Gvermi3774.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3774.t1
Unique NameGvermi3774.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4244160..4245260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3774Gvermi3774Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4244160..4245260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3774.t1.stop1Gvermi3774.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4244160..4244162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3774.t1.CDS1Gvermi3774.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4244160..4245260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3774.t1.exon1Gvermi3774.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4244160..4245260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3774.t1.start1Gvermi3774.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4245258..4245260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3774.t1Gvermi3774.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4244160..4245260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3774.t1 ID=Gvermi3774.t1|Name=Gvermi3774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=367bp
MPRIPQQCSPQELEMFSNYLVWNFSSGKDLIELSFEETVELYCTVVSAPS
ETNLKSFLKHNRPRQAIDFFNKFGAQMGFKTLYGFAEAYYKAAIFQLPLS
RLMVIQARLRNIEDIDGTRPASLRLDAFWSRFVKDSKISAACGDIGKVAK
LEDRTLFRFMNRPVYEIAVVRKWVLDTNKKVSLPFKAFRMITFASHWFDT
RDEIIMHFDGMPELERSRQDCLNYLANCTSDCIDTEMLQEKVATVRFADA
FPEMLAHALIRSSSSLNGRQLASYVALWGLDFAGDAKRLNVEACRHFVLR
VKKRSPAWARIISLKVETMLHYSPGIRLLDQNGRAWKHSYTVSMLDEYIR
LLKLWYNPCNFSQAFC*
back to top

spliced messenger RNA

>Gvermi3774.t1 ID=Gvermi3774.t1|Name=Gvermi3774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at ScGOVlb_41:4244160..4245260- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGCATCCCCCAACAGTGCTCTCCTCAGGAGCTGGAAATGTTTTC
CAACTATCTTGTTTGGAATTTCTCATCTGGAAAAGACCTGATCGAACTTT
CTTTTGAAGAGACAGTTGAGTTGTATTGCACAGTAGTTTCCGCGCCATCT
GAAACCAACCTCAAAAGCTTCTTGAAGCACAACAGACCACGCCAGGCAAT
CGACTTTTTCAACAAATTTGGCGCTCAGATGGGGTTCAAAACACTATACG
GTTTTGCAGAAGCGTACTATAAAGCTGCTATTTTTCAACTGCCTCTCTCG
AGACTAATGGTAATCCAAGCAAGATTAAGAAACATTGAAGACATTGACGG
GACCAGACCCGCTTCCCTTCGCCTTGACGCTTTTTGGAGCCGTTTTGTCA
AGGATTCGAAAATCAGCGCAGCCTGTGGTGACATTGGCAAAGTGGCAAAG
CTAGAGGATCGTACATTATTTCGTTTCATGAACAGACCGGTTTATGAAAT
TGCTGTTGTGAGAAAATGGGTTCTGGACACAAACAAGAAAGTGAGTCTCC
CCTTCAAAGCTTTCCGAATGATAACTTTCGCCAGTCATTGGTTCGACACC
AGGGACGAGATCATTATGCATTTTGATGGAATGCCGGAGCTTGAACGCAG
TCGCCAAGATTGCTTGAACTATCTCGCGAACTGCACATCGGATTGTATCG
ATACGGAAATGCTGCAGGAGAAAGTTGCTACAGTCCGATTCGCTGACGCA
TTCCCCGAAATGCTTGCTCACGCTCTGATAAGGTCAAGCTCAAGCCTCAA
TGGACGACAGTTAGCATCCTATGTTGCTCTCTGGGGATTAGACTTTGCCG
GAGATGCAAAACGTTTGAATGTCGAGGCTTGTCGTCATTTCGTTTTGAGG
GTAAAGAAAAGATCGCCAGCTTGGGCCCGAATCATTAGTTTAAAAGTTGA
GACCATGCTTCACTATTCTCCTGGCATTCGTCTCTTGGATCAAAACGGCA
GAGCTTGGAAGCATTCTTACACAGTGAGCATGCTTGACGAGTACATTCGT
CTGCTGAAACTATGGTATAATCCTTGCAACTTTTCTCAAGCTTTTTGCTG
A
back to top

protein sequence of Gvermi3774.t1

>Gvermi3774.t1 ID=Gvermi3774.t1|Name=Gvermi3774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=367bp
MPRIPQQCSPQELEMFSNYLVWNFSSGKDLIELSFEETVELYCTVVSAPS
ETNLKSFLKHNRPRQAIDFFNKFGAQMGFKTLYGFAEAYYKAAIFQLPLS
RLMVIQARLRNIEDIDGTRPASLRLDAFWSRFVKDSKISAACGDIGKVAK
LEDRTLFRFMNRPVYEIAVVRKWVLDTNKKVSLPFKAFRMITFASHWFDT
RDEIIMHFDGMPELERSRQDCLNYLANCTSDCIDTEMLQEKVATVRFADA
FPEMLAHALIRSSSSLNGRQLASYVALWGLDFAGDAKRLNVEACRHFVLR
VKKRSPAWARIISLKVETMLHYSPGIRLLDQNGRAWKHSYTVSMLDEYIR
LLKLWYNPCNFSQAFC*
back to top

mRNA from alignment at ScGOVlb_41:4244160..4245260-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3774.t1 ID=Gvermi3774.t1|Name=Gvermi3774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at ScGOVlb_41:4244160..4245260- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCGCATCCCCCAACAGTGCTCTCCTCAGGAGCTGGAAATGTTTTC
CAACTATCTTGTTTGGAATTTCTCATCTGGAAAAGACCTGATCGAACTTT
CTTTTGAAGAGACAGTTGAGTTGTATTGCACAGTAGTTTCCGCGCCATCT
GAAACCAACCTCAAAAGCTTCTTGAAGCACAACAGACCACGCCAGGCAAT
CGACTTTTTCAACAAATTTGGCGCTCAGATGGGGTTCAAAACACTATACG
GTTTTGCAGAAGCGTACTATAAAGCTGCTATTTTTCAACTGCCTCTCTCG
AGACTAATGGTAATCCAAGCAAGATTAAGAAACATTGAAGACATTGACGG
GACCAGACCCGCTTCCCTTCGCCTTGACGCTTTTTGGAGCCGTTTTGTCA
AGGATTCGAAAATCAGCGCAGCCTGTGGTGACATTGGCAAAGTGGCAAAG
CTAGAGGATCGTACATTATTTCGTTTCATGAACAGACCGGTTTATGAAAT
TGCTGTTGTGAGAAAATGGGTTCTGGACACAAACAAGAAAGTGAGTCTCC
CCTTCAAAGCTTTCCGAATGATAACTTTCGCCAGTCATTGGTTCGACACC
AGGGACGAGATCATTATGCATTTTGATGGAATGCCGGAGCTTGAACGCAG
TCGCCAAGATTGCTTGAACTATCTCGCGAACTGCACATCGGATTGTATCG
ATACGGAAATGCTGCAGGAGAAAGTTGCTACAGTCCGATTCGCTGACGCA
TTCCCCGAAATGCTTGCTCACGCTCTGATAAGGTCAAGCTCAAGCCTCAA
TGGACGACAGTTAGCATCCTATGTTGCTCTCTGGGGATTAGACTTTGCCG
GAGATGCAAAACGTTTGAATGTCGAGGCTTGTCGTCATTTCGTTTTGAGG
GTAAAGAAAAGATCGCCAGCTTGGGCCCGAATCATTAGTTTAAAAGTTGA
GACCATGCTTCACTATTCTCCTGGCATTCGTCTCTTGGATCAAAACGGCA
GAGCTTGGAAGCATTCTTACACAGTGAGCATGCTTGACGAGTACATTCGT
CTGCTGAAACTATGGTATAATCCTTGCAACTTTTCTCAAGCTTTTTGCTG
A
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:4244160..4245260-

>Gvermi3774.t1 ID=Gvermi3774.t1|Name=Gvermi3774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1101bp|location=Sequence derived from alignment at ScGOVlb_41:4244160..4245260- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCGCATCCCCCAACAGTGCTCTCCTCAGGAGCTGGAAATGTTTTC
CAACTATCTTGTTTGGAATTTCTCATCTGGAAAAGACCTGATCGAACTTT
CTTTTGAAGAGACAGTTGAGTTGTATTGCACAGTAGTTTCCGCGCCATCT
GAAACCAACCTCAAAAGCTTCTTGAAGCACAACAGACCACGCCAGGCAAT
CGACTTTTTCAACAAATTTGGCGCTCAGATGGGGTTCAAAACACTATACG
GTTTTGCAGAAGCGTACTATAAAGCTGCTATTTTTCAACTGCCTCTCTCG
AGACTAATGGTAATCCAAGCAAGATTAAGAAACATTGAAGACATTGACGG
GACCAGACCCGCTTCCCTTCGCCTTGACGCTTTTTGGAGCCGTTTTGTCA
AGGATTCGAAAATCAGCGCAGCCTGTGGTGACATTGGCAAAGTGGCAAAG
CTAGAGGATCGTACATTATTTCGTTTCATGAACAGACCGGTTTATGAAAT
TGCTGTTGTGAGAAAATGGGTTCTGGACACAAACAAGAAAGTGAGTCTCC
CCTTCAAAGCTTTCCGAATGATAACTTTCGCCAGTCATTGGTTCGACACC
AGGGACGAGATCATTATGCATTTTGATGGAATGCCGGAGCTTGAACGCAG
TCGCCAAGATTGCTTGAACTATCTCGCGAACTGCACATCGGATTGTATCG
ATACGGAAATGCTGCAGGAGAAAGTTGCTACAGTCCGATTCGCTGACGCA
TTCCCCGAAATGCTTGCTCACGCTCTGATAAGGTCAAGCTCAAGCCTCAA
TGGACGACAGTTAGCATCCTATGTTGCTCTCTGGGGATTAGACTTTGCCG
GAGATGCAAAACGTTTGAATGTCGAGGCTTGTCGTCATTTCGTTTTGAGG
GTAAAGAAAAGATCGCCAGCTTGGGCCCGAATCATTAGTTTAAAAGTTGA
GACCATGCTTCACTATTCTCCTGGCATTCGTCTCTTGGATCAAAACGGCA
GAGCTTGGAAGCATTCTTACACAGTGAGCATGCTTGACGAGTACATTCGT
CTGCTGAAACTATGGTATAATCCTTGCAACTTTTCTCAAGCTTTTTGCTG
A
back to top