Gvermi3745.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3745.t1
Unique NameGvermi3745.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4171923..4172774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_010098m
PFAMsTPR_16,TPR_19
Max annot lvl35493|Streptophyta
Evalue1.73e-33
EggNOG OGsKOG3060@1|root,KOG3060@2759|Eukaryota,37JEA@33090|Viridiplantae,3G7T1@35493|Streptophyta,4JNGW@91835|fabids
DescriptionER membrane protein complex subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3745Gvermi3745Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4171923..4172774 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3745.t1.stop1Gvermi3745.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4171923..4171925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3745.t1.CDS1Gvermi3745.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4171923..4172774 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3745.t1.exon1Gvermi3745.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4171923..4172774 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3745.t1.start1Gvermi3745.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4172772..4172774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3745.t1Gvermi3745.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4171923..4172774 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3745.t1 ID=Gvermi3745.t1|Name=Gvermi3745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=284bp
LSAIADASLYLPQLVVQHAALALNAHRCSSRPYWDILEQLFIAACQIRDN
ATASSTLARIMERFPNSPRSRLLRALSLEAKCDWVAAANEYIHIIAEYPL
SQNAYKRQIALLKSQQKLPEAAALLHHYLDLFTTDFDAWAESCSIALQLH
RYAHAIFAANELLVIDPENHAAHVLVADVYVTLGGVDHLCLARKHYATSL
ALRPAPNLRALYGLWLVCASLLDGELLDDSPETERNTTMRLLNVAKKGIT
AVYANPSALSGGVFVATTLGSNVHTGKRRMIKC*
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spliced messenger RNA

>Gvermi3745.t1 ID=Gvermi3745.t1|Name=Gvermi3745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=852bp|location=Sequence derived from alignment at ScGOVlb_41:4171923..4172774- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCCGCAATAGCCGACGCCTCCCTGTATCTACCGCAGCTGGTAGTGCA
GCACGCCGCCTTGGCGCTCAACGCCCATCGCTGCTCCTCGCGCCCGTACT
GGGATATCCTCGAGCAATTGTTCATCGCCGCCTGCCAGATTCGAGACAAT
GCCACCGCCTCCTCCACCTTGGCCCGCATCATGGAAAGATTCCCCAACAG
CCCGCGATCCCGCCTTCTGCGCGCACTCAGTCTTGAGGCAAAGTGCGACT
GGGTCGCTGCCGCAAACGAGTATATCCACATCATCGCAGAATATCCACTT
TCGCAGAATGCGTACAAAAGGCAGATTGCTTTGCTCAAGTCGCAGCAAAA
GCTTCCGGAGGCGGCCGCCCTGCTGCACCACTACCTCGATTTGTTCACCA
CTGATTTCGATGCGTGGGCCGAGTCATGCTCCATTGCCCTGCAGCTTCAT
CGATACGCCCACGCAATATTCGCTGCCAATGAGCTACTCGTCATCGACCC
TGAAAACCATGCCGCACACGTGCTTGTGGCAGACGTGTATGTCACCTTGG
GCGGCGTTGACCACCTTTGTCTGGCACGCAAGCACTATGCTACTAGTCTG
GCGCTGCGTCCTGCCCCCAATCTGCGTGCCCTATATGGCTTATGGCTTGT
CTGCGCTTCGCTTTTGGATGGCGAGCTTCTTGACGACTCACCTGAAACGG
AAAGGAACACAACCATGAGGTTGCTCAACGTTGCTAAAAAGGGAATAACT
GCTGTGTACGCGAATCCTTCTGCTCTTTCTGGTGGTGTATTCGTCGCAAC
TACTCTTGGATCAAACGTTCACACAGGCAAGAGGCGCATGATTAAGTGTT
AG
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protein sequence of Gvermi3745.t1

>Gvermi3745.t1 ID=Gvermi3745.t1|Name=Gvermi3745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=284bp
LSAIADASLYLPQLVVQHAALALNAHRCSSRPYWDILEQLFIAACQIRDN
ATASSTLARIMERFPNSPRSRLLRALSLEAKCDWVAAANEYIHIIAEYPL
SQNAYKRQIALLKSQQKLPEAAALLHHYLDLFTTDFDAWAESCSIALQLH
RYAHAIFAANELLVIDPENHAAHVLVADVYVTLGGVDHLCLARKHYATSL
ALRPAPNLRALYGLWLVCASLLDGELLDDSPETERNTTMRLLNVAKKGIT
AVYANPSALSGGVFVATTLGSNVHTGKRRMIKC*
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mRNA from alignment at ScGOVlb_41:4171923..4172774-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3745.t1 ID=Gvermi3745.t1|Name=Gvermi3745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=852bp|location=Sequence derived from alignment at ScGOVlb_41:4171923..4172774- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGCAATAGCCGACGCCTCCCTGTATCTACCGCAGCTGGTAGTGCA
GCACGCCGCCTTGGCGCTCAACGCCCATCGCTGCTCCTCGCGCCCGTACT
GGGATATCCTCGAGCAATTGTTCATCGCCGCCTGCCAGATTCGAGACAAT
GCCACCGCCTCCTCCACCTTGGCCCGCATCATGGAAAGATTCCCCAACAG
CCCGCGATCCCGCCTTCTGCGCGCACTCAGTCTTGAGGCAAAGTGCGACT
GGGTCGCTGCCGCAAACGAGTATATCCACATCATCGCAGAATATCCACTT
TCGCAGAATGCGTACAAAAGGCAGATTGCTTTGCTCAAGTCGCAGCAAAA
GCTTCCGGAGGCGGCCGCCCTGCTGCACCACTACCTCGATTTGTTCACCA
CTGATTTCGATGCGTGGGCCGAGTCATGCTCCATTGCCCTGCAGCTTCAT
CGATACGCCCACGCAATATTCGCTGCCAATGAGCTACTCGTCATCGACCC
TGAAAACCATGCCGCACACGTGCTTGTGGCAGACGTGTATGTCACCTTGG
GCGGCGTTGACCACCTTTGTCTGGCACGCAAGCACTATGCTACTAGTCTG
GCGCTGCGTCCTGCCCCCAATCTGCGTGCCCTATATGGCTTATGGCTTGT
CTGCGCTTCGCTTTTGGATGGCGAGCTTCTTGACGACTCACCTGAAACGG
AAAGGAACACAACCATGAGGTTGCTCAACGTTGCTAAAAAGGGAATAACT
GCTGTGTACGCGAATCCTTCTGCTCTTTCTGGTGGTGTATTCGTCGCAAC
TACTCTTGGATCAAACGTTCACACAGGCAAGAGGCGCATGATTAAGTGTT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_41:4171923..4172774-

>Gvermi3745.t1 ID=Gvermi3745.t1|Name=Gvermi3745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=852bp|location=Sequence derived from alignment at ScGOVlb_41:4171923..4172774- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGCAATAGCCGACGCCTCCCTGTATCTACCGCAGCTGGTAGTGCA
GCACGCCGCCTTGGCGCTCAACGCCCATCGCTGCTCCTCGCGCCCGTACT
GGGATATCCTCGAGCAATTGTTCATCGCCGCCTGCCAGATTCGAGACAAT
GCCACCGCCTCCTCCACCTTGGCCCGCATCATGGAAAGATTCCCCAACAG
CCCGCGATCCCGCCTTCTGCGCGCACTCAGTCTTGAGGCAAAGTGCGACT
GGGTCGCTGCCGCAAACGAGTATATCCACATCATCGCAGAATATCCACTT
TCGCAGAATGCGTACAAAAGGCAGATTGCTTTGCTCAAGTCGCAGCAAAA
GCTTCCGGAGGCGGCCGCCCTGCTGCACCACTACCTCGATTTGTTCACCA
CTGATTTCGATGCGTGGGCCGAGTCATGCTCCATTGCCCTGCAGCTTCAT
CGATACGCCCACGCAATATTCGCTGCCAATGAGCTACTCGTCATCGACCC
TGAAAACCATGCCGCACACGTGCTTGTGGCAGACGTGTATGTCACCTTGG
GCGGCGTTGACCACCTTTGTCTGGCACGCAAGCACTATGCTACTAGTCTG
GCGCTGCGTCCTGCCCCCAATCTGCGTGCCCTATATGGCTTATGGCTTGT
CTGCGCTTCGCTTTTGGATGGCGAGCTTCTTGACGACTCACCTGAAACGG
AAAGGAACACAACCATGAGGTTGCTCAACGTTGCTAAAAAGGGAATAACT
GCTGTGTACGCGAATCCTTCTGCTCTTTCTGGTGGTGTATTCGTCGCAAC
TACTCTTGGATCAAACGTTCACACAGGCAAGAGGCGCATGATTAAGTGTT
AG
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