Gvermi3768.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3768.t1
Unique NameGvermi3768.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4228998..4229555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_07441T0
PFAMsBRCT_2,PTCB-BRCT
Max annot lvl4751|Fungi
Evalue7.82e-11
EggNOG OGsCOG0389@1|root,KOG2093@2759|Eukaryota,3A7UN@33154|Opisthokonta,3P5TJ@4751|Fungi
Descriptionbreast cancer carboxy-terminal domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3768Gvermi3768Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4228998..4229555 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3768.t1.stop1Gvermi3768.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4228998..4229000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3768.t1.CDS1Gvermi3768.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4228998..4229555 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3768.t1.exon1Gvermi3768.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4228998..4229555 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3768.t1.start1Gvermi3768.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4229553..4229555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3768.t1Gvermi3768.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4228998..4229555 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3768.t1 ID=Gvermi3768.t1|Name=Gvermi3768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=186bp
MDSSGRRDKLSREAKTTSKDLEGEEGSPFHFSATEKSKKGTWDGMSSYFA
ERERKLSAQAPAAVTQILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKV
WYRKRVTHVIADCLAASKVEKELSLSVSQRGRAVVVKPKWLEDSLRERKK
MPTWEYQVVRRDDTRNVSDFFRKEKTIKKVRKKKG*
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spliced messenger RNA

>Gvermi3768.t1 ID=Gvermi3768.t1|Name=Gvermi3768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_41:4228998..4229555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCATCCGGACGCAGAGATAAGCTCAGCCGCGAGGCAAAAACAAC
CAGCAAGGATTTAGAGGGTGAAGAGGGAAGCCCGTTTCATTTCTCAGCTA
CCGAGAAATCAAAGAAAGGCACCTGGGATGGCATGTCTTCCTATTTTGCC
GAACGGGAACGAAAGCTTTCTGCGCAAGCGCCGGCGGCAGTGACACAAAT
TCTCAAGGGCGTCAAGGTCTATTTTACAGGGGTGAAATCAACTAGTCAAC
GTCGTCTCGAGCGCTTAGTGTGGGAAAACGGTGGCGAGGTATTGAAAGTA
TGGTATCGAAAAAGGGTGACACACGTTATCGCTGATTGCCTAGCAGCATC
AAAAGTGGAAAAAGAATTATCGCTAAGCGTGAGTCAACGAGGTCGAGCCG
TGGTTGTGAAACCGAAATGGTTAGAAGATTCGCTTCGAGAGCGTAAAAAA
ATGCCAACTTGGGAGTATCAGGTTGTCCGTCGTGACGACACACGTAATGT
AAGCGATTTCTTCCGAAAGGAAAAGACCATCAAGAAGGTGAGAAAAAAGA
AGGGATGA
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protein sequence of Gvermi3768.t1

>Gvermi3768.t1 ID=Gvermi3768.t1|Name=Gvermi3768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=186bp
MDSSGRRDKLSREAKTTSKDLEGEEGSPFHFSATEKSKKGTWDGMSSYFA
ERERKLSAQAPAAVTQILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKV
WYRKRVTHVIADCLAASKVEKELSLSVSQRGRAVVVKPKWLEDSLRERKK
MPTWEYQVVRRDDTRNVSDFFRKEKTIKKVRKKKG*
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mRNA from alignment at ScGOVlb_41:4228998..4229555-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3768.t1 ID=Gvermi3768.t1|Name=Gvermi3768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_41:4228998..4229555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCATCCGGACGCAGAGATAAGCTCAGCCGCGAGGCAAAAACAAC
CAGCAAGGATTTAGAGGGTGAAGAGGGAAGCCCGTTTCATTTCTCAGCTA
CCGAGAAATCAAAGAAAGGCACCTGGGATGGCATGTCTTCCTATTTTGCC
GAACGGGAACGAAAGCTTTCTGCGCAAGCGCCGGCGGCAGTGACACAAAT
TCTCAAGGGCGTCAAGGTCTATTTTACAGGGGTGAAATCAACTAGTCAAC
GTCGTCTCGAGCGCTTAGTGTGGGAAAACGGTGGCGAGGTATTGAAAGTA
TGGTATCGAAAAAGGGTGACACACGTTATCGCTGATTGCCTAGCAGCATC
AAAAGTGGAAAAAGAATTATCGCTAAGCGTGAGTCAACGAGGTCGAGCCG
TGGTTGTGAAACCGAAATGGTTAGAAGATTCGCTTCGAGAGCGTAAAAAA
ATGCCAACTTGGGAGTATCAGGTTGTCCGTCGTGACGACACACGTAATGT
AAGCGATTTCTTCCGAAAGGAAAAGACCATCAAGAAGGTGAGAAAAAAGA
AGGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4228998..4229555-

>Gvermi3768.t1 ID=Gvermi3768.t1|Name=Gvermi3768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=558bp|location=Sequence derived from alignment at ScGOVlb_41:4228998..4229555- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCATCCGGACGCAGAGATAAGCTCAGCCGCGAGGCAAAAACAAC
CAGCAAGGATTTAGAGGGTGAAGAGGGAAGCCCGTTTCATTTCTCAGCTA
CCGAGAAATCAAAGAAAGGCACCTGGGATGGCATGTCTTCCTATTTTGCC
GAACGGGAACGAAAGCTTTCTGCGCAAGCGCCGGCGGCAGTGACACAAAT
TCTCAAGGGCGTCAAGGTCTATTTTACAGGGGTGAAATCAACTAGTCAAC
GTCGTCTCGAGCGCTTAGTGTGGGAAAACGGTGGCGAGGTATTGAAAGTA
TGGTATCGAAAAAGGGTGACACACGTTATCGCTGATTGCCTAGCAGCATC
AAAAGTGGAAAAAGAATTATCGCTAAGCGTGAGTCAACGAGGTCGAGCCG
TGGTTGTGAAACCGAAATGGTTAGAAGATTCGCTTCGAGAGCGTAAAAAA
ATGCCAACTTGGGAGTATCAGGTTGTCCGTCGTGACGACACACGTAATGT
AAGCGATTTCTTCCGAAAGGAAAAGACCATCAAGAAGGTGAGAAAAAAGA
AGGGATGA
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