Gvermi3783.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3783.t1
Unique NameGvermi3783.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4269963..4270376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T012390
Max annot lvl121069|Pythiales
Evalue0.000332
EggNOG OGs2BKX4@1|root,2S1JI@2759|Eukaryota,1ME71@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3783Gvermi3783Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4269963..4270376 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3783.t1.stop1Gvermi3783.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4269963..4269965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3783.t1.CDS1Gvermi3783.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4269963..4270376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3783.t1.exon1Gvermi3783.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4269963..4270376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3783.t1.start1Gvermi3783.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4270374..4270376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3783.t1Gvermi3783.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4269963..4270376 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3783.t1 ID=Gvermi3783.t1|Name=Gvermi3783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=138bp
MALRSRAKPLLDAANKADAAAGAQGGGLRGFMQRMQDRLRTGKLLRPDVE
DDVLRKPVSESKFRFPSPGSQQPPVVPQGPYQNVFNIEYHSRDVRRRHSS
QQIDPADAAATAGLPPTAGTPVRSAFLGMAGDFDRNQ*
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spliced messenger RNA

>Gvermi3783.t1 ID=Gvermi3783.t1|Name=Gvermi3783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_41:4269963..4270376- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCCGATCGCGTGCAAAGCCGCTGCTCGATGCCGCCAACAAGGC
GGACGCCGCCGCGGGCGCGCAGGGCGGCGGTCTTCGCGGCTTCATGCAGC
GCATGCAGGACCGCCTGCGCACCGGCAAACTCTTGCGACCCGACGTGGAG
GATGACGTCCTGCGCAAGCCCGTTTCCGAGTCCAAGTTCCGCTTCCCGTC
CCCCGGGTCGCAGCAGCCGCCTGTTGTCCCACAGGGTCCGTATCAAAACG
TCTTCAACATTGAGTACCACAGCCGTGACGTCCGTCGACGCCACTCCTCC
CAGCAGATCGATCCGGCTGACGCCGCCGCAACCGCCGGCCTGCCGCCCAC
CGCCGGAACCCCCGTCCGAAGCGCCTTTCTCGGCATGGCCGGCGATTTTG
ATAGGAACCAATAA
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protein sequence of Gvermi3783.t1

>Gvermi3783.t1 ID=Gvermi3783.t1|Name=Gvermi3783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=138bp
MALRSRAKPLLDAANKADAAAGAQGGGLRGFMQRMQDRLRTGKLLRPDVE
DDVLRKPVSESKFRFPSPGSQQPPVVPQGPYQNVFNIEYHSRDVRRRHSS
QQIDPADAAATAGLPPTAGTPVRSAFLGMAGDFDRNQ*
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mRNA from alignment at ScGOVlb_41:4269963..4270376-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3783.t1 ID=Gvermi3783.t1|Name=Gvermi3783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_41:4269963..4270376- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCCGATCGCGTGCAAAGCCGCTGCTCGATGCCGCCAACAAGGC
GGACGCCGCCGCGGGCGCGCAGGGCGGCGGTCTTCGCGGCTTCATGCAGC
GCATGCAGGACCGCCTGCGCACCGGCAAACTCTTGCGACCCGACGTGGAG
GATGACGTCCTGCGCAAGCCCGTTTCCGAGTCCAAGTTCCGCTTCCCGTC
CCCCGGGTCGCAGCAGCCGCCTGTTGTCCCACAGGGTCCGTATCAAAACG
TCTTCAACATTGAGTACCACAGCCGTGACGTCCGTCGACGCCACTCCTCC
CAGCAGATCGATCCGGCTGACGCCGCCGCAACCGCCGGCCTGCCGCCCAC
CGCCGGAACCCCCGTCCGAAGCGCCTTTCTCGGCATGGCCGGCGATTTTG
ATAGGAACCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4269963..4270376-

>Gvermi3783.t1 ID=Gvermi3783.t1|Name=Gvermi3783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=414bp|location=Sequence derived from alignment at ScGOVlb_41:4269963..4270376- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCCGATCGCGTGCAAAGCCGCTGCTCGATGCCGCCAACAAGGC
GGACGCCGCCGCGGGCGCGCAGGGCGGCGGTCTTCGCGGCTTCATGCAGC
GCATGCAGGACCGCCTGCGCACCGGCAAACTCTTGCGACCCGACGTGGAG
GATGACGTCCTGCGCAAGCCCGTTTCCGAGTCCAAGTTCCGCTTCCCGTC
CCCCGGGTCGCAGCAGCCGCCTGTTGTCCCACAGGGTCCGTATCAAAACG
TCTTCAACATTGAGTACCACAGCCGTGACGTCCGTCGACGCCACTCCTCC
CAGCAGATCGATCCGGCTGACGCCGCCGCAACCGCCGGCCTGCCGCCCAC
CGCCGGAACCCCCGTCCGAAGCGCCTTTCTCGGCATGGCCGGCGATTTTG
ATAGGAACCAATAA
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