1|Name=Gvermi3784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MSPSAPCSICHATTLVPFSSRRERASDMPRSTRMLAAFLVAAAAAACLAS
AAKPAPTFRDVTVQAGIDLRRPKLKKYGAPSVADLDRDGWPDLLFCHHDQ
TFEELYFNNRDGTFTKAQWGVWHDTHGLNAWPVSPTTKTMRFSMSVGGNF
GKDPNPPFVFEVNPSTRAITRVDAEAGLDVFRGRGRSAIYLDLSQGRHPQ
FLDIIYTNAFSLDGKSQFAYEGIDGDKFKPRQLKGGFEVSDNSLAMVTDV
DNDGKVEVLAMWRFTMYKVTGDFELTDITNQVLPSSVPRDGVIAVAELDF
DNDGDFDLYVARTRVGPWLPDVAYDDILLENRNGKYVDVSARAGIPKDTQ
SHGVTAGDFNNDGWMDIYVSQYNEPDYMLINNGDRTFRRVDGLTTRPDDV
RGDNAVAVDYDLDGRLDLISSQGDHNVADLGGSYRIFKNTLDMSEGNANF
INVRVGVPWDRSCTPMHAEVLVNAGNLWIKRRVGSPGTEVSNSYLETLHF
GLGSRTEVTAIYVKYANGYVVMRRNVEHGQTVVLGLL*

mRNA from alignment at ScGOVlb_41:4271377..4272990+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3784.t1 ID=Gvermi3784.t1|Name=Gvermi3784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_41:4271377..4272990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCCGAGCGCTCCGTGCTCCATATGCCACGCCACTACCCTCGTGCC
CTTCTCGTCTCGTCGTGAGCGCGCTTCCGATATGCCACGCTCCACCCGCA
TGCTCGCCGCCTTTCTCGTGgccgccgccgccgccgcctgtctcgcctcc
gccgccAAGCCCGCCCCGACCTTTCGCGACGTTACCGTGCAGGCCGGCAT
CGACCTGCGCCGCCCCAAGCTCAAAAAGTACGGCGCACCGTCCGTGGCCG
ATTTGGATCGCGACGGATGGCCTGACCTGCTTTTCTGTCACCATGACCAA
ACTTTCGAGGAGCTGTACTTCAACAACCGCGACGGCACCTTCACCAAGGC
GCAATGGGGCGTGTGGCACGACACACACGGACTCAACGCCTGGCCCGTGT
CGCCCACGACCAAAACCATGCGCTTCTCCATGTCGGTTGGCGGCAACTTC
GGCAAGGACCCCAACCCGCCGTTTGTGTTCGAGGTGAACCCGTCCACGCG
CGCCATAACGCGCGTCGACGCCGAGGCGGGGCTGGATGTGTTCCGCGGGC
GCGGGCGCTCCGCCATCTATCTGGACCTGTCACAGGGCCGTCACCCGCAG
TTTCTGGACATTATCTACACCAACGCGTTCTCGCTGGACGGCAAGTCACA
GTTTGCATACGAGGGTATCGATGGGGACAAATTCAAGCCGCGCCAACTGA
AGGGCGGGTTCGAGGTGTCGGACAACTCGCTGGCCATGGTCACCGACGTG
GACAACGACGGGAAGGTGGAGGTCTTGGCCATGTGGCGCTTCACCATGTA
CAAGGTGACCGGCGACTTTGAGCTGACGGACATCACTAACCAGGTGTTGC
CGAGCAGCGTGCCGCGCGACGGGGTGATTGCGGTGGCCGAGTTGGACTTT
GACAACGACGGCGACTTTGATCTGTACGTAGCGCGCACGCGCGTCGGGCC
GTGGTTGCCAGACGTTGCGTACGACGACATTTTGTTGGAGAATCGTAATG
GAAAGTATGTAGACGTGAGCGCACGGGCGGGCATTCCAAAGGACACGCAG
TCACACGGGGTGACGGCGGGTGACTTCAACAATGACGGGTGGATGGATAT
CTACGTGAGCCAGTACAACGAGCCGGACTACATGCTGATCAACAACGGCG
ACCGGACGTTCCGGCGCGTGGATGGGCTGACGACGCGGCCGGATGACGTG
CGCGGCGACAACGCCGTGGCGGTGGACTACGACCTAGACGGGCGCTTGGA
CTTGATCTCGAGCCAGGGCGACCACAACGTCGCGGATCTGGGGGGGTCGT
ACCGCATCTTCAAGAACACGCTGGACATGTCGGAGGGCAACGCCAACTTC
ATCAACGTGCGCGTGGGGGTGCCGTGGGACCGGAGCTGCACGCCGATGCA
CGCGGAGGTGCTGGTGAATGCGGGGAACCTGTGGATCAAGCGGCGGGTGG
GGTCGCCAGGCACGGAGGTGTCGAACTCGTATCTGGAGACGCTGCACTTC
GGGCTGGGGTCGCGCACGGAGGTGACTGCGATCTACGTCAAGTATGCCAA
CGGGTACGTGGTGATGAGACGGAACGTGGAGCACGGGCAGACGGTTGTGC
TCGGGCTGCTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:4271377..4272990+

>Gvermi3784.t1 ID=Gvermi3784.t1|Name=Gvermi3784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_41:4271377..4272990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCCGAGCGCTCCGTGCTCCATATGCCACGCCACTACCCTCGTGCC
CTTCTCGTCTCGTCGTGAGCGCGCTTCCGATATGCCACGCTCCACCCGCA
TGCTCGCCGCCTTTCTCGTGgccgccgccgccgccgcctgtctcgcctcc
gccgccAAGCCCGCCCCGACCTTTCGCGACGTTACCGTGCAGGCCGGCAT
CGACCTGCGCCGCCCCAAGCTCAAAAAGTACGGCGCACCGTCCGTGGCCG
ATTTGGATCGCGACGGATGGCCTGACCTGCTTTTCTGTCACCATGACCAA
ACTTTCGAGGAGCTGTACTTCAACAACCGCGACGGCACCTTCACCAAGGC
GCAATGGGGCGTGTGGCACGACACACACGGACTCAACGCCTGGCCCGTGT
CGCCCACGACCAAAACCATGCGCTTCTCCATGTCGGTTGGCGGCAACTTC
GGCAAGGACCCCAACCCGCCGTTTGTGTTCGAGGTGAACCCGTCCACGCG
CGCCATAACGCGCGTCGACGCCGAGGCGGGGCTGGATGTGTTCCGCGGGC
GCGGGCGCTCCGCCATCTATCTGGACCTGTCACAGGGCCGTCACCCGCAG
TTTCTGGACATTATCTACACCAACGCGTTCTCGCTGGACGGCAAGTCACA
GTTTGCATACGAGGGTATCGATGGGGACAAATTCAAGCCGCGCCAACTGA
AGGGCGGGTTCGAGGTGTCGGACAACTCGCTGGCCATGGTCACCGACGTG
GACAACGACGGGAAGGTGGAGGTCTTGGCCATGTGGCGCTTCACCATGTA
CAAGGTGACCGGCGACTTTGAGCTGACGGACATCACTAACCAGGTGTTGC
CGAGCAGCGTGCCGCGCGACGGGGTGATTGCGGTGGCCGAGTTGGACTTT
GACAACGACGGCGACTTTGATCTGTACGTAGCGCGCACGCGCGTCGGGCC
GTGGTTGCCAGACGTTGCGTACGACGACATTTTGTTGGAGAATCGTAATG
GAAAGTATGTAGACGTGAGCGCACGGGCGGGCATTCCAAAGGACACGCAG
TCACACGGGGTGACGGCGGGTGACTTCAACAATGACGGGTGGATGGATAT
CTACGTGAGCCAGTACAACGAGCCGGACTACATGCTGATCAACAACGGCG
ACCGGACGTTCCGGCGCGTGGATGGGCTGACGACGCGGCCGGATGACGTG
CGCGGCGACAACGCCGTGGCGGTGGACTACGACCTAGACGGGCGCTTGGA
CTTGATCTCGAGCCAGGGCGACCACAACGTCGCGGATCTGGGGGGGTCGT
ACCGCATCTTCAAGAACACGCTGGACATGTCGGAGGGCAACGCCAACTTC
ATCAACGTGCGCGTGGGGGTGCCGTGGGACCGGAGCTGCACGCCGATGCA
CGCGGAGGTGCTGGTGAATGCGGGGAACCTGTGGATCAAGCGGCGGGTGG
GGTCGCCAGGCACGGAGGTGTCGAACTCGTATCTGGAGACGCTGCACTTC
GGGCTGGGGTCGCGCACGGAGGTGACTGCGATCTACGTCAAGTATGCCAA
CGGGTACGTGGTGATGAGACGGAACGTGGAGCACGGGCAGACGGTTGTGC
TCGGGCTGCTGTGA