Gvermi3778.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3778.t1
Unique NameGvermi3778.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4255702..4257213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708025.1
PFAMsERO1
Max annot lvl2759|Eukaryota
KEGG koko:K10950
KEGG Pathwayko04141,ko05110,map04141,map05110
Evalue7.48e-105
EggNOG OGsCOG5061@1|root,KOG2608@2759|Eukaryota
DescriptionEndoplasmic Reticulum
COG categoryOU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3778Gvermi3778Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4255702..4257213 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3778.t1.stop1Gvermi3778.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4255702..4255704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3778.t1.CDS1Gvermi3778.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4255702..4257213 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3778.t1.exon1Gvermi3778.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4255702..4257213 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3778.t1.start1Gvermi3778.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4257211..4257213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3778.t1Gvermi3778.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4255702..4257213 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3778.t1 ID=Gvermi3778.t1|Name=Gvermi3778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MVLKPTKVFFTVLALIAISFALASSPFPYKHPETCVDARQIDRQSTKRVN
TLLRQLVSNSTYFSVFRVALDNACPFWGDEDAKCMIRECSVENCSDDEVP
EAWRASTHACATDDDKDNDLNNVDRSLTGLAAFIKQPMWYTADDDSWVKR
DDESKSVYVDLRRNPEQYTGYAGPASQRVWQAIYDENCFIFSDKCRSGIC
DPDTCKEERLFYRLISGLHASISMHIARRYLNGNTWGPNILIYKQRLRPY
KERISNLNVAYAVAMRALAKASTSLSPQSFEYLTGNEENDNFTKLQLNQL
FQLHLLQPHCQHKVFDESDMFLEKNKYMLPHFRCAFRNISMIMDCVGCEK
CRVWGKLQFLGLGTALRILFEEETPELERNEVIALFNLLYKLSTSVLTVD
EMEAQIQRNTKFNKIFGTMIGLCAVGLFSLISHRVSKQEASQRSSHHSPN
NVERSTISPSESSMSSAQSKLLQSENGGTDGASLKPSEETRTRRRTKAGL
NKT*
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spliced messenger RNA

>Gvermi3778.t1 ID=Gvermi3778.t1|Name=Gvermi3778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:4255702..4257213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGAAGCCCACAAAGGTGTTTTTCACTGTTCTCGCACTTATTGC
GATATCTTTTGCTCTTGCGTCATCACCGTTCCCGTATAAACACCCAGAAA
CCTGCGTCGACGCCCGCCAAATTGACCGCCAATCTACGAAGCGTGTAAAC
ACACTTCTCCGCCAGCTCGTTTCCAATTCTACGTACTTTTCTGTGTTCCG
AGTCGCACTAGACAATGCATGCCCTTTCTGGGGTGACGAAGACGCAAAGT
GCATGATTCGGGAATGCTCGGTTGAGAACTGTTCAGATGATGAAGTCCCA
GAAGCTTGGCGCGCCAGCACACATGCGTGTGCAACTGATGACGACAAAGA
TAACGACCTCAACAATGTCGACCGCAGCTTGACGGGCCTCGCTGCCTTCA
TTAAACAACCCATGTGGTATACGGCCGACGATGATTCGTGGGTTAAGAGA
GACGACGAAAGTAAAAGCGTTTACGTTGATTTAAGGCGCAACCCGGAGCA
ATACACTGGATATGCAGGTCCTGCGTCTCAGCGAGTGTGGCAGGCAATAT
ACGATGAGAACTGCTTCATCTTTTCTGACAAATGCCGTTCTGGAATTTGT
GATCCAGATACATGCAAAGAAGAACGGCTGTTTTATAGACTGATTTCCGG
ACTTCATGCGTCCATAAGTATGCACATTGCAAGGCGGTACCTGAATGGTA
ATACATGGGGTCCAAACATATTGATATACAAGCAGAGATTGCGACCCTAT
AAGGAACGCATCAGCAACTTAAATGTTGCATACGCCGTTGCCATGCGCGC
CCTTGCTAAGGCCTCCACATCTCTCTCACCTCAGTCCTTTGAATACCTGA
CTGGAAACGAAGAAAACGATAACTTTACCAAGTTGCAATTGAATCAGTTG
TTCCAGCTCCATCTGCTACAACCCCACTGCCAGCACAAAGTATTTGATGA
ATCAGACATGTTTCTTGAGAAAAACAAGTACATGCTACCGCACTTCCGCT
GTGCTTTCCGCAACATCAGTATGATAATGGATTGTGTTGGCTGTGAAAAA
TGTCGTGTTTGGGGCAAACTTCAGTTCTTAGGGCTAGGGACCGCGCTTCG
AATTCTTTTCGAAGAAGAGACACCCGAACTCGAGAGAAACGAAGTAATTG
CATTATTCAATCTCCTCTACAAGCTGTCCACGAGCGTATTAACTGTGGAT
GAAATGGAAGCACAGATACAGCGCAACACAAAATTCAATAAGATATTCGG
TACGATGATTGGTTTATGCGCCGTAGGGCTGTTCAGCCTTATTTCTCACA
GAGTATCTAAACAGGAAGCATCCCAAAGGTCATCTCATCACAGTCCAAAC
AACGTCGAGAGATCGACGATAAGTCCAAGTGAAAGTTCAATGTCATCCGC
TCAGTCGAAGCTCCTTCAGTCTGAGAACGGCGGAACAGATGGGGCATCCC
TGAAGCCATCTGAGGAAACACGGACCAGACGGAGAACCAAAGCTGGCCTG
AACAAAACATGA
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protein sequence of Gvermi3778.t1

>Gvermi3778.t1 ID=Gvermi3778.t1|Name=Gvermi3778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MVLKPTKVFFTVLALIAISFALASSPFPYKHPETCVDARQIDRQSTKRVN
TLLRQLVSNSTYFSVFRVALDNACPFWGDEDAKCMIRECSVENCSDDEVP
EAWRASTHACATDDDKDNDLNNVDRSLTGLAAFIKQPMWYTADDDSWVKR
DDESKSVYVDLRRNPEQYTGYAGPASQRVWQAIYDENCFIFSDKCRSGIC
DPDTCKEERLFYRLISGLHASISMHIARRYLNGNTWGPNILIYKQRLRPY
KERISNLNVAYAVAMRALAKASTSLSPQSFEYLTGNEENDNFTKLQLNQL
FQLHLLQPHCQHKVFDESDMFLEKNKYMLPHFRCAFRNISMIMDCVGCEK
CRVWGKLQFLGLGTALRILFEEETPELERNEVIALFNLLYKLSTSVLTVD
EMEAQIQRNTKFNKIFGTMIGLCAVGLFSLISHRVSKQEASQRSSHHSPN
NVERSTISPSESSMSSAQSKLLQSENGGTDGASLKPSEETRTRRRTKAGL
NKT*
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mRNA from alignment at ScGOVlb_41:4255702..4257213-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3778.t1 ID=Gvermi3778.t1|Name=Gvermi3778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:4255702..4257213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTGAAGCCCACAAAGGTGTTTTTCACTGTTCTCGCACTTATTGC
GATATCTTTTGCTCTTGCGTCATCACCGTTCCCGTATAAACACCCAGAAA
CCTGCGTCGACGCCCGCCAAATTGACCGCCAATCTACGAAGCGTGTAAAC
ACACTTCTCCGCCAGCTCGTTTCCAATTCTACGTACTTTTCTGTGTTCCG
AGTCGCACTAGACAATGCATGCCCTTTCTGGGGTGACGAAGACGCAAAGT
GCATGATTCGGGAATGCTCGGTTGAGAACTGTTCAGATGATGAAGTCCCA
GAAGCTTGGCGCGCCAGCACACATGCGTGTGCAACTGATGACGACAAAGA
TAACGACCTCAACAATGTCGACCGCAGCTTGACGGGCCTCGCTGCCTTCA
TTAAACAACCCATGTGGTATACGGCCGACGATGATTCGTGGGTTAAGAGA
GACGACGAAAGTAAAAGCGTTTACGTTGATTTAAGGCGCAACCCGGAGCA
ATACACTGGATATGCAGGTCCTGCGTCTCAGCGAGTGTGGCAGGCAATAT
ACGATGAGAACTGCTTCATCTTTTCTGACAAATGCCGTTCTGGAATTTGT
GATCCAGATACATGCAAAGAAGAACGGCTGTTTTATAGACTGATTTCCGG
ACTTCATGCGTCCATAAGTATGCACATTGCAAGGCGGTACCTGAATGGTA
ATACATGGGGTCCAAACATATTGATATACAAGCAGAGATTGCGACCCTAT
AAGGAACGCATCAGCAACTTAAATGTTGCATACGCCGTTGCCATGCGCGC
CCTTGCTAAGGCCTCCACATCTCTCTCACCTCAGTCCTTTGAATACCTGA
CTGGAAACGAAGAAAACGATAACTTTACCAAGTTGCAATTGAATCAGTTG
TTCCAGCTCCATCTGCTACAACCCCACTGCCAGCACAAAGTATTTGATGA
ATCAGACATGTTTCTTGAGAAAAACAAGTACATGCTACCGCACTTCCGCT
GTGCTTTCCGCAACATCAGTATGATAATGGATTGTGTTGGCTGTGAAAAA
TGTCGTGTTTGGGGCAAACTTCAGTTCTTAGGGCTAGGGACCGCGCTTCG
AATTCTTTTCGAAGAAGAGACACCCGAACTCGAGAGAAACGAAGTAATTG
CATTATTCAATCTCCTCTACAAGCTGTCCACGAGCGTATTAACTGTGGAT
GAAATGGAAGCACAGATACAGCGCAACACAAAATTCAATAAGATATTCGG
TACGATGATTGGTTTATGCGCCGTAGGGCTGTTCAGCCTTATTTCTCACA
GAGTATCTAAACAGGAAGCATCCCAAAGGTCATCTCATCACAGTCCAAAC
AACGTCGAGAGATCGACGATAAGTCCAAGTGAAAGTTCAATGTCATCCGC
TCAGTCGAAGCTCCTTCAGTCTGAGAACGGCGGAACAGATGGGGCATCCC
TGAAGCCATCTGAGGAAACACGGACCAGACGGAGAACCAAAGCTGGCCTG
AACAAAACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4255702..4257213-

>Gvermi3778.t1 ID=Gvermi3778.t1|Name=Gvermi3778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:4255702..4257213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTGAAGCCCACAAAGGTGTTTTTCACTGTTCTCGCACTTATTGC
GATATCTTTTGCTCTTGCGTCATCACCGTTCCCGTATAAACACCCAGAAA
CCTGCGTCGACGCCCGCCAAATTGACCGCCAATCTACGAAGCGTGTAAAC
ACACTTCTCCGCCAGCTCGTTTCCAATTCTACGTACTTTTCTGTGTTCCG
AGTCGCACTAGACAATGCATGCCCTTTCTGGGGTGACGAAGACGCAAAGT
GCATGATTCGGGAATGCTCGGTTGAGAACTGTTCAGATGATGAAGTCCCA
GAAGCTTGGCGCGCCAGCACACATGCGTGTGCAACTGATGACGACAAAGA
TAACGACCTCAACAATGTCGACCGCAGCTTGACGGGCCTCGCTGCCTTCA
TTAAACAACCCATGTGGTATACGGCCGACGATGATTCGTGGGTTAAGAGA
GACGACGAAAGTAAAAGCGTTTACGTTGATTTAAGGCGCAACCCGGAGCA
ATACACTGGATATGCAGGTCCTGCGTCTCAGCGAGTGTGGCAGGCAATAT
ACGATGAGAACTGCTTCATCTTTTCTGACAAATGCCGTTCTGGAATTTGT
GATCCAGATACATGCAAAGAAGAACGGCTGTTTTATAGACTGATTTCCGG
ACTTCATGCGTCCATAAGTATGCACATTGCAAGGCGGTACCTGAATGGTA
ATACATGGGGTCCAAACATATTGATATACAAGCAGAGATTGCGACCCTAT
AAGGAACGCATCAGCAACTTAAATGTTGCATACGCCGTTGCCATGCGCGC
CCTTGCTAAGGCCTCCACATCTCTCTCACCTCAGTCCTTTGAATACCTGA
CTGGAAACGAAGAAAACGATAACTTTACCAAGTTGCAATTGAATCAGTTG
TTCCAGCTCCATCTGCTACAACCCCACTGCCAGCACAAAGTATTTGATGA
ATCAGACATGTTTCTTGAGAAAAACAAGTACATGCTACCGCACTTCCGCT
GTGCTTTCCGCAACATCAGTATGATAATGGATTGTGTTGGCTGTGAAAAA
TGTCGTGTTTGGGGCAAACTTCAGTTCTTAGGGCTAGGGACCGCGCTTCG
AATTCTTTTCGAAGAAGAGACACCCGAACTCGAGAGAAACGAAGTAATTG
CATTATTCAATCTCCTCTACAAGCTGTCCACGAGCGTATTAACTGTGGAT
GAAATGGAAGCACAGATACAGCGCAACACAAAATTCAATAAGATATTCGG
TACGATGATTGGTTTATGCGCCGTAGGGCTGTTCAGCCTTATTTCTCACA
GAGTATCTAAACAGGAAGCATCCCAAAGGTCATCTCATCACAGTCCAAAC
AACGTCGAGAGATCGACGATAAGTCCAAGTGAAAGTTCAATGTCATCCGC
TCAGTCGAAGCTCCTTCAGTCTGAGAACGGCGGAACAGATGGGGCATCCC
TGAAGCCATCTGAGGAAACACGGACCAGACGGAGAACCAAAGCTGGCCTG
AACAAAACATGA
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