Gvermi3743.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3743.t1
Unique Name	Gvermi3743.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	301

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4136926..4137828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704184.1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17306
Evalue	9.8e-39
EggNOG OGs	2E9QI@1\|root,2SG1G@2759\|Eukaryota
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3743	Gvermi3743	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4136926..4137828 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3743.t1.start1	Gvermi3743.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4136926..4136928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3743.t1.CDS1	Gvermi3743.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4136926..4137828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3743.t1.exon1	Gvermi3743.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4136926..4137828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3743.t1.stop1	Gvermi3743.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4137826..4137828 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3743.t1	Gvermi3743.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4136926..4137828 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4136926..4137828+
coding sequence from alignment at ScGOVlb_41:4136926..4137828+

mRNA sequence

>Gvermi3743.t1 ID=Gvermi3743.t1|Name=Gvermi3743.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=301bp
MSVADAASVRTVAVQLRALSADPDNQPIIAREDGCLRALISFVEAQHLPV
AAIAVAAIANLASHPDNFDLLRSEHDLMHALRELLLADAADRDLRQSIFD
VLEQLVDEADDHEMDELDQLEQSAGLRDKPPPEPGLMPHPTTVRLHVPGI
SDDVFCVRVEQLVIRKRGVISIAFELGAEVAVIYTRTPPEELVSYVATMT
GVDAQQVPDPPDDDEQLEDDDTASEMDNPTSTPAYLDESGQRLRDVAKKN
AKKKHTISQGASSLHERLRAQREEENRKKARANRLLDSIGRGMTSGWGLW
*

spliced messenger RNA

>Gvermi3743.t1 ID=Gvermi3743.t1|Name=Gvermi3743.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=903bp|location=Sequence derived from alignment at ScGOVlb_41:4136926..4137828+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTAGCCGACGCCGCCAGCGTGCGCACCGTCGCCGTGCAGCTGCG
CGCCCTGTCGGCCGACCCGGACAACCAGCCCATCATCGCGCGCGAGGACG
GCTGCCTGCGCGCCCTCATCTCCTTCGTCGAGGCGCAGCACCTGCCCGTC
GCCGCTATCGCCGTCGCCGCCATCGCCAACCTCGCCTCTCACCCCGACAA
CTTTGATCTGCTGCGCTCCGAGCATGACCTCATGCACGCCCTGCGCGAGT
TGTTGCTTGCCGACGCCGCCGACCGCGACCTGCGCCAGTCCATCTTCGAC
GTGCTGGAGCAGCTCGTCGACGAGGCCGACGACCACGAGATGGACGAGCT
CGACCAGCTGGAGCAGAGCGCCGGCCTTCGCGATAAGCCGCCCCCCGAGC
CCGGCCTCATGCCGCACCCCACCACCGTCCGCCTGCACGTCCCCGGCATT
TCGGACGACGTCTTCTGCGTGCGCGTCGAGCAGCTCGTCATTCGCAAGCG
CGGCGTCATCTCCATTGCCTTCGAGCTGGGCGCCGAGGTCGCCGTCATCT
ACACCCGCACCCCGCCTGAGGAGCTGGTGTCCTATGTGGCAACCATGACT
GGCGTCGACGCCCAGCAGGTACCAGACCCGCCCGACGATGATGAACAACT
CGAAGACGACGACACCGCGTCCGAAATGGACAACCCAACCTCCACGCCGG
CCTATCTCGACGAATCGGGCCAGAGACTCCGCGATGTCGCCAAGAAAAAC
GCAAAGAAGAAGCACACCATTTCGCAGGGCGCTAGTTCTTTGCATGAGCG
GCTTCGCGCCCAGCGCGAGGAGGAGAACCGGAAAAAGGCTCGTGCCAACA
GATTATTAGATAGCATTGGTAGAGGCATGACTTCTGGTTGGGGGCTTTGG
TAA

protein sequence of Gvermi3743.t1

>Gvermi3743.t1 ID=Gvermi3743.t1|Name=Gvermi3743.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=301bp
MSVADAASVRTVAVQLRALSADPDNQPIIAREDGCLRALISFVEAQHLPV
AAIAVAAIANLASHPDNFDLLRSEHDLMHALRELLLADAADRDLRQSIFD
VLEQLVDEADDHEMDELDQLEQSAGLRDKPPPEPGLMPHPTTVRLHVPGI
SDDVFCVRVEQLVIRKRGVISIAFELGAEVAVIYTRTPPEELVSYVATMT
GVDAQQVPDPPDDDEQLEDDDTASEMDNPTSTPAYLDESGQRLRDVAKKN
AKKKHTISQGASSLHERLRAQREEENRKKARANRLLDSIGRGMTSGWGLW
*

mRNA from alignment at ScGOVlb_41:4136926..4137828+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3743.t1 ID=Gvermi3743.t1|Name=Gvermi3743.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=903bp|location=Sequence derived from alignment at ScGOVlb_41:4136926..4137828+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTAGCCGACGCCGCCAGCGTGCGCACCGTCGCCGTGCAGCTGCG
CGCCCTGTCGGCCGACCCGGACAACCAGCCCATCATCGCGCGCGAGGACG
GCTGCCTGCGCGCCCTCATCTCCTTCGTCGAGGCGCAGCACCTGCCCGTC
GCCGCTATCGCCGTCGCCGCCATCGCCAACCTCGCCTCTCACCCCGACAA
CTTTGATCTGCTGCGCTCCGAGCATGACCTCATGCACGCCCTGCGCGAGT
TGTTGCTTGCCGACGCCGCCGACCGCGACCTGCGCCAGTCCATCTTCGAC
GTGCTGGAGCAGCTCGTCGACGAGGCCGACGACCACGAGATGGACGAGCT
CGACCAGCTGGAGCAGAGCGCCGGCCTTCGCGATAAGCCGCCCCCCGAGC
CCGGCCTCATGCCGCACCCCACCACCGTCCGCCTGCACGTCCCCGGCATT
TCGGACGACGTCTTCTGCGTGCGCGTCGAGCAGCTCGTCATTCGCAAGCG
CGGCGTCATCTCCATTGCCTTCGAGCTGGGCGCCGAGGTCGCCGTCATCT
ACACCCGCACCCCGCCTGAGGAGCTGGTGTCCTATGTGGCAACCATGACT
GGCGTCGACGCCCAGCAGGTACCAGACCCGCCCGACGATGATGAACAACT
CGAAGACGACGACACCGCGTCCGAAATGGACAACCCAACCTCCACGCCGG
CCTATCTCGACGAATCGGGCCAGAGACTCCGCGATGTCGCCAAGAAAAAC
GCAAAGAAGAAGCACACCATTTCGCAGGGCGCTAGTTCTTTGCATGAGCG
GCTTCGCGCCCAGCGCGAGGAGGAGAACCGGAAAAAGGCTCGTGCCAACA
GATTATTAGATAGCATTGGTAGAGGCATGACTTCTGGTTGGGGGCTTTGG
TAA

Coding sequence (CDS) from alignment at ScGOVlb_41:4136926..4137828+

>Gvermi3743.t1 ID=Gvermi3743.t1|Name=Gvermi3743.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=903bp|location=Sequence derived from alignment at ScGOVlb_41:4136926..4137828+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTAGCCGACGCCGCCAGCGTGCGCACCGTCGCCGTGCAGCTGCG
CGCCCTGTCGGCCGACCCGGACAACCAGCCCATCATCGCGCGCGAGGACG
GCTGCCTGCGCGCCCTCATCTCCTTCGTCGAGGCGCAGCACCTGCCCGTC
GCCGCTATCGCCGTCGCCGCCATCGCCAACCTCGCCTCTCACCCCGACAA
CTTTGATCTGCTGCGCTCCGAGCATGACCTCATGCACGCCCTGCGCGAGT
TGTTGCTTGCCGACGCCGCCGACCGCGACCTGCGCCAGTCCATCTTCGAC
GTGCTGGAGCAGCTCGTCGACGAGGCCGACGACCACGAGATGGACGAGCT
CGACCAGCTGGAGCAGAGCGCCGGCCTTCGCGATAAGCCGCCCCCCGAGC
CCGGCCTCATGCCGCACCCCACCACCGTCCGCCTGCACGTCCCCGGCATT
TCGGACGACGTCTTCTGCGTGCGCGTCGAGCAGCTCGTCATTCGCAAGCG
CGGCGTCATCTCCATTGCCTTCGAGCTGGGCGCCGAGGTCGCCGTCATCT
ACACCCGCACCCCGCCTGAGGAGCTGGTGTCCTATGTGGCAACCATGACT
GGCGTCGACGCCCAGCAGGTACCAGACCCGCCCGACGATGATGAACAACT
CGAAGACGACGACACCGCGTCCGAAATGGACAACCCAACCTCCACGCCGG
CCTATCTCGACGAATCGGGCCAGAGACTCCGCGATGTCGCCAAGAAAAAC
GCAAAGAAGAAGCACACCATTTCGCAGGGCGCTAGTTCTTTGCATGAGCG
GCTTCGCGCCCAGCGCGAGGAGGAGAACCGGAAAAAGGCTCGTGCCAACA
GATTATTAGATAGCATTGGTAGAGGCATGACTTCTGGTTGGGGGCTTTGG
TAA