Gvermi3769.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3769.t1
Unique NameGvermi3769.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4230154..4230570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004504901.1
PFAMsDUF3128
Max annot lvl35493|Streptophyta
Evalue3.22e-11
EggNOG OGs2BT42@1|root,2S200@2759|Eukaryota,37VY8@33090|Viridiplantae,3GJEG@35493|Streptophyta,4JVXG@91835|fabids
DescriptionProtein of unknown function (DUF3128)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3769Gvermi3769Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4230154..4230570 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3769.t1.start1Gvermi3769.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4230154..4230156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3769.t1.CDS1Gvermi3769.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4230154..4230570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3769.t1.exon1Gvermi3769.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4230154..4230570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3769.t1.stop1Gvermi3769.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4230568..4230570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3769.t1Gvermi3769.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4230154..4230570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3769.t1 ID=Gvermi3769.t1|Name=Gvermi3769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=139bp
MDHSTQAVEETSPPQSMQAAETEKQRVPASCTKAFDSVYYCYSPFHQARH
FYILGELDDCRGRLKKFRMCVMSRFRAQSESEIIYEQDEKEEKKKKGLEN
VKPVWEFREEYLKNVAQADREEMEKQKGATEDQSAWWL*
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spliced messenger RNA

>Gvermi3769.t1 ID=Gvermi3769.t1|Name=Gvermi3769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=417bp|location=Sequence derived from alignment at ScGOVlb_41:4230154..4230570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCACAGCACCCAGGCAGTTGAAGAAACAAGTCCACCACAATCCAT
GCAAGCCGCCGAGACAGAAAAGCAAAGGGTACCCGCAAGCTGTACAAAAG
CTTTTGACAGTGTTTACTATTGCTACTCTCCGTTTCACCAAGCTCGTCAC
TTTTACATATTGGGCGAACTGGACGATTGCAGGGGTCGGCTCAAGAAATT
TCGCATGTGCGTCATGTCTCGCTTTAGAGCGCAGAGTGAGTCGGAAATCA
TATATGAACAAGACGAAAAAGAGGAAAAGAAGAAAAAAGGTTTGGAGAAC
GTGAAGCCTGTATGGGAGTTTCGAGAAGAATACCTTAAGAATGTAGCCCA
GGCGGATCGAGAAGAAATGGAAAAGCAGAAAGGGGCAACCGAGGATCAAT
CTGCGTGGTGGCTTTAA
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protein sequence of Gvermi3769.t1

>Gvermi3769.t1 ID=Gvermi3769.t1|Name=Gvermi3769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=139bp
MDHSTQAVEETSPPQSMQAAETEKQRVPASCTKAFDSVYYCYSPFHQARH
FYILGELDDCRGRLKKFRMCVMSRFRAQSESEIIYEQDEKEEKKKKGLEN
VKPVWEFREEYLKNVAQADREEMEKQKGATEDQSAWWL*
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mRNA from alignment at ScGOVlb_41:4230154..4230570+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3769.t1 ID=Gvermi3769.t1|Name=Gvermi3769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=417bp|location=Sequence derived from alignment at ScGOVlb_41:4230154..4230570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCACAGCACCCAGGCAGTTGAAGAAACAAGTCCACCACAATCCAT
GCAAGCCGCCGAGACAGAAAAGCAAAGGGTACCCGCAAGCTGTACAAAAG
CTTTTGACAGTGTTTACTATTGCTACTCTCCGTTTCACCAAGCTCGTCAC
TTTTACATATTGGGCGAACTGGACGATTGCAGGGGTCGGCTCAAGAAATT
TCGCATGTGCGTCATGTCTCGCTTTAGAGCGCAGAGTGAGTCGGAAATCA
TATATGAACAAGACGAAAAAGAGGAAAAGAAGAAAAAAGGTTTGGAGAAC
GTGAAGCCTGTATGGGAGTTTCGAGAAGAATACCTTAAGAATGTAGCCCA
GGCGGATCGAGAAGAAATGGAAAAGCAGAAAGGGGCAACCGAGGATCAAT
CTGCGTGGTGGCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4230154..4230570+

>Gvermi3769.t1 ID=Gvermi3769.t1|Name=Gvermi3769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=417bp|location=Sequence derived from alignment at ScGOVlb_41:4230154..4230570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCACAGCACCCAGGCAGTTGAAGAAACAAGTCCACCACAATCCAT
GCAAGCCGCCGAGACAGAAAAGCAAAGGGTACCCGCAAGCTGTACAAAAG
CTTTTGACAGTGTTTACTATTGCTACTCTCCGTTTCACCAAGCTCGTCAC
TTTTACATATTGGGCGAACTGGACGATTGCAGGGGTCGGCTCAAGAAATT
TCGCATGTGCGTCATGTCTCGCTTTAGAGCGCAGAGTGAGTCGGAAATCA
TATATGAACAAGACGAAAAAGAGGAAAAGAAGAAAAAAGGTTTGGAGAAC
GTGAAGCCTGTATGGGAGTTTCGAGAAGAATACCTTAAGAATGTAGCCCA
GGCGGATCGAGAAGAAATGGAAAAGCAGAAAGGGGCAACCGAGGATCAAT
CTGCGTGGTGGCTTTAA
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