Gvermi3773.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3773.t1
Unique NameGvermi3773.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4241299..4241976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_3912
Preferred namendk
PFAMsNDK
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360
Evalue1.58e-71
EggNOG OGsCOG0105@1|root,COG0105@2|Bacteria,1G4ZN@1117|Cyanobacteria,3KHQN@43988|Cyanothece
EC2.7.4.6
DescriptionMajor role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3773Gvermi3773Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4241299..4241976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1Gvermi3773.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4241299..4241976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1.stop1Gvermi3773.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4241299..4241301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1.CDS1Gvermi3773.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4241299..4241404 -
Gvermi3773.t1.CDS2Gvermi3773.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4241513..4241521 -
Gvermi3773.t1.CDS3Gvermi3773.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4241633..4241976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1.exon1Gvermi3773.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4241299..4241404 -
Gvermi3773.t1.exon2Gvermi3773.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4241513..4241521 -
Gvermi3773.t1.exon3Gvermi3773.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4241633..4241976 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1.intron1Gvermi3773.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4241405..4241512 -
Gvermi3773.t1.intron2Gvermi3773.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4241522..4241632 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3773.t1.start1Gvermi3773.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4241974..4241976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3773.t1 ID=Gvermi3773.t1|Name=Gvermi3773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MARTERTFIAVKPDGINRGILGAIISRFENKGFKLVAIKTLVPTKQLAEE
HYESLKEKPFFNDLVHFITSGPVCAMVWEGEQVVVTARKMIGETNPLSSA
PGTIRGDYAVDVGRNVIHGSDAVETAQREIALWFEESELTTWQPTSSVWV
YE*
back to top

spliced messenger RNA

>Gvermi3773.t1 ID=Gvermi3773.t1|Name=Gvermi3773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_41:4241299..4241976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCACGGAAAGAACGTTTATCGCTGTGAAGCCCGATGGGATCAA
CCGCGGAATTCTCGGCGCTATTATCTCCCGTTTCGAAAATAAAGGCTTTA
AGCTCGTGGCCATCAAGACATTGGTTCCGACCAAACAGCTTGCCGAGGAG
CACTACGAGTCTCTCAAGGAAAAGCCCTTCTTCAACGACCTCGTGCACTT
TATCACCAGCGGACCCGTCTGCGCCATGGTTTGGGAAGGCGAACAGGTAG
TGGTCACCGCCCGTAAAATGATTGGGGAGACCAATCCGCTGAGTAGCGCC
CCAGGAACAATTCGCGGAGACTATGCTGTCGATGTCGGTCGCAATGTTAT
TCACGGTTCTGACGCTGTTGAGACTGCACAACGTGAAATTGCGCTCTGGT
TCGAAGAAAGCGAGCTGACGACCTGGCAACCCACGTCATCCGTGTGGGTA
TACGAATAA
back to top

protein sequence of Gvermi3773.t1

>Gvermi3773.t1 ID=Gvermi3773.t1|Name=Gvermi3773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MARTERTFIAVKPDGINRGILGAIISRFENKGFKLVAIKTLVPTKQLAEE
HYESLKEKPFFNDLVHFITSGPVCAMVWEGEQVVVTARKMIGETNPLSSA
PGTIRGDYAVDVGRNVIHGSDAVETAQREIALWFEESELTTWQPTSSVWV
YE*
back to top

mRNA from alignment at ScGOVlb_41:4241299..4241976-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3773.t1 ID=Gvermi3773.t1|Name=Gvermi3773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_41:4241299..4241976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGGAAAGAACGTTTATCGCTGTGAAGCCCGATGGGATCAA
CCGCGGAATTCTCGGCGCTATTATCTCCCGTTTCGAAAATAAAGGCTTTA
AGCTCGTGGCCATCAAGACATTGGTTCCGACCAAACAGCTTGCCGAGGAG
CACTACGAGTCTCTCAAGGAAAAGCCCTTCTTCAACGACCTCGTGCACTT
TATCACCAGCGGACCCGTCTGCGCCATGGTTTGGGAAGGCGAACAGGTAG
TGGTCACCGCCCGTAAAATGATTGGGGAGACCAATCCGCTGAGTAGCGCC
CCAGGAACAATTCGCGGAGACTATGCTGTCGATGTCGGTCGCAAGTACGT
TGCTACACAAATGCGTTTTCGTCCTGGGTTTCATTCGCTTTCTATGTAAT
CAAACTAACGAACGCGGACTTTCACACTCACTGCGCCGCTCCAAATCTTT
TCTAGTGTTATTCAGTAAGTTGACTCACCCATCTGCGCTTTTTCAAAATT
GCTCACAGGAGCGGTGCCCGCAGCCGTTGCAGATTTTTAACTCATGTACC
TCTCTGACGCTCTGCAATAAAGCGGTTCTGACGCTGTTGAGACTGCACAA
CGTGAAATTGCGCTCTGGTTCGAAGAAAGCGAGCTGACGACCTGGCAACC
CACGTCATCCGTGTGGGTATACGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:4241299..4241976-

>Gvermi3773.t1 ID=Gvermi3773.t1|Name=Gvermi3773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_41:4241299..4241976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGGAAAGAACGTTTATCGCTGTGAAGCCCGATGGGATCAA
CCGCGGAATTCTCGGCGCTATTATCTCCCGTTTCGAAAATAAAGGCTTTA
AGCTCGTGGCCATCAAGACATTGGTTCCGACCAAACAGCTTGCCGAGGAG
CACTACGAGTCTCTCAAGGAAAAGCCCTTCTTCAACGACCTCGTGCACTT
TATCACCAGCGGACCCGTCTGCGCCATGGTTTGGGAAGGCGAACAGGTAG
TGGTCACCGCCCGTAAAATGATTGGGGAGACCAATCCGCTGAGTAGCGCC
CCAGGAACAATTCGCGGAGACTATGCTGTCGATGTCGGTCGCAATGTTAT
TCACGGTTCTGACGCTGTTGAGACTGCACAACGTGAAATTGCGCTCTGGT
TCGAAGAAAGCGAGCTGACGACCTGGCAACCCACGTCATCCGTGTGGGTA
TACGAATAA
back to top