Gvermi3777.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3777.t1
Unique NameGvermi3777.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4254148..4255353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3777Gvermi3777Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4254148..4255353 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3777.t1.start1Gvermi3777.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4254148..4254150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3777.t1.CDS1Gvermi3777.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4254148..4255353 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3777.t1.exon1Gvermi3777.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4254148..4255353 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3777.t1.stop1Gvermi3777.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4255351..4255353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3777.t1Gvermi3777.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4254148..4255353 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3777.t1 ID=Gvermi3777.t1|Name=Gvermi3777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=402bp
MAEVGLKRLQNAELITQLLSDISPDQAIRWIMLHGIQKKQTSKRTIPHII
ARSLFSIVIRAPSVSEAQAARDSLSILFSAPEEHDAAALGFSGGETATFV
ANIIVDMLSAAAQDEPLQLTSPALSFYSEAGSGSGDTEEFHKATPEHRVG
HSYSHEALADVRQRNLAMAIDIYAEAFKQKGCRKRLLEVARSNMHRILAP
WLSILPSTISQLDSTMRNALFSFYNALATAFNEEERSDLVTRMVSSVMQT
IETSPEYLFHFVDGISSCPLKVSICRLCLIQRFRVADNDSSPLTARTIVN
NYLTLKPVKGRANQSVPVLLNILIKSWIETLPQKRITPEFLGRKDAIYPQ
KCVKKLSIAKRTFIERYKESLKDDLLAFSMATQILSYRIFTAEGTGNKTK
K*
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spliced messenger RNA

>Gvermi3777.t1 ID=Gvermi3777.t1|Name=Gvermi3777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at ScGOVlb_41:4254148..4255353+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAGTCGGTTTGAAACGCCTGCAGAATGCAGAGTTAATAACCCA
GCTTCTATCTGATATATCCCCAGACCAGGCAATTCGATGGATTATGCTTC
ATGGAATTCAAAAGAAGCAGACTTCGAAACGAACGATTCCACACATTATA
GCCAGGTCCCTTTTTTCAATCGTCATACGCGCTCCATCTGTGTCAGAGGC
ACAGGCCGCTCGAGATTCCCTGTCAATCTTGTTCTCTGCTCCTGAGGAGC
ATGATGCGGCGGCGCTTGGGTTTTCCGGAGGAGAGACTGCCACTTTTGTT
GCCAATATTATTGTGGATATGTTGTCAGCAGCCGCTCAGGATGAACCTCT
TCAACTTACATCCCCTGCTCTTTCCTTCTATTCAGAAGCAGGTTCCGGCT
CGGGCGATACGGAAGAGTTTCATAAAGCCACCCCTGAGCATCGAGTGGGG
CACTCTTACTCACATGAAGCATTGGCCGATGTCCGGCAACGAAATCTTGC
AATGGCCATTGATATATATGCGGAAGCTTTCAAACAAAAAGGATGTCGAA
AGAGACTGCTGGAAGTCGCGAGAAGCAATATGCATCGAATATTGGCACCT
TGGTTGTCTATATTGCCCTCTACGATTTCACAATTGGATTCAACAATGCG
GAATGCTCTATTTTCGTTCTACAATGCTCTGGCCACAGCTTTCAACGAAG
AAGAACGTTCAGATCTTGTGACTCGTATGGTGTCTTCTGTCATGCAAACT
ATTGAAACGAGCCCAGAATATCTGTTCCATTTCGTTGATGGAATTTCCAG
CTGTCCGCTGAAAGTCTCCATATGTCGATTGTGTTTGATTCAACGCTTTC
GAGTGGCAGATAATGATTCGAGTCCATTAACAGCGAGGACCATAGTTAAC
AATTATCTTACCTTGAAACCTGTGAAGGGCCGTGCTAATCAGTCCGTACC
CGTCTTGTTAAACATATTGATCAAGTCATGGATTGAAACTTTACCCCAGA
AGAGAATCACTCCAGAATTTCTCGGACGAAAGGATGCAATTTACCCTCAA
AAATGCGTGAAGAAGCTTAGTATTGCAAAGAGGACCTTTATCGAGAGATA
CAAAGAGAGTCTTAAGGATGACTTGTTGGCTTTCAGTATGGCAACCCAAA
TCCTTTCCTATCGCATTTTTACTGCGGAAGGTACAGGAAATAAAACCAAG
AAATAA
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protein sequence of Gvermi3777.t1

>Gvermi3777.t1 ID=Gvermi3777.t1|Name=Gvermi3777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=402bp
MAEVGLKRLQNAELITQLLSDISPDQAIRWIMLHGIQKKQTSKRTIPHII
ARSLFSIVIRAPSVSEAQAARDSLSILFSAPEEHDAAALGFSGGETATFV
ANIIVDMLSAAAQDEPLQLTSPALSFYSEAGSGSGDTEEFHKATPEHRVG
HSYSHEALADVRQRNLAMAIDIYAEAFKQKGCRKRLLEVARSNMHRILAP
WLSILPSTISQLDSTMRNALFSFYNALATAFNEEERSDLVTRMVSSVMQT
IETSPEYLFHFVDGISSCPLKVSICRLCLIQRFRVADNDSSPLTARTIVN
NYLTLKPVKGRANQSVPVLLNILIKSWIETLPQKRITPEFLGRKDAIYPQ
KCVKKLSIAKRTFIERYKESLKDDLLAFSMATQILSYRIFTAEGTGNKTK
K*
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mRNA from alignment at ScGOVlb_41:4254148..4255353+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3777.t1 ID=Gvermi3777.t1|Name=Gvermi3777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at ScGOVlb_41:4254148..4255353+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGAAGTCGGTTTGAAACGCCTGCAGAATGCAGAGTTAATAACCCA
GCTTCTATCTGATATATCCCCAGACCAGGCAATTCGATGGATTATGCTTC
ATGGAATTCAAAAGAAGCAGACTTCGAAACGAACGATTCCACACATTATA
GCCAGGTCCCTTTTTTCAATCGTCATACGCGCTCCATCTGTGTCAGAGGC
ACAGGCCGCTCGAGATTCCCTGTCAATCTTGTTCTCTGCTCCTGAGGAGC
ATGATGCGGCGGCGCTTGGGTTTTCCGGAGGAGAGACTGCCACTTTTGTT
GCCAATATTATTGTGGATATGTTGTCAGCAGCCGCTCAGGATGAACCTCT
TCAACTTACATCCCCTGCTCTTTCCTTCTATTCAGAAGCAGGTTCCGGCT
CGGGCGATACGGAAGAGTTTCATAAAGCCACCCCTGAGCATCGAGTGGGG
CACTCTTACTCACATGAAGCATTGGCCGATGTCCGGCAACGAAATCTTGC
AATGGCCATTGATATATATGCGGAAGCTTTCAAACAAAAAGGATGTCGAA
AGAGACTGCTGGAAGTCGCGAGAAGCAATATGCATCGAATATTGGCACCT
TGGTTGTCTATATTGCCCTCTACGATTTCACAATTGGATTCAACAATGCG
GAATGCTCTATTTTCGTTCTACAATGCTCTGGCCACAGCTTTCAACGAAG
AAGAACGTTCAGATCTTGTGACTCGTATGGTGTCTTCTGTCATGCAAACT
ATTGAAACGAGCCCAGAATATCTGTTCCATTTCGTTGATGGAATTTCCAG
CTGTCCGCTGAAAGTCTCCATATGTCGATTGTGTTTGATTCAACGCTTTC
GAGTGGCAGATAATGATTCGAGTCCATTAACAGCGAGGACCATAGTTAAC
AATTATCTTACCTTGAAACCTGTGAAGGGCCGTGCTAATCAGTCCGTACC
CGTCTTGTTAAACATATTGATCAAGTCATGGATTGAAACTTTACCCCAGA
AGAGAATCACTCCAGAATTTCTCGGACGAAAGGATGCAATTTACCCTCAA
AAATGCGTGAAGAAGCTTAGTATTGCAAAGAGGACCTTTATCGAGAGATA
CAAAGAGAGTCTTAAGGATGACTTGTTGGCTTTCAGTATGGCAACCCAAA
TCCTTTCCTATCGCATTTTTACTGCGGAAGGTACAGGAAATAAAACCAAG
AAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4254148..4255353+

>Gvermi3777.t1 ID=Gvermi3777.t1|Name=Gvermi3777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1206bp|location=Sequence derived from alignment at ScGOVlb_41:4254148..4255353+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGAAGTCGGTTTGAAACGCCTGCAGAATGCAGAGTTAATAACCCA
GCTTCTATCTGATATATCCCCAGACCAGGCAATTCGATGGATTATGCTTC
ATGGAATTCAAAAGAAGCAGACTTCGAAACGAACGATTCCACACATTATA
GCCAGGTCCCTTTTTTCAATCGTCATACGCGCTCCATCTGTGTCAGAGGC
ACAGGCCGCTCGAGATTCCCTGTCAATCTTGTTCTCTGCTCCTGAGGAGC
ATGATGCGGCGGCGCTTGGGTTTTCCGGAGGAGAGACTGCCACTTTTGTT
GCCAATATTATTGTGGATATGTTGTCAGCAGCCGCTCAGGATGAACCTCT
TCAACTTACATCCCCTGCTCTTTCCTTCTATTCAGAAGCAGGTTCCGGCT
CGGGCGATACGGAAGAGTTTCATAAAGCCACCCCTGAGCATCGAGTGGGG
CACTCTTACTCACATGAAGCATTGGCCGATGTCCGGCAACGAAATCTTGC
AATGGCCATTGATATATATGCGGAAGCTTTCAAACAAAAAGGATGTCGAA
AGAGACTGCTGGAAGTCGCGAGAAGCAATATGCATCGAATATTGGCACCT
TGGTTGTCTATATTGCCCTCTACGATTTCACAATTGGATTCAACAATGCG
GAATGCTCTATTTTCGTTCTACAATGCTCTGGCCACAGCTTTCAACGAAG
AAGAACGTTCAGATCTTGTGACTCGTATGGTGTCTTCTGTCATGCAAACT
ATTGAAACGAGCCCAGAATATCTGTTCCATTTCGTTGATGGAATTTCCAG
CTGTCCGCTGAAAGTCTCCATATGTCGATTGTGTTTGATTCAACGCTTTC
GAGTGGCAGATAATGATTCGAGTCCATTAACAGCGAGGACCATAGTTAAC
AATTATCTTACCTTGAAACCTGTGAAGGGCCGTGCTAATCAGTCCGTACC
CGTCTTGTTAAACATATTGATCAAGTCATGGATTGAAACTTTACCCCAGA
AGAGAATCACTCCAGAATTTCTCGGACGAAAGGATGCAATTTACCCTCAA
AAATGCGTGAAGAAGCTTAGTATTGCAAAGAGGACCTTTATCGAGAGATA
CAAAGAGAGTCTTAAGGATGACTTGTTGGCTTTCAGTATGGCAACCCAAA
TCCTTTCCTATCGCATTTTTACTGCGGAAGGTACAGGAAATAAAACCAAG
AAATAA
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